RNA–Protein interactions for RNA: ENST00000286835.11

SCAF4-201, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SCAF4, Length 4,193 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-201ENST00000286835 KIF27Q86VH2 1401 aa18.63■□□□□ 0.57
SCAF4-201ENST00000286835 FAM9BQ8IZU0 186 aa18.6■□□□□ 0.57
SCAF4-201ENST00000286835 BCL11AQ9H165 835 aa18.59■□□□□ 0.57
SCAF4-201ENST00000286835 CHIC2Q9UKJ5 165 aa18.59■□□□□ 0.57
SCAF4-201ENST00000286835 SENP3-EIF4A1A0A087X0R7 540 aa18.57■□□□□ 0.56
SCAF4-201ENST00000286835 CHMP7Q8WUX9 453 aaPredicted RBP18.56■□□□□ 0.56
SCAF4-201ENST00000286835 SETD5Q9C0A6 1442 aa18.55■□□□□ 0.56
SCAF4-201ENST00000286835 ARAP1Q96P48 1450 aa18.52■□□□□ 0.56
SCAF4-201ENST00000286835 ZNF326Q5BKZ1 582 aaKnown RBP18.52■□□□□ 0.55
SCAF4-201ENST00000286835 ZNF777Q9ULD5 760 aaPredicted RBP18.5■□□□□ 0.55
SCAF4-201ENST00000286835 RRP7BPQ9NSQ0 103 aa18.49■□□□□ 0.55
SCAF4-201ENST00000286835 CADPSQ9ULU8 1353 aa18.49■□□□□ 0.55
SCAF4-201ENST00000286835 CUX2O14529 1486 aa18.48■□□□□ 0.55
SCAF4-201ENST00000286835 ERCC6Q03468 1493 aa18.47■□□□□ 0.55
SCAF4-201ENST00000286835 PPP1R15AO75807 674 aaPredicted RBP18.47■□□□□ 0.55
SCAF4-201ENST00000286835 NBR1Q14596 966 aa18.44■□□□□ 0.54
SCAF4-201ENST00000286835 MRS2Q9HD23 443 aa18.43■□□□□ 0.54
SCAF4-201ENST00000286835 MTUS2Q5JR59 1369 aa18.43■□□□□ 0.54
SCAF4-201ENST00000286835 CCER2I3L3R5 266 aa18.43■□□□□ 0.54
SCAF4-201ENST00000286835 TDRD9Q8NDG6 1382 aaKnown RBP18.42■□□□□ 0.54
SCAF4-201ENST00000286835 CARMIL1Q5VZK9 1371 aa18.42■□□□□ 0.54
SCAF4-201ENST00000286835 B4GALNT3Q6L9W6 998 aa18.4■□□□□ 0.54
SCAF4-201ENST00000286835 RRBP1Q9P2E9 1410 aaKnown RBP18.4■□□□□ 0.54
SCAF4-201ENST00000286835 PHLDB1Q86UU1 1377 aa18.37■□□□□ 0.53
SCAF4-201ENST00000286835 BICRAQ9NZM4 1560 aa18.35■□□□□ 0.53
SCAF4-201ENST00000286835 EIF4G2P78344 907 aaKnown RBP eCLIP18.35■□□□□ 0.53
SCAF4-201ENST00000286835 PRXQ9BXM0 1461 aa18.35■□□□□ 0.53
SCAF4-201ENST00000286835 ARHGAP35Q9NRY4 1499 aa18.34■□□□□ 0.53
SCAF4-201ENST00000286835 PDS5BQ9NTI5 1447 aa18.34■□□□□ 0.53
SCAF4-201ENST00000286835 WDR97A6NE52 1622 aa18.33■□□□□ 0.52
SCAF4-201ENST00000286835 NCAPD3P42695 1498 aa18.33■□□□□ 0.52
SCAF4-201ENST00000286835 RTL5Q5HYW3 569 aaPredicted RBP18.32■□□□□ 0.52
SCAF4-201ENST00000286835 FOXD1Q16676 465 aa18.32■□□□□ 0.52
SCAF4-201ENST00000286835 TIMELESSQ9UNS1 1208 aa18.32■□□□□ 0.52
SCAF4-201ENST00000286835 HSPA5P11021 654 aaKnown RBP18.31■□□□□ 0.52
SCAF4-201ENST00000286835 NPM2Q86SE8 214 aaKnown RBP18.31■□□□□ 0.52
SCAF4-201ENST00000286835 DNAJC5BQ9UF47 199 aa18.31■□□□□ 0.52
SCAF4-201ENST00000286835 SALL2Q9Y467 1007 aaPredicted RBP18.31■□□□□ 0.52
SCAF4-201ENST00000286835 FHOD3Q2V2M9 1422 aa18.3■□□□□ 0.52
SCAF4-201ENST00000286835 FHAD1B1AJZ9 1412 aa18.28■□□□□ 0.52
SCAF4-201ENST00000286835 PPP4R2Q9NY27 417 aa18.27■□□□□ 0.51
SCAF4-201ENST00000286835 CCDC136Q96JN2 1154 aa18.26■□□□□ 0.51
SCAF4-201ENST00000286835 TOP2BQ02880 1626 aa18.26■□□□□ 0.51
SCAF4-201ENST00000286835 IGF1RP08069 1367 aa18.25■□□□□ 0.51
SCAF4-201ENST00000286835 ERICH3Q5RHP9 1530 aa18.25■□□□□ 0.51
SCAF4-201ENST00000286835 FANCD2Q9BXW9 1451 aa18.24■□□□□ 0.51
SCAF4-201ENST00000286835 UNC13AQ9UPW8 1703 aa18.23■□□□□ 0.51
SCAF4-201ENST00000286835 ANP32AP39687 249 aaKnown RBP18.23■□□□□ 0.51
SCAF4-201ENST00000286835 LRRC9Q6ZRR7 1453 aa18.2■□□□□ 0.5
SCAF4-201ENST00000286835 MSH5O43196 834 aa18.2■□□□□ 0.5
SCAF4-201ENST00000286835 CUX1P39880 1505 aa18.18■□□□□ 0.5
SCAF4-201ENST00000286835 SLC4A1APQ9BWU0 796 aaKnown RBP18.16■□□□□ 0.5
SCAF4-201ENST00000286835 MAPKBP1O60336 1514 aa18.16■□□□□ 0.5
SCAF4-201ENST00000286835 CCDC184Q52MB2 194 aa18.15■□□□□ 0.5
SCAF4-201ENST00000286835 NESP48681 1621 aa18.14■□□□□ 0.49
SCAF4-201ENST00000286835 DEKP35659 375 aaKnown RBP18.14■□□□□ 0.49
SCAF4-201ENST00000286835 TMC1Q8TDI8 760 aa18.14■□□□□ 0.49
SCAF4-201ENST00000286835 L3MBTL2Q969R5 705 aa18.13■□□□□ 0.49
SCAF4-201ENST00000286835 ZBTB47Q9UFB7 747 aaPredicted RBP18.12■□□□□ 0.49
SCAF4-201ENST00000286835 NPM1P06748 294 aaKnown RBP eCLIP18.12■□□□□ 0.49
SCAF4-201ENST00000286835 CC2D2AQ9P2K1 1620 aa18.11■□□□□ 0.49
SCAF4-201ENST00000286835 CCDC18Q5T9S5 1454 aa18.11■□□□□ 0.49
SCAF4-201ENST00000286835 NOP58Q9Y2X3 529 aaKnown RBP18.1■□□□□ 0.49
SCAF4-201ENST00000286835 WASHC2AQ641Q2 1341 aa18.1■□□□□ 0.49
SCAF4-201ENST00000286835 KDM2AQ9Y2K7 1162 aa18.1■□□□□ 0.49
SCAF4-201ENST00000286835 TIAM1Q13009 1591 aa18.09■□□□□ 0.49
SCAF4-201ENST00000286835 RAD54L2Q9Y4B4 1467 aa18.09■□□□□ 0.49
SCAF4-201ENST00000286835 PLEKHD1A6NEE1 506 aa18.08■□□□□ 0.49
SCAF4-201ENST00000286835 DAXXQ9UER7 740 aaPredicted RBP18.08■□□□□ 0.48
SCAF4-201ENST00000286835 MPHOSPH9Q99550 1183 aa18.07■□□□□ 0.48
SCAF4-201ENST00000286835 FGD5Q6ZNL6 1462 aa18.06■□□□□ 0.48
SCAF4-201ENST00000286835 FANCIQ9NVI1 1328 aa18.06■□□□□ 0.48
SCAF4-201ENST00000286835 PRKRIP1Q9H875 184 aaPredicted RBP18.05■□□□□ 0.48
SCAF4-201ENST00000286835 CFTRP13569 1480 aa18.05■□□□□ 0.48
SCAF4-201ENST00000286835 PEG3Q9GZU2 1588 aa18.05■□□□□ 0.48
SCAF4-201ENST00000286835 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.04■□□□□ 0.489e-9■■□□□ 12.8
SCAF4-201ENST00000286835 TSPY4P0CV99 314 aa18.02■□□□□ 0.48
SCAF4-201ENST00000286835 TSPY10P0CW01 314 aa18.02■□□□□ 0.48
SCAF4-201ENST00000286835 FGD6Q6ZV73 1430 aa18.02■□□□□ 0.48
SCAF4-201ENST00000286835 FMN1Q68DA7 1419 aa18.01■□□□□ 0.47
SCAF4-201ENST00000286835 CFDP1Q9UEE9 299 aaPredicted RBP18■□□□□ 0.47
SCAF4-201ENST00000286835 RTN4Q9NQC3 1192 aaKnown RBP17.99■□□□□ 0.47
SCAF4-201ENST00000286835 LAS1LQ9Y4W2 734 aaKnown RBP17.99■□□□□ 0.47
SCAF4-201ENST00000286835 UACAQ9BZF9 1416 aa17.98■□□□□ 0.47
SCAF4-201ENST00000286835 HMGXB3Q12766 1538 aa17.96■□□□□ 0.47
SCAF4-201ENST00000286835 BIVM-ERCC5R4GMW8 1640 aa17.96■□□□□ 0.47
SCAF4-201ENST00000286835 ERICH6BQ5W0A0 696 aa17.95■□□□□ 0.46
SCAF4-201ENST00000286835 C11orf95C9JLR9 678 aaPredicted RBP17.95■□□□□ 0.46
SCAF4-201ENST00000286835 PAK3O75914 559 aaPredicted RBP17.93■□□□□ 0.46
SCAF4-201ENST00000286835 ZBED9Q6R2W3 1325 aa17.92■□□□□ 0.46
SCAF4-201ENST00000286835 PCF11O94913 1555 aaKnown RBP17.92■□□□□ 0.46
SCAF4-201ENST00000286835 AQRO60306 1485 aaKnown RBP eCLIP17.91■□□□□ 0.465e-7■■■□□ 18.5
SCAF4-201ENST00000286835 CARD11Q9BXL7 1154 aa17.91■□□□□ 0.46
SCAF4-201ENST00000286835 JPH4Q96JJ6 628 aa17.89■□□□□ 0.45
SCAF4-201ENST00000286835 CCDC7Q96M83 1385 aa17.88■□□□□ 0.45
SCAF4-201ENST00000286835 CASKIN1Q8WXD9 1431 aa17.88■□□□□ 0.45
SCAF4-201ENST00000286835 NUDCQ9Y266 331 aa17.88■□□□□ 0.45
SCAF4-201ENST00000286835 KIF7Q2M1P5 1343 aa17.88■□□□□ 0.45
SCAF4-201ENST00000286835 NBPF8Q3BBV2 869 aa17.88■□□□□ 0.45
SCAF4-201ENST00000286835 GAPVD1Q14C86 1478 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms