RNA–Protein interactions for RNA: ENST00000277537.10

SEC16A-201, Transcript of SEC16 homolog A, endoplasmic reticulum export factor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene SEC16A, Length 3,910 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC16A-201ENST00000277537 CDK11AQ9UQ88 783 aaPredicted RBP12.96□□□□□ -0.34
SEC16A-201ENST00000277537 CCNB3Q8WWL7 1395 aa12.95□□□□□ -0.34
SEC16A-201ENST00000277537 FHAD1B1AJZ9 1412 aa12.95□□□□□ -0.34
SEC16A-201ENST00000277537 TOPBP1Q92547 1522 aa12.94□□□□□ -0.34
SEC16A-201ENST00000277537 POLA1P09884 1462 aaPredicted RBP12.93□□□□□ -0.34
SEC16A-201ENST00000277537 RRP7BPQ9NSQ0 103 aa12.93□□□□□ -0.34
SEC16A-201ENST00000277537 ARAP1Q96P48 1450 aa12.93□□□□□ -0.34
SEC16A-201ENST00000277537 AQRO60306 1485 aaKnown RBP eCLIP12.92□□□□□ -0.342e-7■■■■■ 38
SEC16A-201ENST00000277537 GAPVD1Q14C86 1478 aa12.91□□□□□ -0.34
SEC16A-201ENST00000277537 CNGB1Q14028 1251 aaPredicted RBP12.91□□□□□ -0.34
SEC16A-201ENST00000277537 POLR3GLQ9BT43 218 aa12.9□□□□□ -0.34
SEC16A-201ENST00000277537 ERICH3Q5RHP9 1530 aa12.88□□□□□ -0.35
SEC16A-201ENST00000277537 ARHGAP35Q9NRY4 1499 aa12.88□□□□□ -0.35
SEC16A-201ENST00000277537 SIN3AQ96ST3 1273 aa12.86□□□□□ -0.35
SEC16A-201ENST00000277537 ZNF326Q5BKZ1 582 aaKnown RBP12.86□□□□□ -0.35
SEC16A-201ENST00000277537 HIRIP3Q9BW71 556 aaPredicted RBP12.85□□□□□ -0.35
SEC16A-201ENST00000277537 SCAF1Q9H7N4 1312 aaKnown RBP12.85□□□□□ -0.35
SEC16A-201ENST00000277537 BIVM-ERCC5R4GMW8 1640 aa12.85□□□□□ -0.35
SEC16A-201ENST00000277537 DNMBPQ6XZF7 1577 aa12.83□□□□□ -0.36
SEC16A-201ENST00000277537 FMN1Q68DA7 1419 aa12.83□□□□□ -0.36
SEC16A-201ENST00000277537 URB2Q14146 1524 aaKnown RBP12.81□□□□□ -0.36
SEC16A-201ENST00000277537 KCNH8Q96L42 1107 aa12.81□□□□□ -0.36
SEC16A-201ENST00000277537 PLEKHD1A6NEE1 506 aa12.8□□□□□ -0.36
SEC16A-201ENST00000277537 TONSLQ96HA7 1378 aa12.79□□□□□ -0.36
SEC16A-201ENST00000277537 LAMC3Q9Y6N6 1575 aa12.79□□□□□ -0.36
SEC16A-201ENST00000277537 MIER1Q8N108 512 aa12.79□□□□□ -0.36
SEC16A-201ENST00000277537 CFDP1Q9UEE9 299 aaPredicted RBP12.79□□□□□ -0.36
SEC16A-201ENST00000277537 RAB3GAP2Q9H2M9 1393 aa12.78□□□□□ -0.36
SEC16A-201ENST00000277537 ABCA10Q8WWZ4 1543 aa12.78□□□□□ -0.36
SEC16A-201ENST00000277537 GTF3C3Q9Y5Q9 886 aa12.78□□□□□ -0.36
SEC16A-201ENST00000277537 JPH4Q96JJ6 628 aa12.77□□□□□ -0.37
SEC16A-201ENST00000277537 DDX10Q13206 875 aaKnown RBP12.76□□□□□ -0.37
SEC16A-201ENST00000277537 PHLDB1Q86UU1 1377 aa12.75□□□□□ -0.37
SEC16A-201ENST00000277537 MRC2Q9UBG0 1479 aa12.75□□□□□ -0.37
SEC16A-201ENST00000277537 SETD5Q9C0A6 1442 aa12.74□□□□□ -0.37
SEC16A-201ENST00000277537 TSPY4P0CV99 314 aa12.73□□□□□ -0.37
SEC16A-201ENST00000277537 TSPY10P0CW01 314 aa12.73□□□□□ -0.37
SEC16A-201ENST00000277537 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.71□□□□□ -0.371e-6■■□□□ 13
SEC16A-201ENST00000277537 SLC4A1APQ9BWU0 796 aaKnown RBP12.71□□□□□ -0.37
SEC16A-201ENST00000277537 DHX57Q6P158 1386 aaKnown RBP12.71□□□□□ -0.37
SEC16A-201ENST00000277537 LRRC9Q6ZRR7 1453 aa12.71□□□□□ -0.38
SEC16A-201ENST00000277537 GRIN2BQ13224 1484 aa12.7□□□□□ -0.38
SEC16A-201ENST00000277537 FOXD1Q16676 465 aa12.69□□□□□ -0.38
SEC16A-201ENST00000277537 CLSPNQ9HAW4 1339 aa12.69□□□□□ -0.38
SEC16A-201ENST00000277537 ACIN1Q9UKV3 1341 aaKnown RBP12.68□□□□□ -0.38
SEC16A-201ENST00000277537 CARMIL2Q6F5E8 1435 aa12.67□□□□□ -0.38
SEC16A-201ENST00000277537 ZNF608Q9ULD9 1512 aaPredicted RBP12.67□□□□□ -0.38
SEC16A-201ENST00000277537 CASKIN1Q8WXD9 1431 aa12.66□□□□□ -0.38
SEC16A-201ENST00000277537 ANP32CO43423 234 aa12.66□□□□□ -0.38
SEC16A-201ENST00000277537 IFT140Q96RY7 1462 aa12.64□□□□□ -0.39
SEC16A-201ENST00000277537 SNAPC4Q5SXM2 1469 aa12.63□□□□□ -0.39
SEC16A-201ENST00000277537 KDM2AQ9Y2K7 1162 aa12.63□□□□□ -0.39
SEC16A-201ENST00000277537 ZNF644Q9H582 1327 aaPredicted RBP12.63□□□□□ -0.39
SEC16A-201ENST00000277537 RRBP1Q9P2E9 1410 aaKnown RBP12.63□□□□□ -0.39
SEC16A-201ENST00000277537 NPM1P06748 294 aaKnown RBP eCLIP12.62□□□□□ -0.39
SEC16A-201ENST00000277537 TIAM1Q13009 1591 aa12.61□□□□□ -0.39
SEC16A-201ENST00000277537 FYCO1Q9BQS8 1478 aa12.6□□□□□ -0.39
SEC16A-201ENST00000277537 FGD6Q6ZV73 1430 aa12.6□□□□□ -0.39
SEC16A-201ENST00000277537 PCF11O94913 1555 aaKnown RBP12.58□□□□□ -0.4
SEC16A-201ENST00000277537 KIF21AQ7Z4S6 1674 aa12.58□□□□□ -0.4
SEC16A-201ENST00000277537 EFCAB5A4FU69 1503 aa12.58□□□□□ -0.4
SEC16A-201ENST00000277537 NEFLP07196 543 aa12.57□□□□□ -0.4
SEC16A-201ENST00000277537 NCOA2Q15596 1464 aa12.57□□□□□ -0.4
SEC16A-201ENST00000277537 CUL7Q14999 1698 aa12.57□□□□□ -0.4
SEC16A-201ENST00000277537 HNRNPMP52272 730 aaKnown RBP eCLIP12.57□□□□□ -0.42e-6■■■□□ 17
SEC16A-201ENST00000277537 CCDC18Q5T9S5 1454 aa12.57□□□□□ -0.4
SEC16A-201ENST00000277537 MPHOSPH9Q99550 1183 aa12.56□□□□□ -0.4
SEC16A-201ENST00000277537 RGL3Q3MIN7 710 aa12.56□□□□□ -0.4
SEC16A-201ENST00000277537 PTPRGP23470 1445 aa12.55□□□□□ -0.4
SEC16A-201ENST00000277537 MYOM3Q5VTT5 1437 aa12.55□□□□□ -0.4
SEC16A-201ENST00000277537 PRDM2Q13029 1718 aa12.55□□□□□ -0.4
SEC16A-201ENST00000277537 PPP1R15AO75807 674 aaPredicted RBP12.53□□□□□ -0.4
SEC16A-201ENST00000277537 EIF4G2P78344 907 aaKnown RBP eCLIP12.53□□□□□ -0.4
SEC16A-201ENST00000277537 CDK13Q14004 1512 aaKnown RBP12.52□□□□□ -0.41
SEC16A-201ENST00000277537 PKD2Q13563 968 aa12.51□□□□□ -0.41
SEC16A-201ENST00000277537 IQGAP2Q13576 1575 aa12.51□□□□□ -0.41
SEC16A-201ENST00000277537 KIAA0586Q9BVV6 1533 aa12.5□□□□□ -0.41
SEC16A-201ENST00000277537 BCANQ96GW7 911 aa12.5□□□□□ -0.41
SEC16A-201ENST00000277537 CHGAP10645 457 aaKnown RBP12.49□□□□□ -0.41
SEC16A-201ENST00000277537 PRG4Q92954 1404 aaPredicted RBP12.49□□□□□ -0.41
SEC16A-201ENST00000277537 GRIN2AQ12879 1464 aa12.48□□□□□ -0.41
SEC16A-201ENST00000277537 TIMELESSQ9UNS1 1208 aa12.48□□□□□ -0.41
SEC16A-201ENST00000277537 L3MBTL2Q969R5 705 aa12.47□□□□□ -0.41
SEC16A-201ENST00000277537 EPRSP07814 1512 aaKnown RBP12.47□□□□□ -0.41
SEC16A-201ENST00000277537 SENP3Q9H4L4 574 aaPredicted RBP12.46□□□□□ -0.41
SEC16A-201ENST00000277537 NUP155O75694 1391 aa12.46□□□□□ -0.42
SEC16A-201ENST00000277537 PLB1Q6P1J6 1458 aa12.45□□□□□ -0.42
SEC16A-201ENST00000277537 FAM9BQ8IZU0 186 aa12.44□□□□□ -0.42
SEC16A-201ENST00000277537 ANKRD30AQ9BXX3 1397 aa12.44□□□□□ -0.42
SEC16A-201ENST00000277537 SYNJ2O15056 1496 aa12.44□□□□□ -0.42
SEC16A-201ENST00000277537 HSPA5P11021 654 aaKnown RBP12.43□□□□□ -0.42
SEC16A-201ENST00000277537 MAP3K1Q13233 1512 aa12.43□□□□□ -0.42
SEC16A-201ENST00000277537 DCAF11Q8TEB1 546 aa12.43□□□□□ -0.42
SEC16A-201ENST00000277537 HNRNPUQ00839 825 aaKnown RBP eCLIP12.42□□□□□ -0.42
SEC16A-201ENST00000277537 SENP3-EIF4A1A0A087X0R7 540 aa12.41□□□□□ -0.42
SEC16A-201ENST00000277537 EFCAB2Q5VUJ9 269 aa12.41□□□□□ -0.42
SEC16A-201ENST00000277537 EHBP1L1Q8N3D4 1523 aa12.41□□□□□ -0.42
SEC16A-201ENST00000277537 ABCA5Q8WWZ7 1642 aa12.41□□□□□ -0.42
SEC16A-201ENST00000277537 MAGI1Q96QZ7 1491 aaPredicted RBP12.41□□□□□ -0.42
SEC16A-201ENST00000277537 CARD11Q9BXL7 1154 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms