RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 SOGA1O94964 1423 aa12.78□□□□□ -0.36
PDGFC-201ENST00000274071 GLIPR1L2Q4G1C9 344 aa12.78□□□□□ -0.36
PDGFC-201ENST00000274071 VSIG10Q8N0Z9 540 aa12.78□□□□□ -0.36
PDGFC-201ENST00000274071 IRX6P78412 446 aaPredicted RBP12.75□□□□□ -0.37
PDGFC-201ENST00000274071 RSPH6AQ9H0K4 717 aa12.75□□□□□ -0.37
PDGFC-201ENST00000274071 WASHC2CQ9Y4E1 1318 aa12.75□□□□□ -0.37
PDGFC-201ENST00000274071 BRPF3Q9ULD4 1205 aa12.75□□□□□ -0.37
PDGFC-201ENST00000274071 SYNJ1O43426 1573 aa12.74□□□□□ -0.37
PDGFC-201ENST00000274071 RUSC2Q8N2Y8 1516 aa12.73□□□□□ -0.37
PDGFC-201ENST00000274071 EEA1Q15075 1411 aa12.72□□□□□ -0.37
PDGFC-201ENST00000274071 IPO9Q96P70 1041 aaKnown RBP12.72□□□□□ -0.37
PDGFC-201ENST00000274071 ZBTB47Q9UFB7 747 aaPredicted RBP12.69□□□□□ -0.38
PDGFC-201ENST00000274071 CC2D2AQ9P2K1 1620 aa12.67□□□□□ -0.38
PDGFC-201ENST00000274071 PPP4R2Q9NY27 417 aa12.67□□□□□ -0.38
PDGFC-201ENST00000274071 CFTRP13569 1480 aa12.65□□□□□ -0.38
PDGFC-201ENST00000274071 USP35Q9P2H5 1018 aa12.65□□□□□ -0.38
PDGFC-201ENST00000274071 ANP32AP39687 249 aaKnown RBP12.64□□□□□ -0.39
PDGFC-201ENST00000274071 CEP162Q5TB80 1403 aa12.64□□□□□ -0.39
PDGFC-201ENST00000274071 TOP2BQ02880 1626 aa12.64□□□□□ -0.39
PDGFC-201ENST00000274071 NEFMP07197 916 aa12.63□□□□□ -0.39
PDGFC-201ENST00000274071 DDX10Q13206 875 aaKnown RBP12.63□□□□□ -0.39
PDGFC-201ENST00000274071 UBTFP17480 764 aaKnown RBP12.63□□□□□ -0.39
PDGFC-201ENST00000274071 TNIKQ9UKE5 1360 aa12.62□□□□□ -0.39
PDGFC-201ENST00000274071 DHX57Q6P158 1386 aaKnown RBP12.61□□□□□ -0.39
PDGFC-201ENST00000274071 B4GALNT3Q6L9W6 998 aa12.61□□□□□ -0.39
PDGFC-201ENST00000274071 CCER2I3L3R5 266 aa12.61□□□□□ -0.39
PDGFC-201ENST00000274071 A0A0U1RQG5 324 aaPredicted RBP12.6□□□□□ -0.39
PDGFC-201ENST00000274071 BIVM-ERCC5R4GMW8 1640 aa12.6□□□□□ -0.39
PDGFC-201ENST00000274071 GOLGA3Q08378 1498 aa12.59□□□□□ -0.39
PDGFC-201ENST00000274071 FGD1P98174 961 aa12.58□□□□□ -0.4
PDGFC-201ENST00000274071 CADPSQ9ULU8 1353 aa12.58□□□□□ -0.4
PDGFC-201ENST00000274071 CUX1P39880 1505 aa12.57□□□□□ -0.4
PDGFC-201ENST00000274071 RBM10P98175 930 aaKnown RBP12.57□□□□□ -0.4
PDGFC-201ENST00000274071 CEP164Q9UPV0 1460 aa12.56□□□□□ -0.4
PDGFC-201ENST00000274071 GSE1Q14687 1217 aa12.56□□□□□ -0.4
PDGFC-201ENST00000274071 FAM43AQ8N2R8 423 aa12.56□□□□□ -0.4
PDGFC-201ENST00000274071 LAS1LQ9Y4W2 734 aaKnown RBP12.56□□□□□ -0.4
PDGFC-201ENST00000274071 AAMPQ13685 434 aa12.55□□□□□ -0.4
PDGFC-201ENST00000274071 PRDM2Q13029 1718 aa12.54□□□□□ -0.4
PDGFC-201ENST00000274071 PPP1R15AO75807 674 aaPredicted RBP12.54□□□□□ -0.4
PDGFC-201ENST00000274071 PDE4CQ08493 712 aa12.54□□□□□ -0.4
PDGFC-201ENST00000274071 KIF21BO75037 1637 aa12.54□□□□□ -0.4
PDGFC-201ENST00000274071 ANP32CO43423 234 aa12.51□□□□□ -0.41
PDGFC-201ENST00000274071 HSP90AA2PQ14568 343 aaPredicted RBP12.5□□□□□ -0.41
PDGFC-201ENST00000274071 HNRNPUQ00839 825 aaKnown RBP eCLIP12.5□□□□□ -0.41
PDGFC-201ENST00000274071 RAPGEF2Q9Y4G8 1499 aa12.49□□□□□ -0.41
PDGFC-201ENST00000274071 PPM1GO15355 546 aaPredicted RBP12.48□□□□□ -0.41
PDGFC-201ENST00000274071 FRAT1Q92837 279 aaPredicted RBP12.48□□□□□ -0.41
PDGFC-201ENST00000274071 RRP9O43818 475 aaKnown RBP12.47□□□□□ -0.41
PDGFC-201ENST00000274071 KIF27Q86VH2 1401 aa12.45□□□□□ -0.42
PDGFC-201ENST00000274071 DCAF11Q8TEB1 546 aa12.44□□□□□ -0.42
PDGFC-201ENST00000274071 FANCD2Q9BXW9 1451 aa12.44□□□□□ -0.42
PDGFC-201ENST00000274071 CLIP1P30622 1438 aa12.43□□□□□ -0.42
PDGFC-201ENST00000274071 PRXQ9BXM0 1461 aa12.43□□□□□ -0.42
PDGFC-201ENST00000274071 PDIA4P13667 645 aaKnown RBP12.43□□□□□ -0.42
PDGFC-201ENST00000274071 NESP48681 1621 aa12.42□□□□□ -0.42
PDGFC-201ENST00000274071 RANGAP1P46060 587 aaPredicted RBP12.42□□□□□ -0.42
PDGFC-201ENST00000274071 NPM2Q86SE8 214 aaKnown RBP12.41□□□□□ -0.42
PDGFC-201ENST00000274071 BCL11BQ9C0K0 894 aaPredicted RBP12.41□□□□□ -0.42
PDGFC-201ENST00000274071 ERICH3Q5RHP9 1530 aa12.4□□□□□ -0.42
PDGFC-201ENST00000274071 DNAJC5BQ9UF47 199 aa12.4□□□□□ -0.42
PDGFC-201ENST00000274071 RRAGDQ9NQL2 400 aaPredicted RBP12.39□□□□□ -0.43
PDGFC-201ENST00000274071 FGD5Q6ZNL6 1462 aa12.39□□□□□ -0.43
PDGFC-201ENST00000274071 SIN3AQ96ST3 1273 aa12.39□□□□□ -0.43
PDGFC-201ENST00000274071 HSP90AA1P07900 732 aaKnown RBP12.39□□□□□ -0.43
PDGFC-201ENST00000274071 NFKBIBQ15653 356 aa12.38□□□□□ -0.43
PDGFC-201ENST00000274071 CUX2O14529 1486 aa12.38□□□□□ -0.43
PDGFC-201ENST00000274071 HIRIP3Q9BW71 556 aaPredicted RBP12.37□□□□□ -0.43
PDGFC-201ENST00000274071 LAMC3Q9Y6N6 1575 aa12.35□□□□□ -0.43
PDGFC-201ENST00000274071 IGF1RP08069 1367 aa12.35□□□□□ -0.43
PDGFC-201ENST00000274071 NAP1L5Q96NT1 182 aaPredicted RBP12.34□□□□□ -0.43
PDGFC-201ENST00000274071 PRDM4Q9UKN5 801 aa12.34□□□□□ -0.43
PDGFC-201ENST00000274071 VPS8Q8N3P4 1428 aa12.34□□□□□ -0.43
PDGFC-201ENST00000274071 DNMBPQ6XZF7 1577 aa12.33□□□□□ -0.44
PDGFC-201ENST00000274071 TOPBP1Q92547 1522 aa12.32□□□□□ -0.44
PDGFC-201ENST00000274071 AEBP2Q6ZN18 517 aaPredicted RBP12.31□□□□□ -0.44
PDGFC-201ENST00000274071 WDR97A6NE52 1622 aa12.3□□□□□ -0.44
PDGFC-201ENST00000274071 RAD54L2Q9Y4B4 1467 aa12.3□□□□□ -0.44
PDGFC-201ENST00000274071 POLA1P09884 1462 aaPredicted RBP12.29□□□□□ -0.44
PDGFC-201ENST00000274071 PDS5BQ9NTI5 1447 aa12.29□□□□□ -0.44
PDGFC-201ENST00000274071 CARMIL1Q5VZK9 1371 aa12.29□□□□□ -0.44
PDGFC-201ENST00000274071 RGS3P49796 1198 aa12.28□□□□□ -0.44
PDGFC-201ENST00000274071 PNNQ9H307 717 aaKnown RBP12.27□□□□□ -0.45
PDGFC-201ENST00000274071 PDE4AP27815 886 aa12.27□□□□□ -0.45
PDGFC-201ENST00000274071 URB2Q14146 1524 aaKnown RBP12.27□□□□□ -0.45
PDGFC-201ENST00000274071 ABCA10Q8WWZ4 1543 aa12.26□□□□□ -0.45
PDGFC-201ENST00000274071 CALD1Q05682 793 aaKnown RBP12.26□□□□□ -0.45
PDGFC-201ENST00000274071 ARAP1Q96P48 1450 aa12.25□□□□□ -0.45
PDGFC-201ENST00000274071 BACH2Q9BYV9 841 aa12.24□□□□□ -0.45
PDGFC-201ENST00000274071 FRAT2O75474 233 aaPredicted RBP12.22□□□□□ -0.45
PDGFC-201ENST00000274071 KIF21AQ7Z4S6 1674 aa12.22□□□□□ -0.45
PDGFC-201ENST00000274071 CLCN1P35523 988 aa12.22□□□□□ -0.45
PDGFC-201ENST00000274071 CENPJQ9HC77 1338 aaPredicted RBP12.22□□□□□ -0.45
PDGFC-201ENST00000274071 MAPKBP1O60336 1514 aa12.21□□□□□ -0.45
PDGFC-201ENST00000274071 ARHGAP35Q9NRY4 1499 aa12.21□□□□□ -0.45
PDGFC-201ENST00000274071 TCERG1O14776 1098 aaKnown RBP12.21□□□□□ -0.45
PDGFC-201ENST00000274071 PDCL3Q9H2J4 239 aa12.21□□□□□ -0.45
PDGFC-201ENST00000274071 ZBED9Q6R2W3 1325 aa12.21□□□□□ -0.46
PDGFC-201ENST00000274071 SLC4A3P48751 1232 aa12.21□□□□□ -0.46
PDGFC-201ENST00000274071 DDRGK1Q96HY6 314 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms