RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 NISCHQ9Y2I1 1504 aa17.38■□□□□ 0.37
PDGFC-201ENST00000274071 PELP1Q8IZL8 1130 aaKnown RBP16.23■□□□□ 0.19
PDGFC-201ENST00000274071 HRCP23327 699 aa15.79■□□□□ 0.12
PDGFC-201ENST00000274071 MYT1Q01538 1121 aa15.79■□□□□ 0.12
PDGFC-201ENST00000274071 PPARGC1BQ86YN6 1023 aaKnown RBP15.45■□□□□ 0.06
PDGFC-201ENST00000274071 SCAF1Q9H7N4 1312 aaKnown RBP15.34■□□□□ 0.05
PDGFC-201ENST00000274071 PCGF6Q9BYE7 350 aa15.13■□□□□ 0.01
PDGFC-201ENST00000274071 TTBK1Q5TCY1 1321 aaPredicted RBP15.03■□□□□ -0
PDGFC-201ENST00000274071 CCDC180Q9P1Z9 1646 aa14.95□□□□□ -0.02
PDGFC-201ENST00000274071 ACIN1Q9UKV3 1341 aaKnown RBP14.73□□□□□ -0.05
PDGFC-201ENST00000274071 BCL11AQ9H165 835 aa14.73□□□□□ -0.05
PDGFC-201ENST00000274071 MYO15BQ96JP2 1530 aa14.7□□□□□ -0.06
PDGFC-201ENST00000274071 PRKCSHP14314 528 aaPredicted RBP14.69□□□□□ -0.06
PDGFC-201ENST00000274071 NEUROD1Q13562 356 aa14.67□□□□□ -0.06
PDGFC-201ENST00000274071 GTF3C3Q9Y5Q9 886 aa14.65□□□□□ -0.06
PDGFC-201ENST00000274071 ZCCHC6Q5VYS8 1495 aaKnown RBP14.63□□□□□ -0.07
PDGFC-201ENST00000274071 FAM9AQ8IZU1 332 aaPredicted RBP14.61□□□□□ -0.07
PDGFC-201ENST00000274071 ZEB1P37275 1124 aaPredicted RBP14.54□□□□□ -0.08
PDGFC-201ENST00000274071 CENPBP07199 599 aaPredicted RBP14.54□□□□□ -0.08
PDGFC-201ENST00000274071 SHROOM4Q9ULL8 1493 aa14.52□□□□□ -0.08
PDGFC-201ENST00000274071 DCAF8L2P0C7V8 631 aa14.46□□□□□ -0.09
PDGFC-201ENST00000274071 TRIM26Q12899 539 aaPredicted RBP14.44□□□□□ -0.1
PDGFC-201ENST00000274071 DCAF1Q9Y4B6 1507 aa14.42□□□□□ -0.1
PDGFC-201ENST00000274071 CHIC1Q5VXU3 224 aa14.34□□□□□ -0.11
PDGFC-201ENST00000274071 SUPT5HO00267 1087 aaKnown RBP14.32□□□□□ -0.12
PDGFC-201ENST00000274071 ERICH6Q7L0X2 663 aa14.29□□□□□ -0.12
PDGFC-201ENST00000274071 ANP32EQ9BTT0 268 aa14.27□□□□□ -0.13
PDGFC-201ENST00000274071 APLP2Q06481 763 aa14.23□□□□□ -0.13
PDGFC-201ENST00000274071 CSRNP3Q8WYN3 585 aa14.16□□□□□ -0.14
PDGFC-201ENST00000274071 LOC105371045A0A1W2PR82 267 aa14.12□□□□□ -0.15
PDGFC-201ENST00000274071 DIEXFQ68CQ4 756 aaKnown RBP14.1□□□□□ -0.15
PDGFC-201ENST00000274071 ABCC9O60706 1549 aa14.05□□□□□ -0.16
PDGFC-201ENST00000274071 YTHDC1Q96MU7 727 aaKnown RBP13.93□□□□□ -0.18
PDGFC-201ENST00000274071 TSHZ2Q9NRE2 1034 aa13.91□□□□□ -0.18
PDGFC-201ENST00000274071 SCRIBQ14160 1630 aa13.9□□□□□ -0.18
PDGFC-201ENST00000274071 NACADO15069 1562 aa13.89□□□□□ -0.19
PDGFC-201ENST00000274071 TRIM41Q8WV44 630 aa13.81□□□□□ -0.2
PDGFC-201ENST00000274071 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.77□□□□□ -0.2
PDGFC-201ENST00000274071 SUPT16HQ9Y5B9 1047 aaKnown RBP13.77□□□□□ -0.2
PDGFC-201ENST00000274071 ANO8Q9HCE9 1232 aaPredicted RBP13.77□□□□□ -0.21
PDGFC-201ENST00000274071 CCER1Q8TC90 406 aaPredicted RBP13.74□□□□□ -0.21
PDGFC-201ENST00000274071 RB1CC1Q8TDY2 1594 aa13.72□□□□□ -0.21
PDGFC-201ENST00000274071 MIER1Q8N108 512 aa13.69□□□□□ -0.22
PDGFC-201ENST00000274071 CLSPNQ9HAW4 1339 aa13.66□□□□□ -0.22
PDGFC-201ENST00000274071 ZNF316A6NFI3 1004 aaPredicted RBP13.65□□□□□ -0.22
PDGFC-201ENST00000274071 RSF1Q96T23 1441 aaPredicted RBP13.62□□□□□ -0.23
PDGFC-201ENST00000274071 UBE2Q2Q8WVN8 375 aa13.56□□□□□ -0.24
PDGFC-201ENST00000274071 CECR2Q9BXF3 1484 aa13.54□□□□□ -0.24
PDGFC-201ENST00000274071 SALL2Q9Y467 1007 aaPredicted RBP13.52□□□□□ -0.24
PDGFC-201ENST00000274071 RBM19Q9Y4C8 960 aaKnown RBP13.52□□□□□ -0.24
PDGFC-201ENST00000274071 MSH5O43196 834 aa13.49□□□□□ -0.25
PDGFC-201ENST00000274071 UNC13AQ9UPW8 1703 aa13.49□□□□□ -0.25
PDGFC-201ENST00000274071 MROH2BQ7Z745 1585 aa13.48□□□□□ -0.25
PDGFC-201ENST00000274071 CCDC136Q96JN2 1154 aa13.45□□□□□ -0.26
PDGFC-201ENST00000274071 DEKP35659 375 aaKnown RBP13.42□□□□□ -0.26
PDGFC-201ENST00000274071 SLC24A1O60721 1099 aa13.41□□□□□ -0.26
PDGFC-201ENST00000274071 EIF5BO60841 1220 aaKnown RBP13.4□□□□□ -0.26
PDGFC-201ENST00000274071 WIZO95785 1651 aa13.38□□□□□ -0.27
PDGFC-201ENST00000274071 BAZ1AQ9NRL2 1556 aaPredicted RBP13.38□□□□□ -0.27
PDGFC-201ENST00000274071 MYT1LQ9UL68 1186 aa13.38□□□□□ -0.27
PDGFC-201ENST00000274071 PABPN1Q86U42 306 aaKnown RBP eCLIP13.36□□□□□ -0.27
PDGFC-201ENST00000274071 ERICH6BQ5W0A0 696 aa13.36□□□□□ -0.27
PDGFC-201ENST00000274071 BCANQ96GW7 911 aa13.36□□□□□ -0.27
PDGFC-201ENST00000274071 BICRAQ9NZM4 1560 aa13.33□□□□□ -0.28
PDGFC-201ENST00000274071 SMARCA4P51532 1647 aa13.29□□□□□ -0.28
PDGFC-201ENST00000274071 FANCIQ9NVI1 1328 aa13.26□□□□□ -0.29
PDGFC-201ENST00000274071 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.26□□□□□ -0.29
PDGFC-201ENST00000274071 FKBP8Q14318 412 aa13.25□□□□□ -0.29
PDGFC-201ENST00000274071 EHMT2Q96KQ7 1210 aa13.23□□□□□ -0.29
PDGFC-201ENST00000274071 PKNOX2Q96KN3 472 aa13.21□□□□□ -0.29
PDGFC-201ENST00000274071 TOP2AP11388 1531 aaKnown RBP13.19□□□□□ -0.3
PDGFC-201ENST00000274071 PLEKHG5O94827 1062 aa13.18□□□□□ -0.3
PDGFC-201ENST00000274071 ITGAEP38570 1179 aa13.17□□□□□ -0.3
PDGFC-201ENST00000274071 IL27Q8NEV9 243 aa13.17□□□□□ -0.3
PDGFC-201ENST00000274071 DAXXQ9UER7 740 aaPredicted RBP13.16□□□□□ -0.3
PDGFC-201ENST00000274071 RTN4Q9NQC3 1192 aaKnown RBP13.14□□□□□ -0.31
PDGFC-201ENST00000274071 CCDC88BA6NC98 1476 aa13.12□□□□□ -0.31
PDGFC-201ENST00000274071 SMARCA2P51531 1590 aa13.1□□□□□ -0.31
PDGFC-201ENST00000274071 PEG3Q9GZU2 1588 aa13.08□□□□□ -0.32
PDGFC-201ENST00000274071 NBR1Q14596 966 aa13.06□□□□□ -0.32
PDGFC-201ENST00000274071 EIF4G1Q04637 1599 aaKnown RBP13.06□□□□□ -0.32
PDGFC-201ENST00000274071 PODXL2Q9NZ53 605 aa13.05□□□□□ -0.32
PDGFC-201ENST00000274071 NEFLP07196 543 aa13.04□□□□□ -0.32
PDGFC-201ENST00000274071 KCNH8Q96L42 1107 aa13.04□□□□□ -0.32
PDGFC-201ENST00000274071 ATAD2BQ9ULI0 1458 aa13.03□□□□□ -0.32
PDGFC-201ENST00000274071 CDK11AQ9UQ88 783 aaPredicted RBP12.99□□□□□ -0.33
PDGFC-201ENST00000274071 BAZ1BQ9UIG0 1483 aaKnown RBP12.98□□□□□ -0.33
PDGFC-201ENST00000274071 ABCC8Q09428 1581 aa12.96□□□□□ -0.34
PDGFC-201ENST00000274071 NOP58Q9Y2X3 529 aaKnown RBP12.94□□□□□ -0.34
PDGFC-201ENST00000274071 PAK3O75914 559 aaPredicted RBP12.93□□□□□ -0.34
PDGFC-201ENST00000274071 RTL5Q5HYW3 569 aaPredicted RBP12.89□□□□□ -0.35
PDGFC-201ENST00000274071 ZMYND15Q9H091 742 aa12.86□□□□□ -0.35
PDGFC-201ENST00000274071 WRNQ14191 1432 aaPredicted RBP eCLIP12.85□□□□□ -0.35
PDGFC-201ENST00000274071 NCAPD3P42695 1498 aa12.85□□□□□ -0.35
PDGFC-201ENST00000274071 TIMELESSQ9UNS1 1208 aa12.84□□□□□ -0.35
PDGFC-201ENST00000274071 HNRNPUL2Q1KMD3 747 aaKnown RBP12.83□□□□□ -0.36
PDGFC-201ENST00000274071 C11orf95C9JLR9 678 aaPredicted RBP12.83□□□□□ -0.36
PDGFC-201ENST00000274071 HMGXB3Q12766 1538 aa12.82□□□□□ -0.36
PDGFC-201ENST00000274071 TRIM52Q96A61 297 aa12.8□□□□□ -0.36
PDGFC-201ENST00000274071 WASHC2AQ641Q2 1341 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms