RNA–Protein interactions for RNA: ENST00000265896.9

SQLE-201, Transcript of squalene epoxidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQLE, Length 2,961 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-201ENST00000265896 TSHZ2Q9NRE2 1034 aa24.02■■□□□ 1.44
SQLE-201ENST00000265896 NCAPD3P42695 1498 aa23.99■■□□□ 1.43
SQLE-201ENST00000265896 CFTRP13569 1480 aa23.98■■□□□ 1.43
SQLE-201ENST00000265896 MAPKBP1O60336 1514 aa23.97■■□□□ 1.43
SQLE-201ENST00000265896 ARID3CA6NKF2 412 aa23.97■■□□□ 1.43
SQLE-201ENST00000265896 FHOD3Q2V2M9 1422 aa23.96■■□□□ 1.43
SQLE-201ENST00000265896 SETD5Q9C0A6 1442 aa23.96■■□□□ 1.43
SQLE-201ENST00000265896 WDR97A6NE52 1622 aa23.94■■□□□ 1.42
SQLE-201ENST00000265896 FGD5Q6ZNL6 1462 aa23.89■■□□□ 1.42
SQLE-201ENST00000265896 LRRC9Q6ZRR7 1453 aa23.87■■□□□ 1.41
SQLE-201ENST00000265896 RAD54L2Q9Y4B4 1467 aa23.87■■□□□ 1.41
SQLE-201ENST00000265896 IRX6P78412 446 aaPredicted RBP23.85■■□□□ 1.41
SQLE-201ENST00000265896 CHIC2Q9UKJ5 165 aa23.85■■□□□ 1.41
SQLE-201ENST00000265896 TIAM1Q13009 1591 aa23.84■■□□□ 1.41
SQLE-201ENST00000265896 CNGB1Q14028 1251 aaPredicted RBP23.82■■□□□ 1.4
SQLE-201ENST00000265896 CADPSQ9ULU8 1353 aa23.82■■□□□ 1.4
SQLE-201ENST00000265896 HMGXB3Q12766 1538 aa23.81■■□□□ 1.4
SQLE-201ENST00000265896 PPP1R15AO75807 674 aaPredicted RBP23.81■■□□□ 1.4
SQLE-201ENST00000265896 ANP32CO43423 234 aa23.79■■□□□ 1.4
SQLE-201ENST00000265896 MYT1Q01538 1121 aa23.78■■□□□ 1.4
SQLE-201ENST00000265896 RRP7BPQ9NSQ0 103 aa23.76■■□□□ 1.39
SQLE-201ENST00000265896 TONSLQ96HA7 1378 aa23.72■■□□□ 1.39
SQLE-201ENST00000265896 PCF11O94913 1555 aaKnown RBP23.72■■□□□ 1.39
SQLE-201ENST00000265896 NEFLP07196 543 aa23.71■■□□□ 1.39
SQLE-201ENST00000265896 FOXD1Q16676 465 aa23.7■■□□□ 1.38
SQLE-201ENST00000265896 NESP48681 1621 aa23.69■■□□□ 1.38
SQLE-201ENST00000265896 SENP3-EIF4A1A0A087X0R7 540 aa23.68■■□□□ 1.38
SQLE-201ENST00000265896 TDRD9Q8NDG6 1382 aaKnown RBP23.68■■□□□ 1.38
SQLE-201ENST00000265896 MTUS2Q5JR59 1369 aa23.67■■□□□ 1.38
SQLE-201ENST00000265896 FHAD1B1AJZ9 1412 aa23.67■■□□□ 1.38
SQLE-201ENST00000265896 DNAJC5BQ9UF47 199 aa23.67■■□□□ 1.38
SQLE-201ENST00000265896 HNRNPUQ00839 825 aaKnown RBP eCLIP23.64■■□□□ 1.38
SQLE-201ENST00000265896 PTPRKQ15262 1439 aa23.64■■□□□ 1.37
SQLE-201ENST00000265896 FANCD2Q9BXW9 1451 aa23.64■■□□□ 1.37
SQLE-201ENST00000265896 RBM19Q9Y4C8 960 aaKnown RBP23.55■■□□□ 1.36
SQLE-201ENST00000265896 CCDC184Q52MB2 194 aa23.55■■□□□ 1.36
SQLE-201ENST00000265896 ANP32EQ9BTT0 268 aa23.55■■□□□ 1.36
SQLE-201ENST00000265896 AQRO60306 1485 aaKnown RBP eCLIP23.54■■□□□ 1.364e-12■■■■□ 26.3
SQLE-201ENST00000265896 FGD6Q6ZV73 1430 aa23.54■■□□□ 1.36
SQLE-201ENST00000265896 CCDC18Q5T9S5 1454 aa23.53■■□□□ 1.36
SQLE-201ENST00000265896 POLA1P09884 1462 aaPredicted RBP23.52■■□□□ 1.36
SQLE-201ENST00000265896 POLR3GLQ9BT43 218 aa23.5■■□□□ 1.35
SQLE-201ENST00000265896 HSPA5P11021 654 aaKnown RBP23.49■■□□□ 1.35
SQLE-201ENST00000265896 FAM9BQ8IZU0 186 aa23.49■■□□□ 1.35
SQLE-201ENST00000265896 CASKIN1Q8WXD9 1431 aa23.47■■□□□ 1.35
SQLE-201ENST00000265896 MAP3K1Q13233 1512 aa23.47■■□□□ 1.35
SQLE-201ENST00000265896 CCER2I3L3R5 266 aa23.46■■□□□ 1.35
SQLE-201ENST00000265896 CC2D2AQ9P2K1 1620 aa23.44■■□□□ 1.34
SQLE-201ENST00000265896 TOPBP1Q92547 1522 aa23.43■■□□□ 1.34
SQLE-201ENST00000265896 WASHC2AQ641Q2 1341 aa23.43■■□□□ 1.34
SQLE-201ENST00000265896 FYCO1Q9BQS8 1478 aa23.42■■□□□ 1.34
SQLE-201ENST00000265896 C11orf95C9JLR9 678 aaPredicted RBP23.42■■□□□ 1.34
SQLE-201ENST00000265896 TIMELESSQ9UNS1 1208 aa23.42■■□□□ 1.34
SQLE-201ENST00000265896 ZNF326Q5BKZ1 582 aaKnown RBP23.39■■□□□ 1.34
SQLE-201ENST00000265896 NAIPQ13075 1403 aa23.39■■□□□ 1.34
SQLE-201ENST00000265896 CFAP43Q8NDM7 1665 aa23.39■■□□□ 1.33
SQLE-201ENST00000265896 NCOA2Q15596 1464 aa23.38■■□□□ 1.33
SQLE-201ENST00000265896 L3MBTL2Q969R5 705 aa23.37■■□□□ 1.33
SQLE-201ENST00000265896 FMN1Q68DA7 1419 aa23.37■■□□□ 1.33
SQLE-201ENST00000265896 UACAQ9BZF9 1416 aa23.36■■□□□ 1.33
SQLE-201ENST00000265896 ABCA10Q8WWZ4 1543 aa23.34■■□□□ 1.33
SQLE-201ENST00000265896 HFM1A2PYH4 1435 aa23.33■■□□□ 1.33
SQLE-201ENST00000265896 ZNF644Q9H582 1327 aaPredicted RBP23.33■■□□□ 1.32
SQLE-201ENST00000265896 SNAPC4Q5SXM2 1469 aa23.32■■□□□ 1.32
SQLE-201ENST00000265896 MSH5O43196 834 aa23.31■■□□□ 1.32
SQLE-201ENST00000265896 MPHOSPH9Q99550 1183 aa23.31■■□□□ 1.32
SQLE-201ENST00000265896 MYOM3Q5VTT5 1437 aa23.3■■□□□ 1.32
SQLE-201ENST00000265896 EIF4G2P78344 907 aaKnown RBP eCLIP23.3■■□□□ 1.32
SQLE-201ENST00000265896 B4GALNT3Q6L9W6 998 aa23.28■■□□□ 1.32
SQLE-201ENST00000265896 MRS2Q9HD23 443 aa23.28■■□□□ 1.32
SQLE-201ENST00000265896 DNMBPQ6XZF7 1577 aa23.28■■□□□ 1.32
SQLE-201ENST00000265896 PTPN23Q9H3S7 1636 aa23.28■■□□□ 1.32
SQLE-201ENST00000265896 PRDM2Q13029 1718 aa23.27■■□□□ 1.32
SQLE-201ENST00000265896 URB2Q14146 1524 aaKnown RBP23.26■■□□□ 1.31
SQLE-201ENST00000265896 NBPF8Q3BBV2 869 aa23.26■■□□□ 1.31
SQLE-201ENST00000265896 ZNF777Q9ULD5 760 aaPredicted RBP23.24■■□□□ 1.31
SQLE-201ENST00000265896 GAPVD1Q14C86 1478 aa23.23■■□□□ 1.31
SQLE-201ENST00000265896 EFCAB5A4FU69 1503 aa23.23■■□□□ 1.31
SQLE-201ENST00000265896 MAGI3Q5TCQ9 1506 aa23.23■■□□□ 1.31
SQLE-201ENST00000265896 KDM6BO15054 1643 aa23.2■■□□□ 1.3
SQLE-201ENST00000265896 SLC4A1APQ9BWU0 796 aaKnown RBP23.2■■□□□ 1.3
SQLE-201ENST00000265896 CDK11AQ9UQ88 783 aaPredicted RBP23.2■■□□□ 1.3
SQLE-201ENST00000265896 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.2■■□□□ 1.38e-9■■■□□ 18.5
SQLE-201ENST00000265896 CDK13Q14004 1512 aaKnown RBP23.19■■□□□ 1.3
SQLE-201ENST00000265896 LRRIQ1Q96JM4 1722 aa23.18■■□□□ 1.3
SQLE-201ENST00000265896 DENND4BO75064 1496 aaPredicted RBP23.16■■□□□ 1.3
SQLE-201ENST00000265896 PRKRIP1Q9H875 184 aaPredicted RBP23.16■■□□□ 1.3
SQLE-201ENST00000265896 KDM5BQ9UGL1 1544 aa23.15■■□□□ 1.3
SQLE-201ENST00000265896 GRIN2BQ13224 1484 aa23.15■■□□□ 1.3
SQLE-201ENST00000265896 CTTNBP2Q8WZ74 1663 aa23.14■■□□□ 1.29
SQLE-201ENST00000265896 ERICH6Q7L0X2 663 aa23.1■■□□□ 1.29
SQLE-201ENST00000265896 FBLN2P98095 1184 aa23.1■■□□□ 1.29
SQLE-201ENST00000265896 SALL2Q9Y467 1007 aaPredicted RBP23.09■■□□□ 1.29
SQLE-201ENST00000265896 PDS5BQ9NTI5 1447 aa23.08■■□□□ 1.29
SQLE-201ENST00000265896 KIF7Q2M1P5 1343 aa23.08■■□□□ 1.28
SQLE-201ENST00000265896 CUL7Q14999 1698 aa23.08■■□□□ 1.28
SQLE-201ENST00000265896 BCL11AQ9H165 835 aa23.07■■□□□ 1.28
SQLE-201ENST00000265896 CCDC7Q96M83 1385 aa23.07■■□□□ 1.28
SQLE-201ENST00000265896 SUPT6HQ7KZ85 1726 aaKnown RBP23.05■■□□□ 1.28
SQLE-201ENST00000265896 KDM2AQ9Y2K7 1162 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms