RNA–Protein interactions for RNA: ENST00000263780.8

CHMP2B-201, Transcript of charged multivesicular body protein 2B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP2B, Length 2,557 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2B-201ENST00000263780 ITGAEP38570 1179 aa17.46■□□□□ 0.39
CHMP2B-201ENST00000263780 ANP32CO43423 234 aa17.45■□□□□ 0.38
CHMP2B-201ENST00000263780 ARHGAP35Q9NRY4 1499 aa17.45■□□□□ 0.38
CHMP2B-201ENST00000263780 WDR97A6NE52 1622 aa17.4■□□□□ 0.38
CHMP2B-201ENST00000263780 TIAM1Q13009 1591 aa17.37■□□□□ 0.37
CHMP2B-201ENST00000263780 FANCIQ9NVI1 1328 aa17.35■□□□□ 0.37
CHMP2B-201ENST00000263780 CUX1P39880 1505 aa17.34■□□□□ 0.37
CHMP2B-201ENST00000263780 SIN3AQ96ST3 1273 aa17.33■□□□□ 0.36
CHMP2B-201ENST00000263780 LRRC9Q6ZRR7 1453 aa17.33■□□□□ 0.36
CHMP2B-201ENST00000263780 TRIM52Q96A61 297 aa17.32■□□□□ 0.36
CHMP2B-201ENST00000263780 MYT1LQ9UL68 1186 aa17.32■□□□□ 0.36
CHMP2B-201ENST00000263780 CDK11AQ9UQ88 783 aaPredicted RBP17.31■□□□□ 0.36
CHMP2B-201ENST00000263780 ERICH6BQ5W0A0 696 aa17.31■□□□□ 0.36
CHMP2B-201ENST00000263780 FHAD1B1AJZ9 1412 aa17.29■□□□□ 0.36
CHMP2B-201ENST00000263780 FAM50AQ14320 339 aaKnown RBP17.29■□□□□ 0.36
CHMP2B-201ENST00000263780 ERICH6Q7L0X2 663 aa17.29■□□□□ 0.36
CHMP2B-201ENST00000263780 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.28■□□□□ 0.36
CHMP2B-201ENST00000263780 PHLDB1Q86UU1 1377 aa17.27■□□□□ 0.35
CHMP2B-201ENST00000263780 TONSLQ96HA7 1378 aa17.23■□□□□ 0.35
CHMP2B-201ENST00000263780 MSH5O43196 834 aa17.23■□□□□ 0.35
CHMP2B-201ENST00000263780 HMGXB3Q12766 1538 aa17.23■□□□□ 0.35
CHMP2B-201ENST00000263780 IGF1RP08069 1367 aa17.22■□□□□ 0.35
CHMP2B-201ENST00000263780 NCAPD3P42695 1498 aa17.2■□□□□ 0.34
CHMP2B-201ENST00000263780 CFTRP13569 1480 aa17.19■□□□□ 0.34
CHMP2B-201ENST00000263780 CFAP43Q8NDM7 1665 aa17.19■□□□□ 0.34
CHMP2B-201ENST00000263780 CARMIL1Q5VZK9 1371 aa17.18■□□□□ 0.34
CHMP2B-201ENST00000263780 HIRIP3Q9BW71 556 aaPredicted RBP17.17■□□□□ 0.34
CHMP2B-201ENST00000263780 HNRNPUQ00839 825 aaKnown RBP eCLIP17.16■□□□□ 0.34
CHMP2B-201ENST00000263780 PPP4R2Q9NY27 417 aa17.15■□□□□ 0.34
CHMP2B-201ENST00000263780 UACAQ9BZF9 1416 aa17.11■□□□□ 0.33
CHMP2B-201ENST00000263780 FYCO1Q9BQS8 1478 aa17.11■□□□□ 0.33
CHMP2B-201ENST00000263780 AQRO60306 1485 aaKnown RBP eCLIP17.09■□□□□ 0.33
CHMP2B-201ENST00000263780 PCF11O94913 1555 aaKnown RBP17.08■□□□□ 0.33
CHMP2B-201ENST00000263780 CASKIN1Q8WXD9 1431 aa17.07■□□□□ 0.32
CHMP2B-201ENST00000263780 CCDC18Q5T9S5 1454 aa17.07■□□□□ 0.32
CHMP2B-201ENST00000263780 HFM1A2PYH4 1435 aa17.07■□□□□ 0.32
CHMP2B-201ENST00000263780 FGD5Q6ZNL6 1462 aa17.06■□□□□ 0.32
CHMP2B-201ENST00000263780 ATP1B4Q9UN42 357 aaPredicted RBP17.06■□□□□ 0.32
CHMP2B-201ENST00000263780 EFCAB5A4FU69 1503 aa17.05■□□□□ 0.32
CHMP2B-201ENST00000263780 FGD6Q6ZV73 1430 aa17.05■□□□□ 0.32
CHMP2B-201ENST00000263780 IRX6P78412 446 aaPredicted RBP17.02■□□□□ 0.31
CHMP2B-201ENST00000263780 PRDM2Q13029 1718 aa17.01■□□□□ 0.31
CHMP2B-201ENST00000263780 FMN1Q68DA7 1419 aa16.99■□□□□ 0.31
CHMP2B-201ENST00000263780 PTPN23Q9H3S7 1636 aa16.99■□□□□ 0.31
CHMP2B-201ENST00000263780 P3H3Q8IVL6 736 aa16.98■□□□□ 0.31
CHMP2B-201ENST00000263780 EIF4G2P78344 907 aaKnown RBP eCLIP16.97■□□□□ 0.31
CHMP2B-201ENST00000263780 FHOD3Q2V2M9 1422 aa16.97■□□□□ 0.31
CHMP2B-201ENST00000263780 WASHC2AQ641Q2 1341 aa16.97■□□□□ 0.31
CHMP2B-201ENST00000263780 HSPA5P11021 654 aaKnown RBP16.96■□□□□ 0.31
CHMP2B-201ENST00000263780 NCOA2Q15596 1464 aa16.96■□□□□ 0.31
CHMP2B-201ENST00000263780 CNTLNQ9NXG0 1405 aa16.96■□□□□ 0.31
CHMP2B-201ENST00000263780 DEKP35659 375 aaKnown RBP16.96■□□□□ 0.31
CHMP2B-201ENST00000263780 ZBED9Q6R2W3 1325 aa16.96■□□□□ 0.31
CHMP2B-201ENST00000263780 MTUS2Q5JR59 1369 aa16.95■□□□□ 0.3
CHMP2B-201ENST00000263780 NAIPQ13075 1403 aa16.95■□□□□ 0.3
CHMP2B-201ENST00000263780 KDM5BQ9UGL1 1544 aa16.94■□□□□ 0.3
CHMP2B-201ENST00000263780 NOP58Q9Y2X3 529 aaKnown RBP16.93■□□□□ 0.3
CHMP2B-201ENST00000263780 CADPSQ9ULU8 1353 aa16.92■□□□□ 0.3
CHMP2B-201ENST00000263780 PTPRKQ15262 1439 aa16.91■□□□□ 0.3
CHMP2B-201ENST00000263780 PRKRIP1Q9H875 184 aaPredicted RBP16.9■□□□□ 0.3
CHMP2B-201ENST00000263780 MYOM3Q5VTT5 1437 aa16.9■□□□□ 0.3
CHMP2B-201ENST00000263780 B4GALNT3Q6L9W6 998 aa16.88■□□□□ 0.29
CHMP2B-201ENST00000263780 MRS2Q9HD23 443 aa16.88■□□□□ 0.29
CHMP2B-201ENST00000263780 FAM9BQ8IZU0 186 aa16.86■□□□□ 0.29
CHMP2B-201ENST00000263780 CCDC7Q96M83 1385 aa16.85■□□□□ 0.29
CHMP2B-201ENST00000263780 NCOA1Q15788 1441 aa16.85■□□□□ 0.29
CHMP2B-201ENST00000263780 SNAPC4Q5SXM2 1469 aa16.85■□□□□ 0.29
CHMP2B-201ENST00000263780 CC2D2AQ9P2K1 1620 aa16.85■□□□□ 0.29
CHMP2B-201ENST00000263780 CUL7Q14999 1698 aa16.84■□□□□ 0.29
CHMP2B-201ENST00000263780 ANP32AP39687 249 aaKnown RBP16.84■□□□□ 0.29
CHMP2B-201ENST00000263780 AKNAQ7Z591 1439 aa16.83■□□□□ 0.28
CHMP2B-201ENST00000263780 THOC2Q8NI27 1593 aaKnown RBP16.83■□□□□ 0.28
CHMP2B-201ENST00000263780 ABCA10Q8WWZ4 1543 aa16.82■□□□□ 0.28
CHMP2B-201ENST00000263780 CCDC184Q52MB2 194 aa16.82■□□□□ 0.28
CHMP2B-201ENST00000263780 SUPT6HQ7KZ85 1726 aaKnown RBP16.81■□□□□ 0.28
CHMP2B-201ENST00000263780 SMG6Q86US8 1419 aaKnown RBP16.81■□□□□ 0.28
CHMP2B-201ENST00000263780 HECW1Q76N89 1606 aa16.81■□□□□ 0.28
CHMP2B-201ENST00000263780 CTTNBP2Q8WZ74 1663 aa16.81■□□□□ 0.28
CHMP2B-201ENST00000263780 EHBP1L1Q8N3D4 1523 aa16.81■□□□□ 0.28
CHMP2B-201ENST00000263780 RTL5Q5HYW3 569 aaPredicted RBP16.79■□□□□ 0.28
CHMP2B-201ENST00000263780 IPO9Q96P70 1041 aaKnown RBP16.79■□□□□ 0.28
CHMP2B-201ENST00000263780 L3MBTL2Q969R5 705 aa16.77■□□□□ 0.27
CHMP2B-201ENST00000263780 TCOF1Q13428 1488 aaKnown RBP16.77■□□□□ 0.27
CHMP2B-201ENST00000263780 GCC2Q8IWJ2 1684 aa16.76■□□□□ 0.27
CHMP2B-201ENST00000263780 GRIN2BQ13224 1484 aa16.76■□□□□ 0.27
CHMP2B-201ENST00000263780 CCDC136Q96JN2 1154 aa16.76■□□□□ 0.27
CHMP2B-201ENST00000263780 MPHOSPH9Q99550 1183 aa16.76■□□□□ 0.27
CHMP2B-201ENST00000263780 ZBTB47Q9UFB7 747 aaPredicted RBP16.76■□□□□ 0.27
CHMP2B-201ENST00000263780 RNF123Q5XPI4 1314 aa16.76■□□□□ 0.27
CHMP2B-201ENST00000263780 NBR1Q14596 966 aa16.76■□□□□ 0.27
CHMP2B-201ENST00000263780 NUDCQ9Y266 331 aa16.75■□□□□ 0.27
CHMP2B-201ENST00000263780 UGGT2Q9NYU1 1516 aa16.75■□□□□ 0.27
CHMP2B-201ENST00000263780 RRP7BPQ9NSQ0 103 aa16.75■□□□□ 0.27
CHMP2B-201ENST00000263780 DNMBPQ6XZF7 1577 aa16.74■□□□□ 0.27
CHMP2B-201ENST00000263780 ARHGEF11O15085 1522 aa16.73■□□□□ 0.27
CHMP2B-201ENST00000263780 C11orf95C9JLR9 678 aaPredicted RBP16.73■□□□□ 0.27
CHMP2B-201ENST00000263780 PAK3O75914 559 aaPredicted RBP16.73■□□□□ 0.27
CHMP2B-201ENST00000263780 SAMD9Q5K651 1589 aa16.73■□□□□ 0.27
CHMP2B-201ENST00000263780 FANCD2Q9BXW9 1451 aa16.73■□□□□ 0.27
CHMP2B-201ENST00000263780 ABCA5Q8WWZ7 1642 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms