RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 ADAMTS12P58397 1594 aa15.82■□□□□ 0.12
SNRNP40-201ENST00000263694 FHAD1B1AJZ9 1412 aa15.8■□□□□ 0.12
SNRNP40-201ENST00000263694 FBLN2P98095 1184 aa15.79■□□□□ 0.12
SNRNP40-201ENST00000263694 MAGI1Q96QZ7 1491 aaPredicted RBP15.78■□□□□ 0.12
SNRNP40-201ENST00000263694 CHMP7Q8WUX9 453 aaPredicted RBP15.75■□□□□ 0.11
SNRNP40-201ENST00000263694 SYNJ2O15056 1496 aa15.74■□□□□ 0.11
SNRNP40-201ENST00000263694 RANGAP1P46060 587 aaPredicted RBP15.74■□□□□ 0.11
SNRNP40-201ENST00000263694 TNIKQ9UKE5 1360 aa15.73■□□□□ 0.11
SNRNP40-201ENST00000263694 GRIN2AQ12879 1464 aa15.72■□□□□ 0.11
SNRNP40-201ENST00000263694 CHD1O14646 1710 aa15.71■□□□□ 0.11
SNRNP40-201ENST00000263694 CTTNBP2Q8WZ74 1663 aa15.66■□□□□ 0.1
SNRNP40-201ENST00000263694 CEP170Q5SW79 1584 aa15.65■□□□□ 0.1
SNRNP40-201ENST00000263694 CEP162Q5TB80 1403 aa15.64■□□□□ 0.09
SNRNP40-201ENST00000263694 NUP160Q12769 1436 aa15.6■□□□□ 0.09
SNRNP40-201ENST00000263694 CLIP1P30622 1438 aa15.59■□□□□ 0.09
SNRNP40-201ENST00000263694 KIAA0586Q9BVV6 1533 aa15.58■□□□□ 0.08
SNRNP40-201ENST00000263694 IQGAP2Q13576 1575 aa15.58■□□□□ 0.08
SNRNP40-201ENST00000263694 P3H3Q8IVL6 736 aa15.57■□□□□ 0.08
SNRNP40-201ENST00000263694 ARHGAP35Q9NRY4 1499 aa15.53■□□□□ 0.08
SNRNP40-201ENST00000263694 JPH4Q96JJ6 628 aa15.51■□□□□ 0.07
SNRNP40-201ENST00000263694 OSCARQ8IYS5 282 aa15.5■□□□□ 0.07
SNRNP40-201ENST00000263694 ARAP1Q96P48 1450 aa15.49■□□□□ 0.07
SNRNP40-201ENST00000263694 CLASP1Q7Z460 1538 aa15.49■□□□□ 0.07
SNRNP40-201ENST00000263694 UGGT2Q9NYU1 1516 aa15.49■□□□□ 0.07
SNRNP40-201ENST00000263694 FHOD3Q2V2M9 1422 aa15.48■□□□□ 0.07
SNRNP40-201ENST00000263694 SAMD9Q5K651 1589 aa15.47■□□□□ 0.07
SNRNP40-201ENST00000263694 DISP1Q96F81 1524 aa15.46■□□□□ 0.07
SNRNP40-201ENST00000263694 TTBK1Q5TCY1 1321 aaPredicted RBP15.45■□□□□ 0.06
SNRNP40-201ENST00000263694 EFCAB5A4FU69 1503 aa15.44■□□□□ 0.06
SNRNP40-201ENST00000263694 PRG4Q92954 1404 aaPredicted RBP15.44■□□□□ 0.06
SNRNP40-201ENST00000263694 SHROOM2Q13796 1616 aa15.43■□□□□ 0.06
SNRNP40-201ENST00000263694 ERCC6L2Q5T890 1561 aa15.43■□□□□ 0.06
SNRNP40-201ENST00000263694 KIAA0556O60303 1618 aa15.42■□□□□ 0.06
SNRNP40-201ENST00000263694 CARMIL2Q6F5E8 1435 aa15.38■□□□□ 0.05
SNRNP40-201ENST00000263694 VPS8Q8N3P4 1428 aa15.38■□□□□ 0.05
SNRNP40-201ENST00000263694 ATP1B4Q9UN42 357 aaPredicted RBP15.35■□□□□ 0.05
SNRNP40-201ENST00000263694 PPARGC1BQ86YN6 1023 aaKnown RBP15.34■□□□□ 0.05
SNRNP40-201ENST00000263694 DMRT2Q9Y5R5 561 aa15.34■□□□□ 0.05
SNRNP40-201ENST00000263694 PCF11O94913 1555 aaKnown RBP15.32■□□□□ 0.04
SNRNP40-201ENST00000263694 FMN1Q68DA7 1419 aa15.32■□□□□ 0.04
SNRNP40-201ENST00000263694 PTPRGP23470 1445 aa15.3■□□□□ 0.04
SNRNP40-201ENST00000263694 ARID3CA6NKF2 412 aa15.28■□□□□ 0.04
SNRNP40-201ENST00000263694 PLB1Q6P1J6 1458 aa15.28■□□□□ 0.04
SNRNP40-201ENST00000263694 CASKIN1Q8WXD9 1431 aa15.28■□□□□ 0.04
SNRNP40-201ENST00000263694 MAPK8IP2Q13387 824 aaPredicted RBP15.26■□□□□ 0.03
SNRNP40-201ENST00000263694 LRRIQ1Q96JM4 1722 aa15.26■□□□□ 0.03
SNRNP40-201ENST00000263694 FYCO1Q9BQS8 1478 aa15.25■□□□□ 0.03
SNRNP40-201ENST00000263694 RAPGEF6Q8TEU7 1601 aa15.24■□□□□ 0.03
SNRNP40-201ENST00000263694 ARHGEF11O15085 1522 aa15.24■□□□□ 0.03
SNRNP40-201ENST00000263694 SCAF1Q9H7N4 1312 aaKnown RBP15.24■□□□□ 0.03
SNRNP40-201ENST00000263694 APLP2Q06481 763 aa15.24■□□□□ 0.03
SNRNP40-201ENST00000263694 ABCA8O94911 1581 aa15.22■□□□□ 0.03
SNRNP40-201ENST00000263694 KANK4Q5T7N3 995 aaPredicted RBP15.22■□□□□ 0.03
SNRNP40-201ENST00000263694 RIMBP3CA6NJZ7 1639 aa15.21■□□□□ 0.02
SNRNP40-201ENST00000263694 RIMBP3BA6NNM3 1639 aa15.21■□□□□ 0.02
SNRNP40-201ENST00000263694 HECW1Q76N89 1606 aa15.21■□□□□ 0.02
SNRNP40-201ENST00000263694 RIMBP3Q9UFD9 1639 aa15.21■□□□□ 0.02
SNRNP40-201ENST00000263694 NUP153P49790 1475 aaKnown RBP15.21■□□□□ 0.02
SNRNP40-201ENST00000263694 CDK13Q14004 1512 aaKnown RBP15.19■□□□□ 0.02
SNRNP40-201ENST00000263694 UACAQ9BZF9 1416 aa15.19■□□□□ 0.02
SNRNP40-201ENST00000263694 EPRSP07814 1512 aaKnown RBP15.18■□□□□ 0.02
SNRNP40-201ENST00000263694 TIAM1Q13009 1591 aa15.18■□□□□ 0.02
SNRNP40-201ENST00000263694 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.17■□□□□ 0.02
SNRNP40-201ENST00000263694 HNRNPUL2Q1KMD3 747 aaKnown RBP15.17■□□□□ 0.02
SNRNP40-201ENST00000263694 CFAP43Q8NDM7 1665 aa15.16■□□□□ 0.02
SNRNP40-201ENST00000263694 CYB5RLQ6IPT4 315 aa15.15■□□□□ 0.02
SNRNP40-201ENST00000263694 ABCC2Q92887 1545 aa15.15■□□□□ 0.02
SNRNP40-201ENST00000263694 ATP10BO94823 1461 aa15.14■□□□□ 0.01
SNRNP40-201ENST00000263694 ADCY10Q96PN6 1610 aa15.13■□□□□ 0.01
SNRNP40-201ENST00000263694 MAP3K1Q13233 1512 aa15.13■□□□□ 0.01
SNRNP40-201ENST00000263694 CCDC18Q5T9S5 1454 aa15.12■□□□□ 0.01
SNRNP40-201ENST00000263694 MAGI3Q5TCQ9 1506 aa15.12■□□□□ 0.01
SNRNP40-201ENST00000263694 LRRC9Q6ZRR7 1453 aa15.11■□□□□ 0.01
SNRNP40-201ENST00000263694 UHRF1BP1LA0JNW5 1464 aa15.11■□□□□ 0.01
SNRNP40-201ENST00000263694 MTUS2Q5JR59 1369 aa15.08■□□□□ 0
SNRNP40-201ENST00000263694 ZCCHC11Q5TAX3 1644 aaKnown RBP15.07■□□□□ 0
SNRNP40-201ENST00000263694 KDM5BQ9UGL1 1544 aa15.06■□□□□ 0
SNRNP40-201ENST00000263694 PLEKHD1A6NEE1 506 aa15.04■□□□□ -0
SNRNP40-201ENST00000263694 CDK11AQ9UQ88 783 aaPredicted RBP15.04■□□□□ -0
SNRNP40-201ENST00000263694 DNAJC5Q9H3Z4 198 aa15.03■□□□□ -0
SNRNP40-201ENST00000263694 EHBP1L1Q8N3D4 1523 aa15.03■□□□□ -0
SNRNP40-201ENST00000263694 NPM1P06748 294 aaKnown RBP eCLIP15.02□□□□□ -0.01
SNRNP40-201ENST00000263694 CACNB1Q02641 598 aaPredicted RBP15.01□□□□□ -0.01
SNRNP40-201ENST00000263694 TROQ12816 1431 aaPredicted RBP15.01□□□□□ -0.01
SNRNP40-201ENST00000263694 KCNH8Q96L42 1107 aa15□□□□□ -0.01
SNRNP40-201ENST00000263694 PHLDB1Q86UU1 1377 aa15□□□□□ -0.01
SNRNP40-201ENST00000263694 KIF14Q15058 1648 aa15□□□□□ -0.01
SNRNP40-201ENST00000263694 NCOA2Q15596 1464 aa14.99□□□□□ -0.01
SNRNP40-201ENST00000263694 SUPT6HQ7KZ85 1726 aaKnown RBP14.99□□□□□ -0.01
SNRNP40-201ENST00000263694 ASXL2Q76L83 1435 aa14.96□□□□□ -0.01
SNRNP40-201ENST00000263694 TRIM26Q12899 539 aaPredicted RBP14.95□□□□□ -0.02
SNRNP40-201ENST00000263694 PCGF6Q9BYE7 350 aa14.94□□□□□ -0.02
SNRNP40-201ENST00000263694 WDR7Q9Y4E6 1490 aa14.93□□□□□ -0.02
SNRNP40-201ENST00000263694 ABCC10Q5T3U5 1492 aa14.91□□□□□ -0.02
SNRNP40-201ENST00000263694 CCNB3Q8WWL7 1395 aa14.91□□□□□ -0.02
SNRNP40-201ENST00000263694 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.9□□□□□ -0.021e-7■■■■□ 24.6
SNRNP40-201ENST00000263694 MYOM3Q5VTT5 1437 aa14.9□□□□□ -0.02
SNRNP40-201ENST00000263694 TTC37Q6PGP7 1564 aa14.9□□□□□ -0.02
SNRNP40-201ENST00000263694 CDC42BPAQ5VT25 1732 aa14.88□□□□□ -0.03
SNRNP40-201ENST00000263694 FAM50AQ14320 339 aaKnown RBP14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms