RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 DNMBPQ6XZF7 1577 aa22.2■■□□□ 1.14
DDX56-201ENST00000258772 ABCA10Q8WWZ4 1543 aa22.17■■□□□ 1.14
DDX56-201ENST00000258772 PHLDB1Q86UU1 1377 aa22.17■■□□□ 1.14
DDX56-201ENST00000258772 RAD54L2Q9Y4B4 1467 aa22.17■■□□□ 1.14
DDX56-201ENST00000258772 CFAP43Q8NDM7 1665 aa22.15■■□□□ 1.14
DDX56-201ENST00000258772 TOPBP1Q92547 1522 aa22.14■■□□□ 1.14
DDX56-201ENST00000258772 P3H3Q8IVL6 736 aa22.14■■□□□ 1.14
DDX56-201ENST00000258772 POLA1P09884 1462 aaPredicted RBP22.14■■□□□ 1.14
DDX56-201ENST00000258772 SETD5Q9C0A6 1442 aa22.14■■□□□ 1.13
DDX56-201ENST00000258772 PCF11O94913 1555 aaKnown RBP22.13■■□□□ 1.13
DDX56-201ENST00000258772 MAPKBP1O60336 1514 aa22.12■■□□□ 1.13
DDX56-201ENST00000258772 NESP48681 1621 aa22.09■■□□□ 1.13
DDX56-201ENST00000258772 FHOD3Q2V2M9 1422 aa22.08■■□□□ 1.13
DDX56-201ENST00000258772 FAM50AQ14320 339 aaKnown RBP22.08■■□□□ 1.12
DDX56-201ENST00000258772 EFCAB5A4FU69 1503 aa22.08■■□□□ 1.12
DDX56-201ENST00000258772 CUL7Q14999 1698 aa22.07■■□□□ 1.12
DDX56-201ENST00000258772 ATP1B4Q9UN42 357 aaPredicted RBP22.07■■□□□ 1.12
DDX56-201ENST00000258772 FYCO1Q9BQS8 1478 aa22.06■■□□□ 1.12
DDX56-201ENST00000258772 CASKIN1Q8WXD9 1431 aa22.04■■□□□ 1.12
DDX56-201ENST00000258772 AQRO60306 1485 aaKnown RBP eCLIP22.03■■□□□ 1.122e-7■■■■□ 22.4
DDX56-201ENST00000258772 CTTNBP2Q8WZ74 1663 aa22.03■■□□□ 1.12
DDX56-201ENST00000258772 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.98■■□□□ 1.11
DDX56-201ENST00000258772 WDR97A6NE52 1622 aa21.96■■□□□ 1.11
DDX56-201ENST00000258772 LAMC3Q9Y6N6 1575 aa21.95■■□□□ 1.1
DDX56-201ENST00000258772 URB2Q14146 1524 aaKnown RBP21.95■■□□□ 1.1
DDX56-201ENST00000258772 FMN1Q68DA7 1419 aa21.95■■□□□ 1.1
DDX56-201ENST00000258772 SIN3AQ96ST3 1273 aa21.95■■□□□ 1.1
DDX56-201ENST00000258772 TIMELESSQ9UNS1 1208 aa21.91■■□□□ 1.1
DDX56-201ENST00000258772 SNAPC4Q5SXM2 1469 aa21.9■■□□□ 1.1
DDX56-201ENST00000258772 TDRD9Q8NDG6 1382 aaKnown RBP21.88■■□□□ 1.09
DDX56-201ENST00000258772 ABCA5Q8WWZ7 1642 aa21.88■■□□□ 1.09
DDX56-201ENST00000258772 FGD6Q6ZV73 1430 aa21.87■■□□□ 1.09
DDX56-201ENST00000258772 SAMD9Q5K651 1589 aa21.85■■□□□ 1.09
DDX56-201ENST00000258772 GAPVD1Q14C86 1478 aa21.85■■□□□ 1.09
DDX56-201ENST00000258772 MTUS2Q5JR59 1369 aa21.84■■□□□ 1.09
DDX56-201ENST00000258772 PDS5BQ9NTI5 1447 aa21.81■■□□□ 1.08
DDX56-201ENST00000258772 LRRIQ1Q96JM4 1722 aa21.81■■□□□ 1.08
DDX56-201ENST00000258772 PPP1R15AO75807 674 aaPredicted RBP21.8■■□□□ 1.08
DDX56-201ENST00000258772 GRIN2BQ13224 1484 aa21.78■■□□□ 1.08
DDX56-201ENST00000258772 DDX10Q13206 875 aaKnown RBP21.77■■□□□ 1.07
DDX56-201ENST00000258772 PTPRKQ15262 1439 aa21.76■■□□□ 1.07
DDX56-201ENST00000258772 KCNH8Q96L42 1107 aa21.76■■□□□ 1.07
DDX56-201ENST00000258772 HFM1A2PYH4 1435 aa21.75■■□□□ 1.07
DDX56-201ENST00000258772 SUPT16HQ9Y5B9 1047 aaKnown RBP21.75■■□□□ 1.07
DDX56-201ENST00000258772 NCOA2Q15596 1464 aa21.75■■□□□ 1.07
DDX56-201ENST00000258772 CCDC18Q5T9S5 1454 aa21.75■■□□□ 1.07
DDX56-201ENST00000258772 THOC2Q8NI27 1593 aaKnown RBP21.75■■□□□ 1.07
DDX56-201ENST00000258772 MYOM3Q5VTT5 1437 aa21.74■■□□□ 1.07
DDX56-201ENST00000258772 KIF21AQ7Z4S6 1674 aa21.72■■□□□ 1.07
DDX56-201ENST00000258772 UACAQ9BZF9 1416 aa21.72■■□□□ 1.07
DDX56-201ENST00000258772 SUPT6HQ7KZ85 1726 aaKnown RBP21.71■■□□□ 1.07
DDX56-201ENST00000258772 PTPN23Q9H3S7 1636 aa21.71■■□□□ 1.07
DDX56-201ENST00000258772 DNAJC5BQ9UF47 199 aa21.71■■□□□ 1.07
DDX56-201ENST00000258772 TARBP1Q13395 1621 aaKnown RBP21.69■■□□□ 1.06
DDX56-201ENST00000258772 EHBP1L1Q8N3D4 1523 aa21.69■■□□□ 1.06
DDX56-201ENST00000258772 NAIPQ13075 1403 aa21.68■■□□□ 1.06
DDX56-201ENST00000258772 TONSLQ96HA7 1378 aa21.67■■□□□ 1.06
DDX56-201ENST00000258772 HIRIP3Q9BW71 556 aaPredicted RBP21.66■■□□□ 1.06
DDX56-201ENST00000258772 UGGT2Q9NYU1 1516 aa21.65■■□□□ 1.06
DDX56-201ENST00000258772 ARHGEF11O15085 1522 aa21.64■■□□□ 1.05
DDX56-201ENST00000258772 MAGI3Q5TCQ9 1506 aa21.62■■□□□ 1.05
DDX56-201ENST00000258772 PBRM1Q86U86 1689 aa21.6■■□□□ 1.05
DDX56-201ENST00000258772 HECW1Q76N89 1606 aa21.57■■□□□ 1.04
DDX56-201ENST00000258772 CCER2I3L3R5 266 aa21.57■■□□□ 1.04
DDX56-201ENST00000258772 TCOF1Q13428 1488 aaKnown RBP21.56■■□□□ 1.04
DDX56-201ENST00000258772 IQGAP2Q13576 1575 aa21.56■■□□□ 1.04
DDX56-201ENST00000258772 ANP32CO43423 234 aa21.55■■□□□ 1.04
DDX56-201ENST00000258772 EPRSP07814 1512 aaKnown RBP21.53■■□□□ 1.04
DDX56-201ENST00000258772 RRP7BPQ9NSQ0 103 aa21.53■■□□□ 1.04
DDX56-201ENST00000258772 ADAMTS12P58397 1594 aa21.52■■□□□ 1.04
DDX56-201ENST00000258772 CHIC2Q9UKJ5 165 aa21.51■■□□□ 1.03
DDX56-201ENST00000258772 KDM5BQ9UGL1 1544 aa21.51■■□□□ 1.03
DDX56-201ENST00000258772 GCC2Q8IWJ2 1684 aa21.51■■□□□ 1.03
DDX56-201ENST00000258772 AKNAQ7Z591 1439 aa21.48■■□□□ 1.03
DDX56-201ENST00000258772 MIA2Q96PC5 1412 aa21.48■■□□□ 1.03
DDX56-201ENST00000258772 CDK13Q14004 1512 aaKnown RBP21.47■■□□□ 1.03
DDX56-201ENST00000258772 MYT1Q01538 1121 aa21.46■■□□□ 1.03
DDX56-201ENST00000258772 MRC2Q9UBG0 1479 aa21.46■■□□□ 1.03
DDX56-201ENST00000258772 WDR62O43379 1518 aa21.46■■□□□ 1.03
DDX56-201ENST00000258772 DENND4BO75064 1496 aaPredicted RBP21.45■■□□□ 1.02
DDX56-201ENST00000258772 TRIM52Q96A61 297 aa21.44■■□□□ 1.02
DDX56-201ENST00000258772 KDM6BO15054 1643 aa21.42■■□□□ 1.02
DDX56-201ENST00000258772 ARID3CA6NKF2 412 aa21.39■■□□□ 1.02
DDX56-201ENST00000258772 MPHOSPH9Q99550 1183 aa21.39■■□□□ 1.01
DDX56-201ENST00000258772 FKBP8Q14318 412 aa21.38■■□□□ 1.01
DDX56-201ENST00000258772 TSHZ2Q9NRE2 1034 aa21.37■■□□□ 1.01
DDX56-201ENST00000258772 ZNF608Q9ULD9 1512 aaPredicted RBP21.36■■□□□ 1.01
DDX56-201ENST00000258772 IFT140Q96RY7 1462 aa21.36■■□□□ 1.01
DDX56-201ENST00000258772 KIAA0586Q9BVV6 1533 aa21.35■■□□□ 1.01
DDX56-201ENST00000258772 HSPA5P11021 654 aaKnown RBP21.34■■□□□ 1.01
DDX56-201ENST00000258772 SLC24A1O60721 1099 aa21.33■■□□□ 1.01
DDX56-201ENST00000258772 DISP1Q96F81 1524 aa21.33■■□□□ 1
DDX56-201ENST00000258772 BCANQ96GW7 911 aa21.33■■□□□ 1
DDX56-201ENST00000258772 KIAA0556O60303 1618 aa21.32■■□□□ 1
DDX56-201ENST00000258772 ROCK1Q13464 1354 aa21.32■■□□□ 1
DDX56-201ENST00000258772 DAPK1P53355 1430 aa21.31■■□□□ 1
DDX56-201ENST00000258772 WASHC2AQ641Q2 1341 aa21.31■■□□□ 1
DDX56-201ENST00000258772 EIF4G2P78344 907 aaKnown RBP eCLIP21.3■■□□□ 1
DDX56-201ENST00000258772 L3MBTL2Q969R5 705 aa21.3■■□□□ 1
DDX56-201ENST00000258772 NUP153P49790 1475 aaKnown RBP21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms