RNA–Protein interactions for RNA: ENST00000254231.4

LIN28A-201, Transcript of lin-28 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIN28A, Length 3,458 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28A-201ENST00000254231 JPH4Q96JJ6 628 aa17.44■□□□□ 0.38
LIN28A-201ENST00000254231 ARAP1Q96P48 1450 aa17.42■□□□□ 0.38
LIN28A-201ENST00000254231 SENP3Q9H4L4 574 aaPredicted RBP17.41■□□□□ 0.38
LIN28A-201ENST00000254231 BIVM-ERCC5R4GMW8 1640 aa17.4■□□□□ 0.38
LIN28A-201ENST00000254231 VPS8Q8N3P4 1428 aa17.39■□□□□ 0.37
LIN28A-201ENST00000254231 NEUROD1Q13562 356 aa17.38■□□□□ 0.37
LIN28A-201ENST00000254231 CNGB1Q14028 1251 aaPredicted RBP17.37■□□□□ 0.37
LIN28A-201ENST00000254231 MTUS2Q5JR59 1369 aa17.37■□□□□ 0.37
LIN28A-201ENST00000254231 SNAPC4Q5SXM2 1469 aa17.37■□□□□ 0.37
LIN28A-201ENST00000254231 ABCA10Q8WWZ4 1543 aa17.36■□□□□ 0.37
LIN28A-201ENST00000254231 KIF21BO75037 1637 aa17.34■□□□□ 0.37
LIN28A-201ENST00000254231 ARHGAP35Q9NRY4 1499 aa17.34■□□□□ 0.37
LIN28A-201ENST00000254231 RRP7BPQ9NSQ0 103 aa17.33■□□□□ 0.36
LIN28A-201ENST00000254231 PLPPR3Q6T4P5 718 aa17.32■□□□□ 0.36
LIN28A-201ENST00000254231 TRIM52Q96A61 297 aa17.3■□□□□ 0.36
LIN28A-201ENST00000254231 GRIN2BQ13224 1484 aa17.29■□□□□ 0.36
LIN28A-201ENST00000254231 IFT140Q96RY7 1462 aa17.26■□□□□ 0.35
LIN28A-201ENST00000254231 CYB5RLQ6IPT4 315 aa17.24■□□□□ 0.35
LIN28A-201ENST00000254231 FHAD1B1AJZ9 1412 aa17.23■□□□□ 0.35
LIN28A-201ENST00000254231 ZNF644Q9H582 1327 aaPredicted RBP17.2■□□□□ 0.34
LIN28A-201ENST00000254231 HIRIP3Q9BW71 556 aaPredicted RBP17.19■□□□□ 0.34
LIN28A-201ENST00000254231 PLEKHD1A6NEE1 506 aa17.19■□□□□ 0.34
LIN28A-201ENST00000254231 CDK11AQ9UQ88 783 aaPredicted RBP17.16■□□□□ 0.34
LIN28A-201ENST00000254231 ERICH3Q5RHP9 1530 aa17.14■□□□□ 0.34
LIN28A-201ENST00000254231 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.14■□□□□ 0.33
LIN28A-201ENST00000254231 ZNF326Q5BKZ1 582 aaKnown RBP17.14■□□□□ 0.33
LIN28A-201ENST00000254231 PRDM2Q13029 1718 aa17.13■□□□□ 0.33
LIN28A-201ENST00000254231 FOXD1Q16676 465 aa17.13■□□□□ 0.33
LIN28A-201ENST00000254231 CFDP1Q9UEE9 299 aaPredicted RBP17.13■□□□□ 0.33
LIN28A-201ENST00000254231 OSCARQ8IYS5 282 aa17.12■□□□□ 0.33
LIN28A-201ENST00000254231 PHLDB1Q86UU1 1377 aa17.11■□□□□ 0.33
LIN28A-201ENST00000254231 SIN3AQ96ST3 1273 aa17.11■□□□□ 0.33
LIN28A-201ENST00000254231 POLR3GLQ9BT43 218 aa17.11■□□□□ 0.33
LIN28A-201ENST00000254231 PRG4Q92954 1404 aaPredicted RBP17.1■□□□□ 0.33
LIN28A-201ENST00000254231 TARBP1Q13395 1621 aaKnown RBP17.1■□□□□ 0.33
LIN28A-201ENST00000254231 EIF4G3O43432 1585 aaKnown RBP17.09■□□□□ 0.33
LIN28A-201ENST00000254231 WDR62O43379 1518 aa17.08■□□□□ 0.33
LIN28A-201ENST00000254231 CCNB3Q8WWL7 1395 aa17.08■□□□□ 0.33
LIN28A-201ENST00000254231 NPM1P06748 294 aaKnown RBP eCLIP17.08■□□□□ 0.32
LIN28A-201ENST00000254231 GRIN2AQ12879 1464 aa17.08■□□□□ 0.32
LIN28A-201ENST00000254231 PLB1Q6P1J6 1458 aa17.07■□□□□ 0.32
LIN28A-201ENST00000254231 PTPRGP23470 1445 aa17.07■□□□□ 0.32
LIN28A-201ENST00000254231 FMN1Q68DA7 1419 aa17.06■□□□□ 0.32
LIN28A-201ENST00000254231 HNRNPMP52272 730 aaKnown RBP eCLIP17.06■□□□□ 0.32
LIN28A-201ENST00000254231 CDK13Q14004 1512 aaKnown RBP17.05■□□□□ 0.32
LIN28A-201ENST00000254231 YTHDC1Q96MU7 727 aaKnown RBP17.04■□□□□ 0.32
LIN28A-201ENST00000254231 CARMIL2Q6F5E8 1435 aa17.03■□□□□ 0.32
LIN28A-201ENST00000254231 ZEB1P37275 1124 aaPredicted RBP17.03■□□□□ 0.32
LIN28A-201ENST00000254231 SYNJ2O15056 1496 aa17.01■□□□□ 0.31
LIN28A-201ENST00000254231 THOC2Q8NI27 1593 aaKnown RBP17■□□□□ 0.31
LIN28A-201ENST00000254231 ABCA5Q8WWZ7 1642 aa16.99■□□□□ 0.31
LIN28A-201ENST00000254231 TRHP20396 242 aaPredicted RBP16.97■□□□□ 0.31
LIN28A-201ENST00000254231 PCF11O94913 1555 aaKnown RBP16.96■□□□□ 0.31
LIN28A-201ENST00000254231 KIAA0586Q9BVV6 1533 aa16.95■□□□□ 0.3
LIN28A-201ENST00000254231 IQGAP2Q13576 1575 aa16.95■□□□□ 0.3
LIN28A-201ENST00000254231 LRRC9Q6ZRR7 1453 aa16.94■□□□□ 0.3
LIN28A-201ENST00000254231 CUL7Q14999 1698 aa16.93■□□□□ 0.3
LIN28A-201ENST00000254231 TSPY4P0CV99 314 aa16.93■□□□□ 0.3
LIN28A-201ENST00000254231 TSPY10P0CW01 314 aa16.93■□□□□ 0.3
LIN28A-201ENST00000254231 PBRM1Q86U86 1689 aa16.92■□□□□ 0.3
LIN28A-201ENST00000254231 ADAMTS12P58397 1594 aa16.92■□□□□ 0.3
LIN28A-201ENST00000254231 MAGI1Q96QZ7 1491 aaPredicted RBP16.91■□□□□ 0.3
LIN28A-201ENST00000254231 CASKIN1Q8WXD9 1431 aa16.9■□□□□ 0.3
LIN28A-201ENST00000254231 RAB3GAP2Q9H2M9 1393 aa16.9■□□□□ 0.3
LIN28A-201ENST00000254231 MLECQ14165 292 aa16.88■□□□□ 0.29
LIN28A-201ENST00000254231 KDM2AQ9Y2K7 1162 aa16.87■□□□□ 0.29
LIN28A-201ENST00000254231 SLC4A1APQ9BWU0 796 aaKnown RBP16.86■□□□□ 0.29
LIN28A-201ENST00000254231 CEP170Q5SW79 1584 aa16.86■□□□□ 0.29
LIN28A-201ENST00000254231 RGL3Q3MIN7 710 aa16.85■□□□□ 0.29
LIN28A-201ENST00000254231 NCOA2Q15596 1464 aa16.84■□□□□ 0.29
LIN28A-201ENST00000254231 AFAP1Q8N556 730 aa16.84■□□□□ 0.29
LIN28A-201ENST00000254231 SENP3-EIF4A1A0A087X0R7 540 aa16.83■□□□□ 0.29
LIN28A-201ENST00000254231 CHGAP10645 457 aaKnown RBP16.83■□□□□ 0.28
LIN28A-201ENST00000254231 ERCC6L2Q5T890 1561 aa16.82■□□□□ 0.28
LIN28A-201ENST00000254231 DISP1Q96F81 1524 aa16.82■□□□□ 0.28
LIN28A-201ENST00000254231 TIAM1Q13009 1591 aa16.82■□□□□ 0.28
LIN28A-201ENST00000254231 EPRSP07814 1512 aaKnown RBP16.82■□□□□ 0.28
LIN28A-201ENST00000254231 WDR97A6NE52 1622 aa16.81■□□□□ 0.28
LIN28A-201ENST00000254231 FYCO1Q9BQS8 1478 aa16.78■□□□□ 0.28
LIN28A-201ENST00000254231 FGD6Q6ZV73 1430 aa16.78■□□□□ 0.28
LIN28A-201ENST00000254231 DIEXFQ68CQ4 756 aaKnown RBP16.78■□□□□ 0.28
LIN28A-201ENST00000254231 CTTNBP2Q8WZ74 1663 aa16.77■□□□□ 0.28
LIN28A-201ENST00000254231 EFCAB5A4FU69 1503 aa16.75■□□□□ 0.27
LIN28A-201ENST00000254231 NUP153P49790 1475 aaKnown RBP16.75■□□□□ 0.27
LIN28A-201ENST00000254231 ARHGEF11O15085 1522 aa16.74■□□□□ 0.27
LIN28A-201ENST00000254231 SETD5Q9C0A6 1442 aa16.74■□□□□ 0.27
LIN28A-201ENST00000254231 GGT6Q6P531 493 aa16.73■□□□□ 0.27
LIN28A-201ENST00000254231 CCDC18Q5T9S5 1454 aa16.73■□□□□ 0.27
LIN28A-201ENST00000254231 FAM69CQ0P6D2 419 aa16.72■□□□□ 0.27
LIN28A-201ENST00000254231 NUP160Q12769 1436 aa16.72■□□□□ 0.27
LIN28A-201ENST00000254231 MYOM3Q5VTT5 1437 aa16.72■□□□□ 0.27
LIN28A-201ENST00000254231 PTPRKQ15262 1439 aa16.71■□□□□ 0.27
LIN28A-201ENST00000254231 RAPGEF3O95398 923 aa16.71■□□□□ 0.27
LIN28A-201ENST00000254231 DHX57Q6P158 1386 aaKnown RBP16.71■□□□□ 0.27
LIN28A-201ENST00000254231 NUTM2DQ5VT03 806 aaPredicted RBP16.71■□□□□ 0.26
LIN28A-201ENST00000254231 MAGI3Q5TCQ9 1506 aa16.7■□□□□ 0.26
LIN28A-201ENST00000254231 ATP10BO94823 1461 aa16.7■□□□□ 0.26
LIN28A-201ENST00000254231 CHD1O14646 1710 aa16.69■□□□□ 0.26
LIN28A-201ENST00000254231 UACAQ9BZF9 1416 aa16.69■□□□□ 0.26
LIN28A-201ENST00000254231 PKD2Q13563 968 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms