RNA–Protein interactions for RNA: ENST00000217109.8

CSTF1-201, Transcript of cleavage stimulation factor subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSTF1, Length 4,290 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF1-201ENST00000217109 IGF1RP08069 1367 aa13.62□□□□□ -0.23
CSTF1-201ENST00000217109 TDRD9Q8NDG6 1382 aaKnown RBP13.62□□□□□ -0.23
CSTF1-201ENST00000217109 FHAD1B1AJZ9 1412 aa13.61□□□□□ -0.23
CSTF1-201ENST00000217109 EIF4G1Q04637 1599 aaKnown RBP13.61□□□□□ -0.23
CSTF1-201ENST00000217109 UNC13AQ9UPW8 1703 aa13.61□□□□□ -0.23
CSTF1-201ENST00000217109 SETD5Q9C0A6 1442 aa13.6□□□□□ -0.23
CSTF1-201ENST00000217109 HNRNPUQ00839 825 aaKnown RBP eCLIP13.6□□□□□ -0.23
CSTF1-201ENST00000217109 NCAPD3P42695 1498 aa13.6□□□□□ -0.23
CSTF1-201ENST00000217109 ARAP1Q96P48 1450 aa13.6□□□□□ -0.23
CSTF1-201ENST00000217109 FHOD3Q2V2M9 1422 aa13.59□□□□□ -0.23
CSTF1-201ENST00000217109 CDK11AQ9UQ88 783 aaPredicted RBP13.57□□□□□ -0.24
CSTF1-201ENST00000217109 KCNH8Q96L42 1107 aa13.57□□□□□ -0.24
CSTF1-201ENST00000217109 MYT1LQ9UL68 1186 aa13.56□□□□□ -0.24
CSTF1-201ENST00000217109 PRXQ9BXM0 1461 aa13.55□□□□□ -0.24
CSTF1-201ENST00000217109 FAM9BQ8IZU0 186 aa13.55□□□□□ -0.24
CSTF1-201ENST00000217109 SUPT16HQ9Y5B9 1047 aaKnown RBP13.54□□□□□ -0.24
CSTF1-201ENST00000217109 TOP2BQ02880 1626 aa13.53□□□□□ -0.24
CSTF1-201ENST00000217109 CUX1P39880 1505 aa13.52□□□□□ -0.24
CSTF1-201ENST00000217109 IRX6P78412 446 aaPredicted RBP13.52□□□□□ -0.24
CSTF1-201ENST00000217109 FGD5Q6ZNL6 1462 aa13.52□□□□□ -0.25
CSTF1-201ENST00000217109 CFTRP13569 1480 aa13.51□□□□□ -0.25
CSTF1-201ENST00000217109 ARHGAP35Q9NRY4 1499 aa13.51□□□□□ -0.25
CSTF1-201ENST00000217109 SLC4A1APQ9BWU0 796 aaKnown RBP13.5□□□□□ -0.25
CSTF1-201ENST00000217109 FANCD2Q9BXW9 1451 aa13.5□□□□□ -0.25
CSTF1-201ENST00000217109 RAD54L2Q9Y4B4 1467 aa13.5□□□□□ -0.25
CSTF1-201ENST00000217109 CHMP7Q8WUX9 453 aaPredicted RBP13.49□□□□□ -0.25
CSTF1-201ENST00000217109 EIF4G2P78344 907 aaKnown RBP eCLIP13.49□□□□□ -0.25
CSTF1-201ENST00000217109 FOXD1Q16676 465 aa13.48□□□□□ -0.25
CSTF1-201ENST00000217109 PPP1R15AO75807 674 aaPredicted RBP13.48□□□□□ -0.25
CSTF1-201ENST00000217109 PHLDB1Q86UU1 1377 aa13.48□□□□□ -0.25
CSTF1-201ENST00000217109 PEG3Q9GZU2 1588 aa13.48□□□□□ -0.25
CSTF1-201ENST00000217109 ERICH3Q5RHP9 1530 aa13.47□□□□□ -0.25
CSTF1-201ENST00000217109 SENP3-EIF4A1A0A087X0R7 540 aa13.46□□□□□ -0.25
CSTF1-201ENST00000217109 MRS2Q9HD23 443 aa13.45□□□□□ -0.26
CSTF1-201ENST00000217109 KDM2AQ9Y2K7 1162 aa13.44□□□□□ -0.26
CSTF1-201ENST00000217109 TIMELESSQ9UNS1 1208 aa13.44□□□□□ -0.26
CSTF1-201ENST00000217109 FMN1Q68DA7 1419 aa13.43□□□□□ -0.26
CSTF1-201ENST00000217109 RRBP1Q9P2E9 1410 aaKnown RBP13.42□□□□□ -0.26
CSTF1-201ENST00000217109 CFDP1Q9UEE9 299 aaPredicted RBP13.41□□□□□ -0.26
CSTF1-201ENST00000217109 LRRC9Q6ZRR7 1453 aa13.39□□□□□ -0.27
CSTF1-201ENST00000217109 HMGXB3Q12766 1538 aa13.39□□□□□ -0.27
CSTF1-201ENST00000217109 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.38□□□□□ -0.274e-7■■■■□ 22.7
CSTF1-201ENST00000217109 TSPY4P0CV99 314 aa13.38□□□□□ -0.27
CSTF1-201ENST00000217109 TSPY10P0CW01 314 aa13.38□□□□□ -0.27
CSTF1-201ENST00000217109 SALL2Q9Y467 1007 aaPredicted RBP13.38□□□□□ -0.27
CSTF1-201ENST00000217109 PDS5BQ9NTI5 1447 aa13.38□□□□□ -0.27
CSTF1-201ENST00000217109 HSPA5P11021 654 aaKnown RBP13.38□□□□□ -0.27
CSTF1-201ENST00000217109 NESP48681 1621 aa13.38□□□□□ -0.27
CSTF1-201ENST00000217109 MPHOSPH9Q99550 1183 aa13.35□□□□□ -0.27
CSTF1-201ENST00000217109 PLEKHD1A6NEE1 506 aa13.34□□□□□ -0.27
CSTF1-201ENST00000217109 DNAJC5BQ9UF47 199 aa13.33□□□□□ -0.28
CSTF1-201ENST00000217109 CCER2I3L3R5 266 aa13.32□□□□□ -0.28
CSTF1-201ENST00000217109 L3MBTL2Q969R5 705 aa13.32□□□□□ -0.28
CSTF1-201ENST00000217109 TMC1Q8TDI8 760 aa13.32□□□□□ -0.28
CSTF1-201ENST00000217109 RGL3Q3MIN7 710 aa13.31□□□□□ -0.28
CSTF1-201ENST00000217109 FGD6Q6ZV73 1430 aa13.29□□□□□ -0.28
CSTF1-201ENST00000217109 GAPVD1Q14C86 1478 aa13.29□□□□□ -0.28
CSTF1-201ENST00000217109 CCDC18Q5T9S5 1454 aa13.28□□□□□ -0.28
CSTF1-201ENST00000217109 POLA1P09884 1462 aaPredicted RBP13.27□□□□□ -0.28
CSTF1-201ENST00000217109 BIVM-ERCC5R4GMW8 1640 aa13.27□□□□□ -0.29
CSTF1-201ENST00000217109 TIAM1Q13009 1591 aa13.27□□□□□ -0.29
CSTF1-201ENST00000217109 TSHZ2Q9NRE2 1034 aa13.26□□□□□ -0.29
CSTF1-201ENST00000217109 CC2D2AQ9P2K1 1620 aa13.26□□□□□ -0.29
CSTF1-201ENST00000217109 CASKIN1Q8WXD9 1431 aa13.26□□□□□ -0.29
CSTF1-201ENST00000217109 TOPBP1Q92547 1522 aa13.25□□□□□ -0.29
CSTF1-201ENST00000217109 CARD11Q9BXL7 1154 aa13.25□□□□□ -0.29
CSTF1-201ENST00000217109 PKD2Q13563 968 aa13.24□□□□□ -0.29
CSTF1-201ENST00000217109 ZNF644Q9H582 1327 aaPredicted RBP13.24□□□□□ -0.29
CSTF1-201ENST00000217109 ERCC6Q03468 1493 aa13.23□□□□□ -0.29
CSTF1-201ENST00000217109 AQRO60306 1485 aaKnown RBP eCLIP13.23□□□□□ -0.298e-7■■■■■ 29
CSTF1-201ENST00000217109 CCDC136Q96JN2 1154 aa13.21□□□□□ -0.29
CSTF1-201ENST00000217109 MYOM3Q5VTT5 1437 aa13.21□□□□□ -0.3
CSTF1-201ENST00000217109 DCAF11Q8TEB1 546 aa13.2□□□□□ -0.3
CSTF1-201ENST00000217109 NCOA2Q15596 1464 aa13.2□□□□□ -0.3
CSTF1-201ENST00000217109 WDR97A6NE52 1622 aa13.2□□□□□ -0.3
CSTF1-201ENST00000217109 FYCO1Q9BQS8 1478 aa13.19□□□□□ -0.3
CSTF1-201ENST00000217109 B4GALNT3Q6L9W6 998 aa13.19□□□□□ -0.3
CSTF1-201ENST00000217109 UACAQ9BZF9 1416 aa13.19□□□□□ -0.3
CSTF1-201ENST00000217109 NPM2Q86SE8 214 aaKnown RBP13.16□□□□□ -0.3
CSTF1-201ENST00000217109 RBM19Q9Y4C8 960 aaKnown RBP13.16□□□□□ -0.3
CSTF1-201ENST00000217109 PCF11O94913 1555 aaKnown RBP13.16□□□□□ -0.3
CSTF1-201ENST00000217109 JPH4Q96JJ6 628 aa13.16□□□□□ -0.3
CSTF1-201ENST00000217109 DAXXQ9UER7 740 aaPredicted RBP13.15□□□□□ -0.3
CSTF1-201ENST00000217109 CHGAP10645 457 aaKnown RBP13.14□□□□□ -0.31
CSTF1-201ENST00000217109 ABCA10Q8WWZ4 1543 aa13.14□□□□□ -0.31
CSTF1-201ENST00000217109 NUP155O75694 1391 aa13.14□□□□□ -0.31
CSTF1-201ENST00000217109 HNRNPMP52272 730 aaKnown RBP eCLIP13.14□□□□□ -0.31
CSTF1-201ENST00000217109 ANP32EQ9BTT0 268 aa13.13□□□□□ -0.31
CSTF1-201ENST00000217109 DNMBPQ6XZF7 1577 aa13.13□□□□□ -0.31
CSTF1-201ENST00000217109 WASHC2AQ641Q2 1341 aa13.13□□□□□ -0.31
CSTF1-201ENST00000217109 PPP4R2Q9NY27 417 aa13.13□□□□□ -0.31
CSTF1-201ENST00000217109 PRKRIP1Q9H875 184 aaPredicted RBP13.12□□□□□ -0.31
CSTF1-201ENST00000217109 RTL5Q5HYW3 569 aaPredicted RBP13.11□□□□□ -0.31
CSTF1-201ENST00000217109 EFCAB5A4FU69 1503 aa13.11□□□□□ -0.31
CSTF1-201ENST00000217109 HFM1A2PYH4 1435 aa13.1□□□□□ -0.31
CSTF1-201ENST00000217109 ANP32AP39687 249 aaKnown RBP13.1□□□□□ -0.31
CSTF1-201ENST00000217109 NAIPQ13075 1403 aa13.09□□□□□ -0.31
CSTF1-201ENST00000217109 CC2D1BQ5T0F9 858 aaKnown RBP13.08□□□□□ -0.31
CSTF1-201ENST00000217109 CARMIL2Q6F5E8 1435 aa13.08□□□□□ -0.31
CSTF1-201ENST00000217109 MAPKBP1O60336 1514 aa13.08□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms