RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 PDCD10Q9BUL8 212 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 AGPAT4-IT1Q9H0P7 198 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 CADP27708 2225 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 TCHHQ07283 1943 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 SBF2Q86WG5 1849 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 LRRIQ1Q96JM4 1722 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 ABCA3Q99758 1704 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 TNS1Q9HBL0 1735 aaKnown RBP0.38□□□□□ -2.35
VPS29-205ENST00000548539 SCRIBQ14160 1630 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 ZFYVE16Q7Z3T8 1539 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 ABCC5O15440 1437 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 PPIP5K1Q6PFW1 1433 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 NAV3Q8IVL0 2385 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 VPS8Q8N3P4 1428 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 CASKIN1Q8WXD9 1431 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 CUL7Q14999 1698 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 TNCP24821 2201 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 SPAG17Q6Q759 2223 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 ADGRB1O14514 1584 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 hADV29S1A0JD25 119 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 H3BQ15 152 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 GUCA1AP43080 201 aaPredicted RBP0.37□□□□□ -2.35
VPS29-205ENST00000548539 UBA52P62987 128 aaKnown RBP0.37□□□□□ -2.35
VPS29-205ENST00000548539 RBM3P98179 157 aaKnown RBP0.37□□□□□ -2.35
VPS29-205ENST00000548539 WFDC2Q14508 124 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 INSL4Q14641 139 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 COL5A1-AS1Q5SY13 56 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 ZNF720Q7Z2F6 126 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 C8orf59Q8N0T1 100 aaPredicted RBP0.37□□□□□ -2.35
VPS29-205ENST00000548539 TTC9CQ8N5M4 171 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 TSLPQ969D9 159 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 TMEM191AQ9H0A3 160 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 DPH3P1Q9H4G8 78 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 IER3IP1Q9Y5U9 82 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 ARAP2Q8WZ64 1704 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 ANKRD26Q9UPS8 1709 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 KDM6BO15054 1643 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 SMG6Q86US8 1419 aaKnown RBP0.37□□□□□ -2.35
VPS29-205ENST00000548539 TET3O43151 1660 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 COL4A6Q14031 1691 aa0.37□□□□□ -2.35
VPS29-205ENST00000548539 TTC37Q6PGP7 1564 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 MAP2P11137 1827 aaKnown RBP0.36□□□□□ -2.35
VPS29-205ENST00000548539 ARFGEF1Q9Y6D6 1849 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 A2ML1A8K2U0 1454 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 ARHGAP35Q9NRY4 1499 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 CC2D2AQ9P2K1 1620 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 PDCD11Q14690 1871 aaKnown RBP0.36□□□□□ -2.35
VPS29-205ENST00000548539 TRGV1A0A0A0MS02 117 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 NDUFB6O95139 128 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 CFDP00746 253 aaPredicted RBP0.36□□□□□ -2.35
VPS29-205ENST00000548539 IFITM1P13164 125 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 SNCAP37840 140 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 GNG4P50150 75 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 TPPP2P59282 170 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 DCDP81605 110 aaKnown RBP0.36□□□□□ -2.35
VPS29-205ENST00000548539 MRPS10P82664 201 aaKnown RBP0.36□□□□□ -2.35
VPS29-205ENST00000548539 C9orf153Q5TBE3 101 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 MRPL54Q6P161 138 aaKnown RBP0.36□□□□□ -2.35
VPS29-205ENST00000548539 Q8N8P6 123 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 FAM213BQ8TBF2 198 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 SNRNP25Q9BV90 132 aaKnown RBP0.36□□□□□ -2.35
VPS29-205ENST00000548539 RERGLQ9H628 205 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 HIGD1BQ9P298 99 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 SCP2D1Q9UJQ7 156 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 CDK13Q14004 1512 aaKnown RBP0.36□□□□□ -2.35
VPS29-205ENST00000548539 ANKRD36A6QL64 1941 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 PATJQ8NI35 1801 aa0.36□□□□□ -2.35
VPS29-205ENST00000548539 MARF1Q9Y4F3 1742 aaKnown RBP0.35□□□□□ -2.35
VPS29-205ENST00000548539 ADGRL2O95490 1459 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 MYOM2P54296 1465 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 BCL9LQ86UU0 1499 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 MADDQ8WXG6 1647 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 IGLC7A0M8Q6 106 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 CLPSL1A2RUU4 121 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 TMEM262E9PQX1 116 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 GNGT2O14610 69 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 TNFP01375 233 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 APOC3P02656 99 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 TRAPPC2P0DI81 140 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 TRAPPC2BP0DI82 140 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 CBLN1P23435 193 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 UBE2D1P51668 147 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 EDDM3BP56851 147 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 Q0VG73 95 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 Q56UQ5 140 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 NMSQ5H8A3 153 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 SFTA2Q6UW10 78 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 GTF2H5Q6ZYL4 71 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 VAMP8Q9BV40 100 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 SERP1Q9Y6X1 66 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 V9GYS6 101 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 CACNA1CQ13936 2221 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 ZNF236Q9UL36 1845 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 SPHKAPQ2M3C7 1700 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 MON2Q7Z3U7 1717 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 UBR1Q8IWV7 1749 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 GOLGA3Q08378 1498 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 PLEKHH2Q8IVE3 1493 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 TEX14Q8IWB6 1497 aa0.35□□□□□ -2.35
VPS29-205ENST00000548539 NRXN1Q9ULB1 1477 aa0.35□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms