RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 FAM213BQ8TBF2 198 aa2.01□□□□□ -2.09
SCFD1-211ENST00000554437 TSLPQ969D9 159 aa2.01□□□□□ -2.09
SCFD1-211ENST00000554437 BRWD1Q9NSI6 2320 aa2.01□□□□□ -2.09
SCFD1-211ENST00000554437 CEP192Q8TEP8 1941 aa2.01□□□□□ -2.09
SCFD1-211ENST00000554437 ARHGAP35Q9NRY4 1499 aa2.01□□□□□ -2.09
SCFD1-211ENST00000554437 HCRTO43612 131 aa2□□□□□ -2.09
SCFD1-211ENST00000554437 C20orf197Q8N268 126 aa2□□□□□ -2.09
SCFD1-211ENST00000554437 MGST2Q99735 147 aa2□□□□□ -2.09
SCFD1-211ENST00000554437 ADGRB2O60241 1585 aa2□□□□□ -2.09
SCFD1-211ENST00000554437 TRBV7-3A0A075B6L6 115 aa1.99□□□□□ -2.09
SCFD1-211ENST00000554437 SFT2D2O95562 160 aa1.99□□□□□ -2.09
SCFD1-211ENST00000554437 FAUP35544 74 aaKnown RBP1.99□□□□□ -2.09
SCFD1-211ENST00000554437 SSBP1Q04837 148 aaKnown RBP1.99□□□□□ -2.09
SCFD1-211ENST00000554437 GDF5OSQ5U4N7 250 aa1.99□□□□□ -2.09
SCFD1-211ENST00000554437 DEFB132Q7Z7B7 95 aa1.99□□□□□ -2.09
SCFD1-211ENST00000554437 TNS1Q9HBL0 1735 aaKnown RBP1.99□□□□□ -2.09
SCFD1-211ENST00000554437 SIP14410 1827 aa1.98□□□□□ -2.09
SCFD1-211ENST00000554437 PHIPQ8WWQ0 1821 aa1.98□□□□□ -2.09
SCFD1-211ENST00000554437 PRDM15P57071 1507 aaPredicted RBP1.98□□□□□ -2.09
SCFD1-211ENST00000554437 TRBV6-7A0A0A0MS04 114 aa1.98□□□□□ -2.09
SCFD1-211ENST00000554437 TRBV7-7A0A0K0K1E9 115 aa1.98□□□□□ -2.09
SCFD1-211ENST00000554437 NDUFC1O43677 76 aa1.98□□□□□ -2.09
SCFD1-211ENST00000554437 FXYD4P59646 89 aa1.98□□□□□ -2.09
SCFD1-211ENST00000554437 HEATR1Q9H583 2144 aaKnown RBP1.98□□□□□ -2.09
SCFD1-211ENST00000554437 MANBALQ9NQG1 85 aa1.98□□□□□ -2.09
SCFD1-211ENST00000554437 CTTNBP2Q8WZ74 1663 aa1.98□□□□□ -2.09
SCFD1-211ENST00000554437 STRCP1A6NGW2 1772 aa1.98□□□□□ -2.09
SCFD1-211ENST00000554437 HMCN1Q96RW7 5635 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 COL5A3P25940 1745 aaPredicted RBP1.97□□□□□ -2.09
SCFD1-211ENST00000554437 ABCA3Q99758 1704 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 ABCC3O15438 1527 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 TOPAZ1Q8N9V7 1692 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 IGKV2-29A2NJV5 120 aaPredicted RBP1.97□□□□□ -2.09
SCFD1-211ENST00000554437 CLPSL1A2RUU4 121 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 J3QKU1 62 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 K7EP34 96 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 CCL3L1P16619 93 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 DEFB103AP81534 67 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 FXYD3Q14802 87 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 PEA15Q15121 130 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 ZNF56Q15929 161 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 KRTAP13-4Q3LI77 160 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 XAF1Q6GPH4 301 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 SERP2Q8N6R1 65 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 COX7B2Q8TF08 81 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 PPP1R1CQ8WVI7 109 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 FAM167A-AS1Q96KT0 104 aa1.97□□□□□ -2.09
SCFD1-211ENST00000554437 KDM5AP29375 1690 aaKnown RBP1.96□□□□□ -2.1
SCFD1-211ENST00000554437 MED12LQ86YW9 2145 aa1.96□□□□□ -2.1
SCFD1-211ENST00000554437 NBDYA0A0U1RRE5 68 aa1.96□□□□□ -2.1
SCFD1-211ENST00000554437 H3BQF6 201 aa1.96□□□□□ -2.1
SCFD1-211ENST00000554437 ELOF1P60002 83 aaKnown RBP1.96□□□□□ -2.1
SCFD1-211ENST00000554437 FAM74A4Q5TZK3 123 aa1.96□□□□□ -2.1
SCFD1-211ENST00000554437 TRGV9Q99603 122 aa1.96□□□□□ -2.1
SCFD1-211ENST00000554437 UQCR10Q9UDW1 63 aa1.96□□□□□ -2.1
SCFD1-211ENST00000554437 LAMC3Q9Y6N6 1575 aa1.96□□□□□ -2.1
SCFD1-211ENST00000554437 NWD2Q9ULI1 1742 aa1.96□□□□□ -2.1
SCFD1-211ENST00000554437 ZNF142P52746 1687 aaPredicted RBP1.96□□□□□ -2.1
SCFD1-211ENST00000554437 SHROOM2Q13796 1616 aa1.95□□□□□ -2.1
SCFD1-211ENST00000554437 BAZ2BQ9UIF8 2168 aaKnown RBP1.95□□□□□ -2.1
SCFD1-211ENST00000554437 MARF1Q9Y4F3 1742 aaKnown RBP1.95□□□□□ -2.1
SCFD1-211ENST00000554437 BLMP54132 1417 aaPredicted RBP1.95□□□□□ -2.1
SCFD1-211ENST00000554437 UACAQ9BZF9 1416 aa1.95□□□□□ -2.1
SCFD1-211ENST00000554437 IGKV2-40A0A087WW87 121 aaPredicted RBP1.95□□□□□ -2.1
SCFD1-211ENST00000554437 IGKV3D-7A0A0C4DH55 119 aa1.95□□□□□ -2.1
SCFD1-211ENST00000554437 IGKV3OR2-268A0A0C4DH90 116 aa1.95□□□□□ -2.1
SCFD1-211ENST00000554437 CHKB-CPT1BH3BT56 60 aa1.95□□□□□ -2.1
SCFD1-211ENST00000554437 CYB5AP00167 134 aa1.95□□□□□ -2.1
SCFD1-211ENST00000554437 IGKV2D-40P01614 121 aaPredicted RBP1.95□□□□□ -2.1
SCFD1-211ENST00000554437 APOC3P02656 99 aa1.95□□□□□ -2.1
SCFD1-211ENST00000554437 UNQ6190/PRO20217Q6UXQ8 127 aa1.95□□□□□ -2.1
SCFD1-211ENST00000554437 C20orf78Q9BR46 151 aa1.95□□□□□ -2.1
SCFD1-211ENST00000554437 CACFD1Q9UGQ2 172 aa1.95□□□□□ -2.1
SCFD1-211ENST00000554437 PRO1854Q9UHT4 67 aa1.95□□□□□ -2.1
SCFD1-211ENST00000554437 MDC1Q14676 2089 aaKnown RBP1.95□□□□□ -2.1
SCFD1-211ENST00000554437 MYOFQ9NZM1 2061 aa1.95□□□□□ -2.1
SCFD1-211ENST00000554437 PTPRDP23468 1912 aa1.95□□□□□ -2.1
SCFD1-211ENST00000554437 TRAV22A0A0B4J277 110 aa1.94□□□□□ -2.1
SCFD1-211ENST00000554437 TRAPPC2P0DI81 140 aa1.94□□□□□ -2.1
SCFD1-211ENST00000554437 TRAPPC2BP0DI82 140 aa1.94□□□□□ -2.1
SCFD1-211ENST00000554437 EDDM3BP56851 147 aa1.94□□□□□ -2.1
SCFD1-211ENST00000554437 UBE2D3P61077 147 aa1.94□□□□□ -2.1
SCFD1-211ENST00000554437 UBE2D2P62837 147 aa1.94□□□□□ -2.1
SCFD1-211ENST00000554437 C5orf56Q8N8D9 126 aa1.94□□□□□ -2.1
SCFD1-211ENST00000554437 ZNF563Q8TA94 476 aa1.94□□□□□ -2.1
SCFD1-211ENST00000554437 OBSCN-AS1Q96MR7 158 aa1.94□□□□□ -2.1
SCFD1-211ENST00000554437 DYNLRB1Q9NP97 96 aa1.94□□□□□ -2.1
SCFD1-211ENST00000554437 LENEPQ9Y5L5 61 aa1.94□□□□□ -2.1
SCFD1-211ENST00000554437 CR1P17927 2039 aa1.94□□□□□ -2.1
SCFD1-211ENST00000554437 PXDNQ92626 1479 aa1.94□□□□□ -2.1
SCFD1-211ENST00000554437 SHANK2Q9UPX8 1470 aa1.94□□□□□ -2.1
SCFD1-211ENST00000554437 ALPK2Q86TB3 2170 aa1.93□□□□□ -2.1
SCFD1-211ENST00000554437 FN1P02751 2386 aaKnown RBP1.93□□□□□ -2.1
SCFD1-211ENST00000554437 UQCRHLA0A096LP55 91 aa1.93□□□□□ -2.1
SCFD1-211ENST00000554437 PPP1R17O96001 155 aa1.93□□□□□ -2.1
SCFD1-211ENST00000554437 NMBP08949 121 aa1.93□□□□□ -2.1
SCFD1-211ENST00000554437 COX6CP09669 75 aa1.93□□□□□ -2.1
SCFD1-211ENST00000554437 Q5VV11 94 aa1.93□□□□□ -2.1
SCFD1-211ENST00000554437 Q8N6K4 173 aa1.93□□□□□ -2.1
SCFD1-211ENST00000554437 S100A16Q96FQ6 103 aaKnown RBP1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms