RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 ZNF56Q15929 161 aa10.67□□□□□ -0.7
CHMP1A-206ENST00000549139 LELP1Q5T871 98 aa10.67□□□□□ -0.7
CHMP1A-206ENST00000549139 WFDC10BQ8IUB3 73 aa10.67□□□□□ -0.7
CHMP1A-206ENST00000549139 OR10G8Q8NGN5 311 aa10.67□□□□□ -0.7
CHMP1A-206ENST00000549139 CNFNQ9BYD5 112 aa10.67□□□□□ -0.7
CHMP1A-206ENST00000549139 OSTCQ9NRP0 149 aa10.67□□□□□ -0.7
CHMP1A-206ENST00000549139 TRAV9-2A0A087WT02 112 aa10.66□□□□□ -0.7
CHMP1A-206ENST00000549139 TRAV8-6A0A0B4J262 113 aa10.66□□□□□ -0.7
CHMP1A-206ENST00000549139 F5H697 171 aa10.66□□□□□ -0.7
CHMP1A-206ENST00000549139 DNAH10OSP0CZ25 163 aa10.66□□□□□ -0.7
CHMP1A-206ENST00000549139 RPL36AP83881 106 aaKnown RBP10.66□□□□□ -0.7
CHMP1A-206ENST00000549139 GTSF1Q8WW33 167 aa10.66□□□□□ -0.7
CHMP1A-206ENST00000549139 RPL36ALQ969Q0 106 aaKnown RBP10.66□□□□□ -0.7
CHMP1A-206ENST00000549139 NAT8Q9UHE5 227 aa10.66□□□□□ -0.7
CHMP1A-206ENST00000549139 TRBV7-3A0A075B6L6 115 aa10.65□□□□□ -0.7
CHMP1A-206ENST00000549139 EVI2AP22794 236 aa10.65□□□□□ -0.7
CHMP1A-206ENST00000549139 RPL23P62829 140 aaKnown RBP10.65□□□□□ -0.7
CHMP1A-206ENST00000549139 OR10J3Q5JRS4 329 aa10.65□□□□□ -0.7
CHMP1A-206ENST00000549139 A0A087WWC5 75 aa10.64□□□□□ -0.71
CHMP1A-206ENST00000549139 IGHV3-38A0A0C4DH36 116 aa10.64□□□□□ -0.71
CHMP1A-206ENST00000549139 FAM231BA6NCW3 169 aa10.64□□□□□ -0.71
CHMP1A-206ENST00000549139 XGP55808 180 aa10.64□□□□□ -0.71
CHMP1A-206ENST00000549139 UBE2D3P61077 147 aa10.64□□□□□ -0.71
CHMP1A-206ENST00000549139 UBE2D2P62837 147 aa10.64□□□□□ -0.71
CHMP1A-206ENST00000549139 TWIST1Q15672 202 aa10.64□□□□□ -0.71
CHMP1A-206ENST00000549139 C15orf54Q8N8G6 183 aa10.64□□□□□ -0.71
CHMP1A-206ENST00000549139 NEXN-AS1Q8NBZ9 246 aa10.64□□□□□ -0.71
CHMP1A-206ENST00000549139 ISOC2Q96AB3 205 aa10.64□□□□□ -0.71
CHMP1A-206ENST00000549139 GFRA4Q9GZZ7 299 aa10.64□□□□□ -0.71
CHMP1A-206ENST00000549139 DPH3P1Q9H4G8 78 aa10.64□□□□□ -0.71
CHMP1A-206ENST00000549139 IFITM2Q01629 132 aa10.63□□□□□ -0.71
CHMP1A-206ENST00000549139 LINC01556Q5JQF7 62 aa10.63□□□□□ -0.71
CHMP1A-206ENST00000549139 CLLU1Q5K131 121 aa10.63□□□□□ -0.71
CHMP1A-206ENST00000549139 TSKUQ8WUA8 353 aa10.63□□□□□ -0.71
CHMP1A-206ENST00000549139 MGPP08493 103 aa10.62□□□□□ -0.71
CHMP1A-206ENST00000549139 C10orf126Q8N4M7 172 aa10.62□□□□□ -0.71
CHMP1A-206ENST00000549139 PGLYRP4Q96LB8 373 aa10.62□□□□□ -0.71
CHMP1A-206ENST00000549139 V9GYV3 84 aa10.62□□□□□ -0.71
CHMP1A-206ENST00000549139 H7C1H1 209 aa10.61□□□□□ -0.71
CHMP1A-206ENST00000549139 M0QY20 66 aa10.61□□□□□ -0.71
CHMP1A-206ENST00000549139 ADIRFQ15847 76 aa10.61□□□□□ -0.71
CHMP1A-206ENST00000549139 Q5VSD8 79 aa10.61□□□□□ -0.71
CHMP1A-206ENST00000549139 DNAJC30Q96LL9 226 aa10.61□□□□□ -0.71
CHMP1A-206ENST00000549139 UBR4Q5T4S7 5183 aa10.61□□□□□ -0.71
CHMP1A-206ENST00000549139 SUMO4Q6EEV6 95 aa10.6□□□□□ -0.71
CHMP1A-206ENST00000549139 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.6□□□□□ -0.71
CHMP1A-206ENST00000549139 BORCS7Q96B45 105 aa10.6□□□□□ -0.71
CHMP1A-206ENST00000549139 HIGD1CA8MV81 97 aa10.59□□□□□ -0.71
CHMP1A-206ENST00000549139 SMIM15Q7Z3B0 74 aa10.59□□□□□ -0.71
CHMP1A-206ENST00000549139 NFE4Q86UQ8 179 aa10.59□□□□□ -0.71
CHMP1A-206ENST00000549139 TNFRSF18Q9Y5U5 241 aa10.59□□□□□ -0.71
CHMP1A-206ENST00000549139 A0A1B0GUT8 65 aa10.58□□□□□ -0.72
CHMP1A-206ENST00000549139 IBA57-AS1B1ANH7 110 aa10.58□□□□□ -0.72
CHMP1A-206ENST00000549139 RASL11AQ6T310 242 aa10.58□□□□□ -0.72
CHMP1A-206ENST00000549139 Q6ZRN7 208 aaPredicted RBP10.58□□□□□ -0.72
CHMP1A-206ENST00000549139 DAZ4Q86SG3 579 aaKnown RBP10.58□□□□□ -0.72
CHMP1A-206ENST00000549139 DAZ3Q9NR90 486 aaKnown RBP10.58□□□□□ -0.72
CHMP1A-206ENST00000549139 IGHV3-30P01768 117 aa10.57□□□□□ -0.72
CHMP1A-206ENST00000549139 IGHV3-33P01772 117 aa10.57□□□□□ -0.72
CHMP1A-206ENST00000549139 IGHV3-30-3P0DP02 117 aa10.57□□□□□ -0.72
CHMP1A-206ENST00000549139 IGHV3-30-5P0DP03 117 aa10.57□□□□□ -0.72
CHMP1A-206ENST00000549139 TMEM97Q5BJF2 176 aa10.57□□□□□ -0.72
CHMP1A-206ENST00000549139 NIT2Q9NQR4 276 aa10.57□□□□□ -0.72
CHMP1A-206ENST00000549139 PGPEP1Q9NXJ5 209 aa10.57□□□□□ -0.72
CHMP1A-206ENST00000549139 TRBV6-8A0A0A6YYG3 113 aa10.56□□□□□ -0.72
CHMP1A-206ENST00000549139 FUSP35637 526 aaKnown RBP eCLIP10.56□□□□□ -0.72
CHMP1A-206ENST00000549139 NUP35Q8NFH5 326 aa10.56□□□□□ -0.72
CHMP1A-206ENST00000549139 FRZBQ92765 325 aa10.56□□□□□ -0.72
CHMP1A-206ENST00000549139 NAT8BQ9UHF3 227 aa10.56□□□□□ -0.72
CHMP1A-206ENST00000549139 SMIM27A0A1W2PRY6 76 aa10.55□□□□□ -0.72
CHMP1A-206ENST00000549139 NIT1Q86X76 327 aa10.55□□□□□ -0.72
CHMP1A-206ENST00000549139 PNRC1Q12796 327 aaPredicted RBP10.54□□□□□ -0.72
CHMP1A-206ENST00000549139 RIGQ13278 110 aa10.54□□□□□ -0.72
CHMP1A-206ENST00000549139 GATD1Q8NB37 220 aa10.54□□□□□ -0.72
CHMP1A-206ENST00000549139 CHCHD7Q9BUK0 85 aa10.54□□□□□ -0.72
CHMP1A-206ENST00000549139 TMEM191AQ9H0A3 160 aa10.54□□□□□ -0.72
CHMP1A-206ENST00000549139 URGCP-MRPS24S4R325 110 aa10.54□□□□□ -0.72
CHMP1A-206ENST00000549139 LAGE3Q14657 143 aa10.53□□□□□ -0.72
CHMP1A-206ENST00000549139 CDPF1Q6NVV7 123 aa10.53□□□□□ -0.72
CHMP1A-206ENST00000549139 UQCC3Q6UW78 93 aa10.53□□□□□ -0.72
CHMP1A-206ENST00000549139 NTM-AS1Q6ZSK4 140 aa10.53□□□□□ -0.72
CHMP1A-206ENST00000549139 HMCN2Q8NDA2 5059 aa10.53□□□□□ -0.72
CHMP1A-206ENST00000549139 KRTAP10-1P60331 282 aa10.52□□□□□ -0.73
CHMP1A-206ENST00000549139 KCNIP4Q6PIL6 250 aa10.52□□□□□ -0.73
CHMP1A-206ENST00000549139 Q8N3U1 123 aa10.52□□□□□ -0.73
CHMP1A-206ENST00000549139 TRBV25-1A0A075B6N4 114 aa10.51□□□□□ -0.73
CHMP1A-206ENST00000549139 TRAV26-2A0A0B4J265 109 aa10.51□□□□□ -0.73
CHMP1A-206ENST00000549139 PPP1R2P9O14990 202 aa10.51□□□□□ -0.73
CHMP1A-206ENST00000549139 PKIAP61925 76 aa10.51□□□□□ -0.73
CHMP1A-206ENST00000549139 A0A087WX48 190 aa10.5□□□□□ -0.73
CHMP1A-206ENST00000549139 TRAV8-3A0A0A6YYJ7 113 aa10.5□□□□□ -0.73
CHMP1A-206ENST00000549139 TMEM262E9PQX1 116 aa10.5□□□□□ -0.73
CHMP1A-206ENST00000549139 RAB4AP20338 218 aa10.5□□□□□ -0.73
CHMP1A-206ENST00000549139 ELOBQ15370 118 aa10.5□□□□□ -0.73
CHMP1A-206ENST00000549139 IQCJQ1A5X6 159 aa10.5□□□□□ -0.73
CHMP1A-206ENST00000549139 ANAPC16Q96DE5 110 aa10.5□□□□□ -0.73
CHMP1A-206ENST00000549139 RNF185Q96GF1 192 aa10.5□□□□□ -0.73
CHMP1A-206ENST00000549139 IGHV1-24A0A0C4DH33 117 aa10.49□□□□□ -0.73
CHMP1A-206ENST00000549139 A0A1B0GW15 77 aa10.49□□□□□ -0.73
CHMP1A-206ENST00000549139 SMR3BP02814 79 aaPredicted RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 1089.9 ms