RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 NUDT11Q96G61 164 aa9.31□□□□□ -0.92
PTCH1-217ENST00000548420 GAGE12JA6NER3 117 aa9.3□□□□□ -0.92
PTCH1-217ENST00000548420 P01737 135 aa9.3□□□□□ -0.92
PTCH1-217ENST00000548420 EVI2AP22794 236 aa9.3□□□□□ -0.92
PTCH1-217ENST00000548420 GAGE1Q13065 139 aa9.3□□□□□ -0.92
PTCH1-217ENST00000548420 GAGE4Q13068 117 aa9.3□□□□□ -0.92
PTCH1-217ENST00000548420 GAGE5Q13069 117 aa9.3□□□□□ -0.92
PTCH1-217ENST00000548420 GAGE13Q4V321 117 aa9.3□□□□□ -0.92
PTCH1-217ENST00000548420 SPANXN1Q5VSR9 72 aa9.3□□□□□ -0.92
PTCH1-217ENST00000548420 OR10G8Q8NGN5 311 aa9.3□□□□□ -0.92
PTCH1-217ENST00000548420 FAM210AQ96ND0 272 aa9.3□□□□□ -0.92
PTCH1-217ENST00000548420 IGLV5-52A0A0A0MRZ9 124 aa9.29□□□□□ -0.92
PTCH1-217ENST00000548420 TRAV8-6A0A0B4J262 113 aa9.29□□□□□ -0.92
PTCH1-217ENST00000548420 MUC21A0A0G2JKD1 596 aa9.29□□□□□ -0.92
PTCH1-217ENST00000548420 MUC21A0A140T8X8 626 aa9.29□□□□□ -0.92
PTCH1-217ENST00000548420 XKRY2A2RUG3 117 aa9.29□□□□□ -0.92
PTCH1-217ENST00000548420 F2Z2F3 143 aa9.29□□□□□ -0.92
PTCH1-217ENST00000548420 HNRNPA3P51991 378 aaKnown RBP9.29□□□□□ -0.92
PTCH1-217ENST00000548420 TEX261Q6UWH6 196 aa9.29□□□□□ -0.92
PTCH1-217ENST00000548420 FER1L6-AS1Q8NA97 138 aa9.29□□□□□ -0.92
PTCH1-217ENST00000548420 A0A087WWC5 75 aa9.28□□□□□ -0.92
PTCH1-217ENST00000548420 OR10J3Q5JRS4 329 aa9.28□□□□□ -0.92
PTCH1-217ENST00000548420 TOR2AQ5JU69 321 aa9.28□□□□□ -0.92
PTCH1-217ENST00000548420 WDR73Q6P4I2 378 aa9.28□□□□□ -0.92
PTCH1-217ENST00000548420 Q6ZSA8 131 aa9.28□□□□□ -0.92
PTCH1-217ENST00000548420 NFE4Q86UQ8 179 aa9.28□□□□□ -0.92
PTCH1-217ENST00000548420 C10orf126Q8N4M7 172 aa9.28□□□□□ -0.92
PTCH1-217ENST00000548420 MSRB1Q9NZV6 116 aa9.28□□□□□ -0.92
PTCH1-217ENST00000548420 TRBV7-3A0A075B6L6 115 aa9.27□□□□□ -0.93
PTCH1-217ENST00000548420 IBA57-AS1B1ANH7 110 aa9.27□□□□□ -0.93
PTCH1-217ENST00000548420 SRP19P09132 144 aaKnown RBP9.27□□□□□ -0.93
PTCH1-217ENST00000548420 UBE2D3P61077 147 aa9.27□□□□□ -0.93
PTCH1-217ENST00000548420 UBE2D2P62837 147 aa9.27□□□□□ -0.93
PTCH1-217ENST00000548420 CACNG7P62955 275 aa9.27□□□□□ -0.93
PTCH1-217ENST00000548420 LYZL1Q6UWQ5 148 aa9.27□□□□□ -0.93
PTCH1-217ENST00000548420 FAM231DQ6ZW35 169 aa9.27□□□□□ -0.93
PTCH1-217ENST00000548420 CNFNQ9BYD5 112 aa9.27□□□□□ -0.93
PTCH1-217ENST00000548420 EIF5A2Q9GZV4 153 aaKnown RBP9.27□□□□□ -0.93
PTCH1-217ENST00000548420 RNASE7Q9H1E1 156 aaKnown RBP9.27□□□□□ -0.93
PTCH1-217ENST00000548420 CTRLP40313 264 aa9.26□□□□□ -0.93
PTCH1-217ENST00000548420 RPL36AP83881 106 aaKnown RBP9.26□□□□□ -0.93
PTCH1-217ENST00000548420 NEXN-AS1Q8NBZ9 246 aa9.26□□□□□ -0.93
PTCH1-217ENST00000548420 RPL36ALQ969Q0 106 aaKnown RBP9.26□□□□□ -0.93
PTCH1-217ENST00000548420 AP1S3Q96PC3 154 aa9.26□□□□□ -0.93
PTCH1-217ENST00000548420 RPP21Q9H633 154 aaKnown RBP9.26□□□□□ -0.93
PTCH1-217ENST00000548420 LPAP08519 4548 aa9.25□□□□□ -0.93
PTCH1-217ENST00000548420 SSTP61278 116 aa9.25□□□□□ -0.93
PTCH1-217ENST00000548420 SMIM17P0DL12 118 aa9.24□□□□□ -0.93
PTCH1-217ENST00000548420 NTF3P20783 257 aa9.24□□□□□ -0.93
PTCH1-217ENST00000548420 FOXA3P55318 350 aaPredicted RBP9.24□□□□□ -0.93
PTCH1-217ENST00000548420 ODF1Q14990 250 aa9.24□□□□□ -0.93
PTCH1-217ENST00000548420 ZNF56Q15929 161 aa9.24□□□□□ -0.93
PTCH1-217ENST00000548420 LINC01551Q86U37 167 aa9.24□□□□□ -0.93
PTCH1-217ENST00000548420 TPPP3Q9BW30 176 aa9.24□□□□□ -0.93
PTCH1-217ENST00000548420 M0QY20 66 aa9.23□□□□□ -0.93
PTCH1-217ENST00000548420 LCE2AQ5TA79 106 aaPredicted RBP9.23□□□□□ -0.93
PTCH1-217ENST00000548420 GTSF1Q8WW33 167 aa9.23□□□□□ -0.93
PTCH1-217ENST00000548420 SMIM7Q9BQ49 75 aa9.23□□□□□ -0.93
PTCH1-217ENST00000548420 C9JQL5 133 aa9.22□□□□□ -0.93
PTCH1-217ENST00000548420 F5H697 171 aa9.22□□□□□ -0.93
PTCH1-217ENST00000548420 GATCO43716 136 aaKnown RBP9.22□□□□□ -0.93
PTCH1-217ENST00000548420 IGHV3-30P01768 117 aa9.22□□□□□ -0.93
PTCH1-217ENST00000548420 IGHV3-33P01772 117 aa9.22□□□□□ -0.93
PTCH1-217ENST00000548420 TRGC1P0CF51 173 aa9.22□□□□□ -0.93
PTCH1-217ENST00000548420 IGHV3-30-3P0DP02 117 aa9.22□□□□□ -0.93
PTCH1-217ENST00000548420 IGHV3-30-5P0DP03 117 aa9.22□□□□□ -0.93
PTCH1-217ENST00000548420 CEBPGP53567 150 aa9.22□□□□□ -0.93
PTCH1-217ENST00000548420 LAGE3Q14657 143 aa9.22□□□□□ -0.93
PTCH1-217ENST00000548420 CT83Q5H943 113 aa9.22□□□□□ -0.93
PTCH1-217ENST00000548420 NIT1Q86X76 327 aa9.22□□□□□ -0.93
PTCH1-217ENST00000548420 Q8N3U1 123 aa9.22□□□□□ -0.93
PTCH1-217ENST00000548420 SMDT1Q9H4I9 107 aa9.22□□□□□ -0.93
PTCH1-217ENST00000548420 TRBV6-8A0A0A6YYG3 113 aa9.21□□□□□ -0.94
PTCH1-217ENST00000548420 LRCOL1A6NCL2 159 aa9.21□□□□□ -0.94
PTCH1-217ENST00000548420 ZNF727A8MUV8 499 aa9.21□□□□□ -0.94
PTCH1-217ENST00000548420 A8MWL6 223 aa9.21□□□□□ -0.94
PTCH1-217ENST00000548420 FAM74A3Q4VXF1 159 aa9.21□□□□□ -0.94
PTCH1-217ENST00000548420 SRSF3P84103 164 aaKnown RBP9.2□□□□□ -0.94
PTCH1-217ENST00000548420 SUMO4Q6EEV6 95 aa9.2□□□□□ -0.94
PTCH1-217ENST00000548420 SCXQ7RTU7 201 aa9.2□□□□□ -0.94
PTCH1-217ENST00000548420 DAZ4Q86SG3 579 aaKnown RBP9.2□□□□□ -0.94
PTCH1-217ENST00000548420 DNAJC30Q96LL9 226 aa9.2□□□□□ -0.94
PTCH1-217ENST00000548420 CHCHD7Q9BUK0 85 aa9.2□□□□□ -0.94
PTCH1-217ENST00000548420 DPH3P1Q9H4G8 78 aa9.2□□□□□ -0.94
PTCH1-217ENST00000548420 DAZ3Q9NR90 486 aaKnown RBP9.2□□□□□ -0.94
PTCH1-217ENST00000548420 OSTCQ9NRP0 149 aa9.2□□□□□ -0.94
PTCH1-217ENST00000548420 FAM231BA6NCW3 169 aa9.19□□□□□ -0.94
PTCH1-217ENST00000548420 H7C1H1 209 aa9.19□□□□□ -0.94
PTCH1-217ENST00000548420 TMEM241Q24JQ0 296 aa9.19□□□□□ -0.94
PTCH1-217ENST00000548420 NTM-AS1Q6ZSK4 140 aa9.19□□□□□ -0.94
PTCH1-217ENST00000548420 NTN5Q8WTR8 489 aaPredicted RBP9.19□□□□□ -0.94
PTCH1-217ENST00000548420 FSIP2Q5CZC0 6907 aa9.19□□□□□ -0.94
PTCH1-217ENST00000548420 PEA15Q15121 130 aa9.18□□□□□ -0.94
PTCH1-217ENST00000548420 TWIST1Q15672 202 aa9.18□□□□□ -0.94
PTCH1-217ENST00000548420 TMEM97Q5BJF2 176 aa9.18□□□□□ -0.94
PTCH1-217ENST00000548420 TSKUQ8WUA8 353 aa9.18□□□□□ -0.94
PTCH1-217ENST00000548420 GFRA4Q9GZZ7 299 aa9.18□□□□□ -0.94
PTCH1-217ENST00000548420 TRAV8-3A0A0A6YYJ7 113 aa9.17□□□□□ -0.94
PTCH1-217ENST00000548420 MGPP08493 103 aa9.17□□□□□ -0.94
PTCH1-217ENST00000548420 RPL23P62829 140 aaKnown RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms