RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 PTH2Q96A98 100 aa11.63□□□□□ -0.55
SS18-211ENST00000578954 C16orf74Q96GX8 76 aa11.63□□□□□ -0.55
SS18-211ENST00000578954 OVOL2Q9BRP0 275 aa11.63□□□□□ -0.55
SS18-211ENST00000578954 TRBV24-1A0A075B6N3 115 aa11.62□□□□□ -0.55
SS18-211ENST00000578954 HTN1P15515 57 aa11.62□□□□□ -0.55
SS18-211ENST00000578954 DEFB121Q5J5C9 76 aa11.62□□□□□ -0.55
SS18-211ENST00000578954 SBSPONQ8IVN8 264 aa11.62□□□□□ -0.55
SS18-211ENST00000578954 OR11H2Q8NH07 326 aa11.62□□□□□ -0.55
SS18-211ENST00000578954 MRAPQ8TCY5 172 aa11.62□□□□□ -0.55
SS18-211ENST00000578954 BTF3L4Q96K17 158 aa11.62□□□□□ -0.55
SS18-211ENST00000578954 PGLYRP4Q96LB8 373 aa11.62□□□□□ -0.55
SS18-211ENST00000578954 TM2D3Q9BRN9 247 aa11.62□□□□□ -0.55
SS18-211ENST00000578954 SPXQ9BT56 116 aa11.62□□□□□ -0.55
SS18-211ENST00000578954 URGCP-MRPS24S4R325 110 aa11.62□□□□□ -0.55
SS18-211ENST00000578954 MIFP14174 115 aa11.61□□□□□ -0.55
SS18-211ENST00000578954 ATP5L2Q7Z4Y8 100 aa11.61□□□□□ -0.55
SS18-211ENST00000578954 OR10AG1Q8NH19 301 aa11.61□□□□□ -0.55
SS18-211ENST00000578954 GSN-AS1Q9NRJ2 163 aa11.61□□□□□ -0.55
SS18-211ENST00000578954 MUC4Q99102 2169 aa11.6□□□□□ -0.55
SS18-211ENST00000578954 A0A1B0GUT8 65 aa11.6□□□□□ -0.55
SS18-211ENST00000578954 A0A1B0GXF2 115 aa11.6□□□□□ -0.55
SS18-211ENST00000578954 CACNG7P62955 275 aa11.6□□□□□ -0.55
SS18-211ENST00000578954 DAZ2Q13117 558 aaKnown RBP11.6□□□□□ -0.55
SS18-211ENST00000578954 PIK3CD-AS1Q5SR53 167 aa11.6□□□□□ -0.55
SS18-211ENST00000578954 Q8NAQ8 132 aa11.6□□□□□ -0.55
SS18-211ENST00000578954 ZFP82Q8N141 532 aa11.59□□□□□ -0.55
SS18-211ENST00000578954 B9D2Q9BPU9 175 aa11.59□□□□□ -0.55
SS18-211ENST00000578954 SPATA25Q9BR10 227 aa11.59□□□□□ -0.55
SS18-211ENST00000578954 NDUFAF3Q9BU61 184 aa11.59□□□□□ -0.55
SS18-211ENST00000578954 TPPP3Q9BW30 176 aa11.59□□□□□ -0.55
SS18-211ENST00000578954 PHLDA3Q9Y5J5 127 aa11.59□□□□□ -0.55
SS18-211ENST00000578954 IGHV4-28A0A0C4DH34 117 aa11.58□□□□□ -0.56
SS18-211ENST00000578954 A0A1B0GW15 77 aa11.58□□□□□ -0.56
SS18-211ENST00000578954 SNURFLB1AK76 121 aa11.58□□□□□ -0.56
SS18-211ENST00000578954 M0R2P5 195 aa11.58□□□□□ -0.56
SS18-211ENST00000578954 RIGQ13278 110 aa11.58□□□□□ -0.56
SS18-211ENST00000578954 RASL11AQ6T310 242 aa11.58□□□□□ -0.56
SS18-211ENST00000578954 GATD1Q8NB37 220 aa11.58□□□□□ -0.56
SS18-211ENST00000578954 BORCS7Q96B45 105 aa11.58□□□□□ -0.56
SS18-211ENST00000578954 RETNQ9HD89 108 aa11.58□□□□□ -0.56
SS18-211ENST00000578954 TGIF2-C20orf24A0A0A6YYL0 155 aa11.57□□□□□ -0.56
SS18-211ENST00000578954 SPINK4O60575 86 aa11.57□□□□□ -0.56
SS18-211ENST00000578954 NTF3P20783 257 aa11.57□□□□□ -0.56
SS18-211ENST00000578954 LGALS9BQ3B8N2 356 aa11.57□□□□□ -0.56
SS18-211ENST00000578954 SPANXN1Q5VSR9 72 aa11.57□□□□□ -0.56
SS18-211ENST00000578954 TIMM8BQ9Y5J9 83 aaPredicted RBP11.57□□□□□ -0.56
SS18-211ENST00000578954 NBEAL2Q6ZNJ1 2754 aa11.56□□□□□ -0.56
SS18-211ENST00000578954 MUC21A0A0G2JKD1 596 aa11.56□□□□□ -0.56
SS18-211ENST00000578954 MUC21A0A140T8X8 626 aa11.56□□□□□ -0.56
SS18-211ENST00000578954 COLCA2A8K830 154 aa11.56□□□□□ -0.56
SS18-211ENST00000578954 HBBP68871 147 aa11.56□□□□□ -0.56
SS18-211ENST00000578954 DEFA6Q01524 100 aa11.56□□□□□ -0.56
SS18-211ENST00000578954 DMRTA1Q5VZB9 504 aa11.56□□□□□ -0.56
SS18-211ENST00000578954 MRPL54Q6P161 138 aaKnown RBP11.56□□□□□ -0.56
SS18-211ENST00000578954 SYT8Q8NBV8 401 aa11.56□□□□□ -0.56
SS18-211ENST00000578954 RASL10AQ92737 203 aa11.56□□□□□ -0.56
SS18-211ENST00000578954 S100A8P05109 93 aa11.55□□□□□ -0.56
SS18-211ENST00000578954 COX19Q49B96 90 aa11.55□□□□□ -0.56
SS18-211ENST00000578954 LINC00612Q8N6U2 182 aa11.55□□□□□ -0.56
SS18-211ENST00000578954 FAM210BQ96KR6 192 aa11.55□□□□□ -0.56
SS18-211ENST00000578954 C11orf68Q9H3H3 251 aaKnown RBP11.55□□□□□ -0.56
SS18-211ENST00000578954 NOP10Q9NPE3 64 aaKnown RBP11.55□□□□□ -0.56
SS18-211ENST00000578954 MSRB1Q9NZV6 116 aa11.55□□□□□ -0.56
SS18-211ENST00000578954 M0R381 172 aa11.54□□□□□ -0.56
SS18-211ENST00000578954 TWIST1Q15672 202 aa11.54□□□□□ -0.56
SS18-211ENST00000578954 ZNF876PQ49A33 203 aa11.54□□□□□ -0.56
SS18-211ENST00000578954 DNAH9Q9NYC9 4486 aa11.53□□□□□ -0.56
SS18-211ENST00000578954 LYRM9A8MSI8 78 aa11.53□□□□□ -0.56
SS18-211ENST00000578954 TRGC1P0CF51 173 aa11.53□□□□□ -0.56
SS18-211ENST00000578954 C18orf15Q96N68 181 aa11.53□□□□□ -0.56
SS18-211ENST00000578954 AP1S3Q96PC3 154 aa11.53□□□□□ -0.56
SS18-211ENST00000578954 MRPL16Q9NX20 251 aaKnown RBP11.53□□□□□ -0.56
SS18-211ENST00000578954 TMEM136Q6ZRR5 245 aa11.52□□□□□ -0.57
SS18-211ENST00000578954 Q6ZTI0 123 aa11.52□□□□□ -0.57
SS18-211ENST00000578954 GNB1LQ9BYB4 327 aa11.52□□□□□ -0.57
SS18-211ENST00000578954 TMEM191AQ9H0A3 160 aa11.52□□□□□ -0.57
SS18-211ENST00000578954 DKK2Q9UBU2 259 aa11.52□□□□□ -0.57
SS18-211ENST00000578954 HUWE1Q7Z6Z7 4374 aaKnown RBP11.52□□□□□ -0.57
SS18-211ENST00000578954 TRGV1A0A0A0MS02 117 aa11.51□□□□□ -0.57
SS18-211ENST00000578954 TEX48A0A1B0GUV7 120 aa11.51□□□□□ -0.57
SS18-211ENST00000578954 A8MWV9 139 aa11.51□□□□□ -0.57
SS18-211ENST00000578954 CAMPP49913 170 aa11.51□□□□□ -0.57
SS18-211ENST00000578954 ZMAT4Q9H898 229 aa11.51□□□□□ -0.57
SS18-211ENST00000578954 KIF25-AS1Q9Y6Z4 181 aa11.51□□□□□ -0.57
SS18-211ENST00000578954 MEGF8Q7Z7M0 2845 aa11.51□□□□□ -0.57
SS18-211ENST00000578954 TENM3Q9P273 2699 aa11.51□□□□□ -0.57
SS18-211ENST00000578954 RS1O15537 224 aa11.5□□□□□ -0.57
SS18-211ENST00000578954 HLA-DQA1P01909 254 aa11.5□□□□□ -0.57
SS18-211ENST00000578954 MT-ND6P03923 174 aa11.5□□□□□ -0.57
SS18-211ENST00000578954 RAB5AP20339 215 aa11.5□□□□□ -0.57
SS18-211ENST00000578954 EVI2AP22794 236 aa11.5□□□□□ -0.57
SS18-211ENST00000578954 EMP1P54849 157 aa11.5□□□□□ -0.57
SS18-211ENST00000578954 SSTP61278 116 aa11.5□□□□□ -0.57
SS18-211ENST00000578954 FAM222AQ5U5X8 452 aa11.5□□□□□ -0.57
SS18-211ENST00000578954 DEFB4AO15263 64 aa11.49□□□□□ -0.57
SS18-211ENST00000578954 CRYGDP07320 174 aa11.49□□□□□ -0.57
SS18-211ENST00000578954 NHLRC4P0CG21 123 aaPredicted RBP11.49□□□□□ -0.57
SS18-211ENST00000578954 LINC00315P59091 139 aa11.49□□□□□ -0.57
SS18-211ENST00000578954 UFSP1Q6NVU6 142 aa11.49□□□□□ -0.57
SS18-211ENST00000578954 SMIM15Q7Z3B0 74 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 133 ms