RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 CHCHD5Q9BSY4 110 aa7□□□□□ -1.29
HDAC6-233ENST00000489352 RBM38Q9H0Z9 239 aaKnown RBP7□□□□□ -1.29
HDAC6-233ENST00000489352 PARLQ9H300 379 aa7□□□□□ -1.29
HDAC6-233ENST00000489352 HPGDSO60760 199 aa6.99□□□□□ -1.29
HDAC6-233ENST00000489352 TSPAN13O95857 204 aa6.99□□□□□ -1.29
HDAC6-233ENST00000489352 MT-ND6P03923 174 aa6.99□□□□□ -1.29
HDAC6-233ENST00000489352 LINC00269Q8N2A0 174 aa6.99□□□□□ -1.29
HDAC6-233ENST00000489352 C15orf40Q8WUR7 153 aa6.99□□□□□ -1.29
HDAC6-233ENST00000489352 SSSCA1O60232 199 aa6.98□□□□□ -1.29
HDAC6-233ENST00000489352 NBEAP1P0C6P0 100 aa6.98□□□□□ -1.29
HDAC6-233ENST00000489352 TGFBR1P36897 503 aa6.98□□□□□ -1.29
HDAC6-233ENST00000489352 MIC13Q5XKP0 118 aa6.98□□□□□ -1.29
HDAC6-233ENST00000489352 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.98□□□□□ -1.29
HDAC6-233ENST00000489352 FUNDC2Q9BWH2 189 aa6.98□□□□□ -1.29
HDAC6-233ENST00000489352 SCP2D1Q9UJQ7 156 aa6.98□□□□□ -1.29
HDAC6-233ENST00000489352 PKIGQ9Y2B9 76 aa6.98□□□□□ -1.29
HDAC6-233ENST00000489352 TRBV6-8A0A0A6YYG3 113 aa6.97□□□□□ -1.29
HDAC6-233ENST00000489352 AKAIN1P0CW23 69 aa6.97□□□□□ -1.29
HDAC6-233ENST00000489352 RPL13AP40429 203 aaKnown RBP6.97□□□□□ -1.29
HDAC6-233ENST00000489352 RPL36AP83881 106 aaKnown RBP6.97□□□□□ -1.29
HDAC6-233ENST00000489352 CNPY1Q3B7I2 92 aa6.97□□□□□ -1.29
HDAC6-233ENST00000489352 KRTAP26-1Q6PEX3 210 aa6.97□□□□□ -1.29
HDAC6-233ENST00000489352 NRARPQ7Z6K4 114 aa6.97□□□□□ -1.29
HDAC6-233ENST00000489352 RPL36ALQ969Q0 106 aaKnown RBP6.97□□□□□ -1.29
HDAC6-233ENST00000489352 PTH2Q96A98 100 aa6.97□□□□□ -1.29
HDAC6-233ENST00000489352 GGACTQ9BVM4 153 aa6.97□□□□□ -1.29
HDAC6-233ENST00000489352 A0A096LNI7 61 aa6.96□□□□□ -1.3
HDAC6-233ENST00000489352 F6UZH7 168 aa6.96□□□□□ -1.3
HDAC6-233ENST00000489352 H3BMQ9 156 aa6.96□□□□□ -1.3
HDAC6-233ENST00000489352 RAB5CP51148 216 aa6.96□□□□□ -1.3
HDAC6-233ENST00000489352 S100A10P60903 97 aa6.96□□□□□ -1.3
HDAC6-233ENST00000489352 CFAP161Q6P656 301 aa6.96□□□□□ -1.3
HDAC6-233ENST00000489352 SMIM8Q96KF7 97 aa6.96□□□□□ -1.3
HDAC6-233ENST00000489352 PRR34Q9NV39 138 aa6.96□□□□□ -1.3
HDAC6-233ENST00000489352 MUC17Q685J3 4493 aa6.95□□□□□ -1.3
HDAC6-233ENST00000489352 TSC22D2O75157 780 aa6.95□□□□□ -1.3
HDAC6-233ENST00000489352 PTTG1O95997 202 aa6.95□□□□□ -1.3
HDAC6-233ENST00000489352 GZMBP10144 247 aa6.95□□□□□ -1.3
HDAC6-233ENST00000489352 CRYGAP11844 174 aa6.95□□□□□ -1.3
HDAC6-233ENST00000489352 LSM3P62310 102 aaKnown RBP6.95□□□□□ -1.3
HDAC6-233ENST00000489352 SSBP1Q04837 148 aaKnown RBP6.95□□□□□ -1.3
HDAC6-233ENST00000489352 CTF1Q16619 201 aa6.95□□□□□ -1.3
HDAC6-233ENST00000489352 C1orf137Q5JT78 98 aa6.95□□□□□ -1.3
HDAC6-233ENST00000489352 MZT2AQ6P582 158 aa6.95□□□□□ -1.3
HDAC6-233ENST00000489352 TMEM14EPQ6UXP3 125 aa6.95□□□□□ -1.3
HDAC6-233ENST00000489352 C9orf85Q96MD7 179 aa6.95□□□□□ -1.3
HDAC6-233ENST00000489352 NMES1Q9C002 83 aa6.95□□□□□ -1.3
HDAC6-233ENST00000489352 NAA50Q9GZZ1 169 aaKnown RBP6.95□□□□□ -1.3
HDAC6-233ENST00000489352 TREM1Q9NP99 234 aa6.95□□□□□ -1.3
HDAC6-233ENST00000489352 EXTL2Q9UBQ6 330 aa6.95□□□□□ -1.3
HDAC6-233ENST00000489352 TRAV8-4A0A0B4J246 113 aa6.94□□□□□ -1.3
HDAC6-233ENST00000489352 RHODO00212 210 aa6.94□□□□□ -1.3
HDAC6-233ENST00000489352 P01737 135 aa6.94□□□□□ -1.3
HDAC6-233ENST00000489352 RANP62826 216 aaKnown RBP6.94□□□□□ -1.3
HDAC6-233ENST00000489352 FAM74A4Q5TZK3 123 aa6.94□□□□□ -1.3
HDAC6-233ENST00000489352 ARL6IP6Q8N6S5 226 aa6.94□□□□□ -1.3
HDAC6-233ENST00000489352 TMED6Q8WW62 240 aa6.94□□□□□ -1.3
HDAC6-233ENST00000489352 MCUBQ9NWR8 336 aa6.94□□□□□ -1.3
HDAC6-233ENST00000489352 TRBV7-3A0A075B6L6 115 aa6.93□□□□□ -1.3
HDAC6-233ENST00000489352 S100A4P26447 101 aaKnown RBP6.93□□□□□ -1.3
HDAC6-233ENST00000489352 VBP1P61758 197 aa6.93□□□□□ -1.3
HDAC6-233ENST00000489352 ID3Q02535 119 aa6.93□□□□□ -1.3
HDAC6-233ENST00000489352 REG3AQ06141 175 aa6.93□□□□□ -1.3
HDAC6-233ENST00000489352 SUN5Q8TC36 379 aa6.93□□□□□ -1.3
HDAC6-233ENST00000489352 MLST8Q9BVC4 326 aa6.93□□□□□ -1.3
HDAC6-233ENST00000489352 UBE2D3P61077 147 aa6.92□□□□□ -1.3
HDAC6-233ENST00000489352 NCS1P62166 190 aa6.92□□□□□ -1.3
HDAC6-233ENST00000489352 UBE2D2P62837 147 aa6.92□□□□□ -1.3
HDAC6-233ENST00000489352 RBX1P62877 108 aa6.92□□□□□ -1.3
HDAC6-233ENST00000489352 SPCS2Q15005 226 aa6.92□□□□□ -1.3
HDAC6-233ENST00000489352 TMEM128Q5BJH2 165 aa6.92□□□□□ -1.3
HDAC6-233ENST00000489352 HYLS1Q96M11 299 aa6.92□□□□□ -1.3
HDAC6-233ENST00000489352 SLC25A2Q9BXI2 301 aa6.92□□□□□ -1.3
HDAC6-233ENST00000489352 JPT2Q9H910 190 aa6.92□□□□□ -1.3
HDAC6-233ENST00000489352 TRBV10-1A0A0K0K1A3 114 aa6.91□□□□□ -1.3
HDAC6-233ENST00000489352 FAM24AA6NFZ4 105 aa6.91□□□□□ -1.3
HDAC6-233ENST00000489352 H0Y9J4 135 aa6.91□□□□□ -1.3
HDAC6-233ENST00000489352 SCGB1D2O95969 90 aa6.91□□□□□ -1.3
HDAC6-233ENST00000489352 RPL29P47914 159 aaKnown RBP6.91□□□□□ -1.3
HDAC6-233ENST00000489352 RAB2AP61019 212 aa6.91□□□□□ -1.3
HDAC6-233ENST00000489352 HIGD2BQ4VC39 106 aa6.91□□□□□ -1.3
HDAC6-233ENST00000489352 PIK3CD-AS1Q5SR53 167 aa6.91□□□□□ -1.3
HDAC6-233ENST00000489352 CMTM2Q8TAZ6 248 aa6.91□□□□□ -1.3
HDAC6-233ENST00000489352 PHYHIPLQ96FC7 376 aa6.91□□□□□ -1.3
HDAC6-233ENST00000489352 EIF5AP63241 154 aaKnown RBP6.9□□□□□ -1.3
HDAC6-233ENST00000489352 MRPS10P82664 201 aaKnown RBP6.9□□□□□ -1.3
HDAC6-233ENST00000489352 BAXQ07812 192 aa6.9□□□□□ -1.3
HDAC6-233ENST00000489352 ARL16Q0P5N6 197 aa6.9□□□□□ -1.3
HDAC6-233ENST00000489352 GAGE6Q13070 117 aa6.9□□□□□ -1.3
HDAC6-233ENST00000489352 AP3S1Q92572 193 aa6.9□□□□□ -1.3
HDAC6-233ENST00000489352 DIRAS2Q96HU8 199 aa6.9□□□□□ -1.3
HDAC6-233ENST00000489352 NDFIP1Q9BT67 221 aa6.9□□□□□ -1.3
HDAC6-233ENST00000489352 GFRA4Q9GZZ7 299 aa6.9□□□□□ -1.3
HDAC6-233ENST00000489352 TRAV6A0A075B6T7 132 aa6.89□□□□□ -1.31
HDAC6-233ENST00000489352 RNASE3P12724 160 aaKnown RBP6.89□□□□□ -1.31
HDAC6-233ENST00000489352 TAS2R30P59541 319 aa6.89□□□□□ -1.31
HDAC6-233ENST00000489352 CYCSP99999 105 aaKnown RBP6.89□□□□□ -1.31
HDAC6-233ENST00000489352 FAM74A1Q5RGS3 127 aa6.89□□□□□ -1.31
HDAC6-233ENST00000489352 UFSP1Q6NVU6 142 aa6.89□□□□□ -1.31
HDAC6-233ENST00000489352 LINC00299Q6ZSB3 139 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 283 ms