RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C YPS7Q06325 596 aa6.35□□□□□ -1.39
DEF1YKL054C RPN2P32565 945 aaKnown RBP6.35□□□□□ -1.39
DEF1YKL054C LAS1P36146 502 aaPredicted RBP6.35□□□□□ -1.39
DEF1YKL054C RTS1P38903 757 aa6.35□□□□□ -1.39
DEF1YKL054C UME6P39001 836 aa6.35□□□□□ -1.39
DEF1YKL054C YJR061WP40355 935 aa6.35□□□□□ -1.39
DEF1YKL054C ERB1Q04660 807 aaKnown RBP6.35□□□□□ -1.39
DEF1YKL054C CTI6Q08923 506 aa6.35□□□□□ -1.39
DEF1YKL054C BIK1P11709 440 aa6.34□□□□□ -1.39
DEF1YKL054C PDC5P16467 563 aaKnown RBP6.34□□□□□ -1.39
DEF1YKL054C PRP22P24384 1145 aaKnown RBP6.34□□□□□ -1.39
DEF1YKL054C FLR1P38124 548 aa6.34□□□□□ -1.39
DEF1YKL054C ATG14P38270 344 aa6.34□□□□□ -1.39
DEF1YKL054C PSD1P39006 500 aa6.34□□□□□ -1.39
DEF1YKL054C NEO1P40527 1151 aa6.34□□□□□ -1.39
DEF1YKL054C HST1P53685 503 aa6.34□□□□□ -1.39
DEF1YKL054C YNR061CP53747 219 aa6.34□□□□□ -1.39
DEF1YKL054C CRR1Q05790 422 aa6.34□□□□□ -1.39
DEF1YKL054C YLL032CQ07834 825 aaKnown RBP RIP-Chip data6.34□□□□□ -1.39not detected
DEF1YKL054C APC5Q08683 685 aa6.34□□□□□ -1.39
DEF1YKL054C ALG6Q12001 544 aaKnown RBP6.34□□□□□ -1.39
DEF1YKL054C GET3Q12154 354 aaKnown RBP6.34□□□□□ -1.39
DEF1YKL054C ZRT2Q12436 422 aa6.34□□□□□ -1.39
DEF1YKL054C CHD1P32657 1468 aa6.34□□□□□ -1.39
DEF1YKL054C DGR2P32330 852 aa6.34□□□□□ -1.39
DEF1YKL054C SIF2P38262 535 aa6.34□□□□□ -1.39
DEF1YKL054C YEL057CP39983 233 aa6.34□□□□□ -1.39
DEF1YKL054C HFM1P51979 1187 aa6.34□□□□□ -1.39
DEF1YKL054C DSD1P53095 428 aa6.34□□□□□ -1.39
DEF1YKL054C AIM32Q04689 311 aa6.34□□□□□ -1.39
DEF1YKL054C RPS17AP02407 136 aaKnown RBP6.33□□□□□ -1.4
DEF1YKL054C CAF20P12962 161 aaKnown RBP6.33□□□□□ -1.4
DEF1YKL054C RPS17BP14127 136 aaKnown RBP6.33□□□□□ -1.4
DEF1YKL054C CAP1P28495 268 aaKnown RBP6.33□□□□□ -1.4
DEF1YKL054C TEF4P36008 412 aaKnown RBP6.33□□□□□ -1.4
DEF1YKL054C FET5P43561 622 aa6.33□□□□□ -1.4
DEF1YKL054C BST1P43571 1029 aa6.33□□□□□ -1.4
DEF1YKL054C TOF1P53840 1238 aa6.33□□□□□ -1.4
DEF1YKL054C GTB1Q04924 702 aa6.33□□□□□ -1.4
DEF1YKL054C TRI1Q05024 226 aa6.33□□□□□ -1.4
DEF1YKL054C RSF1Q05043 376 aa6.33□□□□□ -1.4
DEF1YKL054C STP4Q07351 490 aa6.33□□□□□ -1.4
DEF1YKL054C TPK1P06244 397 aa6.33□□□□□ -1.4
DEF1YKL054C RPB2P08518 1224 aaKnown RBP6.33□□□□□ -1.4
DEF1YKL054C PET123P17558 318 aa6.33□□□□□ -1.4
DEF1YKL054C SNF5P18480 905 aa6.33□□□□□ -1.4
DEF1YKL054C RIT1P23796 513 aa6.33□□□□□ -1.4
DEF1YKL054C MGM1P32266 881 aa6.33□□□□□ -1.4
DEF1YKL054C TAF5P38129 798 aa6.33□□□□□ -1.4
DEF1YKL054C SET5P38890 526 aaKnown RBP6.33□□□□□ -1.4
DEF1YKL054C LYS9P38999 446 aa6.33□□□□□ -1.4
DEF1YKL054C YIL161WP40449 235 aaKnown RBP6.33□□□□□ -1.4
DEF1YKL054C THI6P41835 540 aa6.33□□□□□ -1.4
DEF1YKL054C ARC1P46672 376 aaKnown RBP6.33□□□□□ -1.4
DEF1YKL054C YNR068CP53754 272 aa6.33□□□□□ -1.4
DEF1YKL054C BNI5P53890 448 aaKnown RBP6.33□□□□□ -1.4
DEF1YKL054C AAD4Q07747 329 aa6.33□□□□□ -1.4
DEF1YKL054C MLH2Q07980 695 aa6.33□□□□□ -1.4
DEF1YKL054C NOT3P06102 836 aaKnown RBP6.32□□□□□ -1.4
DEF1YKL054C IME1P21190 360 aa6.32□□□□□ -1.4
DEF1YKL054C RAD51P25454 400 aa6.32□□□□□ -1.4
DEF1YKL054C MRP20P32387 263 aa6.32□□□□□ -1.4
DEF1YKL054C STB6P36085 766 aa6.32□□□□□ -1.4
DEF1YKL054C SNF12P53628 566 aa6.32□□□□□ -1.4
DEF1YKL054C JJJ1P53863 590 aa6.32□□□□□ -1.4
DEF1YKL054C YDL073WQ07454 984 aa6.32□□□□□ -1.4
DEF1YKL054C PUF3Q07807 879 aaKnown RBP RIP-Chip data6.32□□□□□ -1.4not detected
DEF1YKL054C TUB2P02557 457 aaKnown RBP6.31□□□□□ -1.4
DEF1YKL054C KAR3P17119 729 aa6.31□□□□□ -1.4
DEF1YKL054C YCK1P23291 538 aa6.31□□□□□ -1.4
DEF1YKL054C TRK2P28584 889 aa6.31□□□□□ -1.4
DEF1YKL054C SWC3P31376 625 aa6.31□□□□□ -1.4
DEF1YKL054C GYP6P32806 458 aa6.31□□□□□ -1.4
DEF1YKL054C VMA13P41807 478 aaKnown RBP6.31□□□□□ -1.4
DEF1YKL054C SHE10P53075 577 aa6.31□□□□□ -1.4
DEF1YKL054C RPT6Q01939 405 aaKnown RBP6.31□□□□□ -1.4
DEF1YKL054C MRN1Q08925 612 aaKnown RBP RIP-Chip data6.31□□□□□ -1.4not detected
DEF1YKL054C CFT2Q12102 859 aaPredicted RBP6.31□□□□□ -1.4
DEF1YKL054C PSY3Q12318 242 aa6.31□□□□□ -1.4
DEF1YKL054C SKM1Q12469 655 aa6.31□□□□□ -1.4
DEF1YKL054C YMR084WA2P2R3 262 aa6.31□□□□□ -1.4
DEF1YKL054C DBP3P20447 523 aaKnown RBP6.31□□□□□ -1.4
DEF1YKL054C MAC1P35192 417 aa6.31□□□□□ -1.4
DEF1YKL054C FLC2P39719 783 aa6.31□□□□□ -1.4
DEF1YKL054C BUD27P43573 796 aaKnown RBP RIP-Chip data6.31□□□□□ -1.4not detected
DEF1YKL054C ACS1Q01574 713 aa6.31□□□□□ -1.4
DEF1YKL054C SEC53P07283 254 aaKnown RBP6.3□□□□□ -1.4
DEF1YKL054C SUI2P20459 304 aaKnown RBP6.3□□□□□ -1.4
DEF1YKL054C CLB1P24868 471 aa6.3□□□□□ -1.4
DEF1YKL054C URA7P28274 579 aaKnown RBP6.3□□□□□ -1.4
DEF1YKL054C PCH2P38126 564 aa6.3□□□□□ -1.4
DEF1YKL054C UBP13P38187 747 aa6.3□□□□□ -1.4
DEF1YKL054C MIP6P38760 659 aaKnown RBP6.3□□□□□ -1.4
DEF1YKL054C YHR131CP38835 850 aa6.3□□□□□ -1.4
DEF1YKL054C SHR5P41912 237 aa6.3□□□□□ -1.4
DEF1YKL054C RSB1Q08417 382 aa6.3□□□□□ -1.4
DEF1YKL054C APL4Q12028 832 aa6.3□□□□□ -1.4
DEF1YKL054C OCA4P25366 362 aa6.3□□□□□ -1.4
DEF1YKL054C SPB1P25582 841 aaPredicted RBP6.3□□□□□ -1.4
DEF1YKL054C IMG2P25642 146 aaPredicted RBP6.3□□□□□ -1.4
Retrieved 100 of 5,963 RNA–protein pairs in 36.8 ms