RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W DOM34P33309 386 aa3.37□□□□□ -1.87
USE1YGL098W NTH2P35172 780 aa3.37□□□□□ -1.87
USE1YGL098W HES1P35843 434 aa3.37□□□□□ -1.87
USE1YGL098W YBR225WP38321 900 aa3.37□□□□□ -1.87
USE1YGL098W RFC3P38629 340 aa3.37□□□□□ -1.87
USE1YGL098W BCD1P38772 366 aa3.37□□□□□ -1.87
USE1YGL098W LSM12P38828 187 aaKnown RBP3.37□□□□□ -1.87
USE1YGL098W MTG2P38860 518 aa3.37□□□□□ -1.87
USE1YGL098W CCT6P39079 546 aa3.37□□□□□ -1.87
USE1YGL098W AST2P39945 430 aaKnown RBP3.37□□□□□ -1.87
USE1YGL098W ALD5P40047 520 aaKnown RBP3.37□□□□□ -1.87
USE1YGL098W SMX2P40204 77 aaKnown RBP3.37□□□□□ -1.87
USE1YGL098W YNL320WP42840 284 aa3.37□□□□□ -1.87
USE1YGL098W YFH7P43591 353 aa3.37□□□□□ -1.87
USE1YGL098W FAR7P43592 221 aa3.37□□□□□ -1.87
USE1YGL098W NMD5P46970 1048 aa3.37□□□□□ -1.87
USE1YGL098W IMD3P50095 523 aaKnown RBP3.37□□□□□ -1.87
USE1YGL098W ATP22P50273 684 aaPredicted RBP3.37□□□□□ -1.87
USE1YGL098W PAN2P53010 1115 aaPredicted RBP3.37□□□□□ -1.87
USE1YGL098W ATG1P53104 897 aa3.37□□□□□ -1.87
USE1YGL098W RTS3P53289 263 aa3.37□□□□□ -1.87
USE1YGL098W TOF1P53840 1238 aa3.37□□□□□ -1.87
USE1YGL098W RTC4P53850 401 aa3.37□□□□□ -1.87
USE1YGL098W YNL040WP53960 456 aaPredicted RBP3.37□□□□□ -1.87
USE1YGL098W RPL6AQ02326 176 aaKnown RBP3.37□□□□□ -1.87
USE1YGL098W ECM23Q02710 187 aa3.37□□□□□ -1.87
USE1YGL098W SNZ1Q03148 297 aa3.37□□□□□ -1.87
USE1YGL098W ABZ2Q03266 374 aa3.37□□□□□ -1.87
USE1YGL098W EBS1Q03466 884 aaKnown RBP3.37□□□□□ -1.87
USE1YGL098W CLU1Q03690 1277 aaKnown RBP3.37□□□□□ -1.87
USE1YGL098W ACL4Q03771 387 aa3.37□□□□□ -1.87
USE1YGL098W YDR239CQ03780 787 aa3.37□□□□□ -1.87
USE1YGL098W NSE3Q05541 303 aa3.37□□□□□ -1.87
USE1YGL098W JIP5Q06214 492 aaPredicted RBP3.37□□□□□ -1.87
USE1YGL098W RSC3Q06639 885 aa3.37□□□□□ -1.87
USE1YGL098W CLP1Q08685 445 aaPredicted RBP3.37□□□□□ -1.87
USE1YGL098W TRM8Q12009 286 aa3.37□□□□□ -1.87
USE1YGL098W BAG7Q12128 409 aa3.37□□□□□ -1.87
USE1YGL098W ARP6Q12509 438 aa3.37□□□□□ -1.87
USE1YGL098W ADR1P07248 1323 aa3.37□□□□□ -1.87
USE1YGL098W RPO21P04050 1733 aaKnown RBP3.36□□□□□ -1.87
USE1YGL098W IPP1P00817 287 aaKnown RBP3.36□□□□□ -1.87
USE1YGL098W RAD4P14736 754 aa3.36□□□□□ -1.87
USE1YGL098W PFK2P16862 959 aaKnown RBP RIP-Chip data3.36□□□□□ -1.87not detected
USE1YGL098W DAP2P18962 818 aa3.36□□□□□ -1.87
USE1YGL098W CLN2P20438 545 aa3.36□□□□□ -1.87
USE1YGL098W CBP3P21560 335 aa3.36□□□□□ -1.87
USE1YGL098W CAD1P24813 409 aaKnown RBP3.36□□□□□ -1.87
USE1YGL098W OCA4P25366 362 aa3.36□□□□□ -1.87
USE1YGL098W HEM3P28789 327 aa3.36□□□□□ -1.87
USE1YGL098W PTR2P32901 601 aa3.36□□□□□ -1.87
USE1YGL098W LRG1P35688 1017 aa3.36□□□□□ -1.87
USE1YGL098W NTR2P36118 322 aaPredicted RBP3.36□□□□□ -1.87
USE1YGL098W MET1P36150 593 aa3.36□□□□□ -1.87
USE1YGL098W NAT2P37293 288 aa3.36□□□□□ -1.87
USE1YGL098W UGA2P38067 497 aa3.36□□□□□ -1.87
USE1YGL098W ETR1P38071 380 aa3.36□□□□□ -1.87
USE1YGL098W RFS1P38234 210 aaKnown RBP3.36□□□□□ -1.87
USE1YGL098W SWC5P38326 303 aa3.36□□□□□ -1.87
USE1YGL098W TIF5P38431 405 aaKnown RBP3.36□□□□□ -1.87
USE1YGL098W YHR218WP38899 603 aa3.36□□□□□ -1.87
USE1YGL098W RCY1P39531 840 aa3.36□□□□□ -1.87
USE1YGL098W SSP120P39931 234 aaKnown RBP3.36□□□□□ -1.87
USE1YGL098W AVT6P40074 448 aa3.36□□□□□ -1.87
USE1YGL098W LYS14P40971 790 aa3.36□□□□□ -1.87
USE1YGL098W IRC5P43610 853 aa3.36□□□□□ -1.87
USE1YGL098W EMC2P47133 292 aaKnown RBP3.36□□□□□ -1.87
USE1YGL098W PSP1P50896 841 aaKnown RBP3.36□□□□□ -1.87
USE1YGL098W ACS2P52910 683 aaKnown RBP3.36□□□□□ -1.87
USE1YGL098W MIG2P53035 382 aa3.36□□□□□ -1.87
USE1YGL098W EFM5P53200 248 aaKnown RBP3.36□□□□□ -1.87
USE1YGL098W YGR122WP53272 402 aa3.36□□□□□ -1.87
USE1YGL098W ORC3P54790 616 aa3.36□□□□□ -1.87
USE1YGL098W SLT2Q00772 484 aa3.36□□□□□ -1.87
USE1YGL098W RPT6Q01939 405 aaKnown RBP3.36□□□□□ -1.87
USE1YGL098W RVB1Q03940 463 aaKnown RBP3.36□□□□□ -1.87
USE1YGL098W GPI17Q04080 534 aa3.36□□□□□ -1.87
USE1YGL098W COX20Q04935 205 aa3.36□□□□□ -1.87
USE1YGL098W BCP1Q06338 283 aa3.36□□□□□ -1.87
USE1YGL098W GAS4Q08271 471 aa3.36□□□□□ -1.87
USE1YGL098W SGO1Q08490 590 aa3.36□□□□□ -1.87
USE1YGL098W YOR289WQ12012 251 aaPredicted RBP3.36□□□□□ -1.87
USE1YGL098W ATG29Q12092 213 aa3.36□□□□□ -1.87
USE1YGL098W RTC5Q12108 567 aaKnown RBP3.36□□□□□ -1.87
USE1YGL098W SNU23Q12368 194 aaPredicted RBP3.36□□□□□ -1.87
USE1YGL098W DBP10Q12389 995 aaKnown RBP3.36□□□□□ -1.87
USE1YGL098W NSI1Q12457 570 aa3.36□□□□□ -1.87
USE1YGL098W PGA3Q12746 312 aaKnown RBP3.36□□□□□ -1.87
USE1YGL098W YBL111CQ3E7Y5 667 aa3.36□□□□□ -1.87
USE1YGL098W NBL1Q3E7Y6 73 aa3.36□□□□□ -1.87
USE1YGL098W YPT6Q99260 215 aa3.36□□□□□ -1.87
USE1YGL098W MF(ALPHA)1P01149 165 aa3.35□□□□□ -1.87
USE1YGL098W RPS31P05759 152 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W SIR3P06701 978 aa3.35□□□□□ -1.87
USE1YGL098W PPR1P07272 904 aaPredicted RBP3.35□□□□□ -1.87
USE1YGL098W SWI5P08153 709 aa3.35□□□□□ -1.87
USE1YGL098W SPO16P17122 198 aa3.35□□□□□ -1.87
USE1YGL098W DBP3P20447 523 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W LCB1P25045 558 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W SWI4P25302 1093 aaKnown RBP3.35□□□□□ -1.87
Retrieved 100 of 5,963 RNA–protein pairs in 18.9 ms