RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C YIP4P53093 235 aa2.06□□□□□ -2.08
VPS54YDR027C SPO1P53541 631 aa2.06□□□□□ -2.08
VPS54YDR027C PRS5Q12265 496 aaKnown RBP2.06□□□□□ -2.08
VPS54YDR027C PDR10P51533 1564 aa2.06□□□□□ -2.08
VPS54YDR027C YMR084WA2P2R3 262 aa2.06□□□□□ -2.08
VPS54YDR027C YKU70P32807 602 aa2.06□□□□□ -2.08
VPS54YDR027C COQ6P53318 479 aa2.06□□□□□ -2.08
VPS54YDR027C SCW4P53334 386 aaKnown RBP2.06□□□□□ -2.08
VPS54YDR027C PPN1Q04119 674 aa2.06□□□□□ -2.08
VPS54YDR027C YPL216WQ08964 1102 aa2.06□□□□□ -2.08
VPS54YDR027C TRM3Q07527 1436 aa2.06□□□□□ -2.08
VPS54YDR027C AQY1P0CD91 305 aa2.05□□□□□ -2.08
VPS54YDR027C JHD1P40034 492 aa2.05□□□□□ -2.08
VPS54YDR027C PCI8P40512 444 aa2.05□□□□□ -2.08
VPS54YDR027C MNT3P40549 630 aa2.05□□□□□ -2.08
VPS54YDR027C RCR2Q03446 210 aaKnown RBP2.05□□□□□ -2.08
VPS54YDR027C TY1B-HO13535 1793 aa2.05□□□□□ -2.08
VPS54YDR027C TY1B-DR5P0C2I2 1755 aa2.05□□□□□ -2.08
VPS54YDR027C TY1B-DR6P0C2I3 1755 aa2.05□□□□□ -2.08
VPS54YDR027C TY1B-LR2P0C2I5 1755 aa2.05□□□□□ -2.08
VPS54YDR027C TY1B-LR3P0C2I6 1755 aaKnown RBP2.05□□□□□ -2.08
VPS54YDR027C TY1B-PR1P0C2I9 1755 aaKnown RBP2.05□□□□□ -2.08
VPS54YDR027C TY1B-PR2P0C2J0 1756 aa2.05□□□□□ -2.08
VPS54YDR027C TY1B-PR3P0C2J1 1755 aaKnown RBP2.05□□□□□ -2.08
VPS54YDR027C TY1B-JR1P47098 1755 aa2.05□□□□□ -2.08
VPS54YDR027C TY1B-ML2Q03434 1755 aaKnown RBP2.05□□□□□ -2.08
VPS54YDR027C TY1B-ER1Q03612 1755 aa2.05□□□□□ -2.08
VPS54YDR027C TY1B-ML1Q04711 1755 aaKnown RBP2.05□□□□□ -2.08
VPS54YDR027C TY1B-GR2Q12269 1755 aa2.05□□□□□ -2.08
VPS54YDR027C TY1B-OLQ12273 1755 aa2.05□□□□□ -2.08
VPS54YDR027C TY1B-PLQ12414 1755 aaKnown RBP2.05□□□□□ -2.08
VPS54YDR027C FDC1Q03034 503 aa2.05□□□□□ -2.08
VPS54YDR027C RSC9Q03124 581 aa2.05□□□□□ -2.08
VPS54YDR027C GFD1Q04839 188 aaKnown RBP2.05□□□□□ -2.08
VPS54YDR027C YLR407WQ06070 228 aa2.05□□□□□ -2.08
VPS54YDR027C ARO1P08566 1588 aaKnown RBP2.04□□□□□ -2.08
VPS54YDR027C WHI2P12611 486 aa2.04□□□□□ -2.08
VPS54YDR027C URE2P23202 354 aaKnown RBP2.04□□□□□ -2.08
VPS54YDR027C SSD1P24276 1250 aaKnown RBP RIP-Chip data2.04□□□□□ -2.08not detected
VPS54YDR027C CNE1P27825 502 aa2.04□□□□□ -2.08
VPS54YDR027C EFR3Q03653 782 aaKnown RBP2.04□□□□□ -2.08
VPS54YDR027C FPR4Q06205 392 aaPredicted RBP2.04□□□□□ -2.08
VPS54YDR027C GUD1Q07729 489 aa2.04□□□□□ -2.08
VPS54YDR027C ASK1P35734 292 aa2.04□□□□□ -2.08
VPS54YDR027C BUD6P41697 788 aa2.04□□□□□ -2.08
VPS54YDR027C BUD8P41698 603 aa2.04□□□□□ -2.08
VPS54YDR027C ENT2Q05785 613 aa2.04□□□□□ -2.08
VPS54YDR027C NEW1Q08972 1196 aaKnown RBP2.04□□□□□ -2.08
VPS54YDR027C MRPL7P36519 292 aa2.04□□□□□ -2.08
VPS54YDR027C YNL018CP53976 612 aa2.04□□□□□ -2.08
VPS54YDR027C IDP3P53982 420 aaKnown RBP2.04□□□□□ -2.08
VPS54YDR027C IOC4Q04213 475 aa2.04□□□□□ -2.08
VPS54YDR027C YPS7Q06325 596 aa2.04□□□□□ -2.08
VPS54YDR027C BSP1Q06604 576 aa2.04□□□□□ -2.08
VPS54YDR027C TGS1Q12052 315 aa2.04□□□□□ -2.08
VPS54YDR027C USO1P25386 1790 aa2.03□□□□□ -2.08
VPS54YDR027C IME1P21190 360 aa2.03□□□□□ -2.08
VPS54YDR027C DHR2P36009 735 aaPredicted RBP2.03□□□□□ -2.08
VPS54YDR027C PXL1P36166 706 aa2.03□□□□□ -2.08
VPS54YDR027C YGR054WP53235 642 aaKnown RBP2.03□□□□□ -2.08
VPS54YDR027C BUD17P53727 317 aa2.03□□□□□ -2.08
VPS54YDR027C POB3Q04636 552 aaKnown RBP2.03□□□□□ -2.08
VPS54YDR027C NUM1Q00402 2748 aa2.03□□□□□ -2.08
VPS54YDR027C MMS22Q06164 1454 aa2.03□□□□□ -2.08
VPS54YDR027C LOT5P34234 306 aa2.03□□□□□ -2.09
VPS54YDR027C BRN1P38170 754 aa2.03□□□□□ -2.09
VPS54YDR027C SPP41P38904 1435 aa2.03□□□□□ -2.09
VPS54YDR027C MET13P53128 600 aa2.03□□□□□ -2.09
VPS54YDR027C RNH70P53331 553 aa2.03□□□□□ -2.09
VPS54YDR027C LSC1P53598 329 aaKnown RBP2.03□□□□□ -2.09
VPS54YDR027C TIM50Q02776 476 aa2.03□□□□□ -2.09
VPS54YDR027C CRC1Q12289 327 aa2.03□□□□□ -2.09
VPS54YDR027C SEC3P33332 1336 aaKnown RBP2.02□□□□□ -2.09
VPS54YDR027C YAP1P19880 650 aaKnown RBP2.02□□□□□ -2.09
VPS54YDR027C DUN1P39009 513 aa2.02□□□□□ -2.09
VPS54YDR027C HLR1Q04429 423 aa2.02□□□□□ -2.09
VPS54YDR027C NTG2Q08214 380 aa2.02□□□□□ -2.09
VPS54YDR027C GDB1Q06625 1536 aa2.02□□□□□ -2.09
VPS54YDR027C TY2B-BQ12491 1770 aa2.02□□□□□ -2.09
VPS54YDR027C RPS17AP02407 136 aaKnown RBP2.02□□□□□ -2.09
VPS54YDR027C RPS17BP14127 136 aaKnown RBP2.02□□□□□ -2.09
VPS54YDR027C TDA3P38758 523 aa2.02□□□□□ -2.09
VPS54YDR027C EXO1P39875 702 aa2.02□□□□□ -2.09
VPS54YDR027C OPT1P40897 799 aa2.02□□□□□ -2.09
VPS54YDR027C YFL015CP43578 164 aa2.02□□□□□ -2.09
VPS54YDR027C STP4Q07351 490 aa2.02□□□□□ -2.09
VPS54YDR027C RNR3P21672 869 aaKnown RBP2.01□□□□□ -2.09
VPS54YDR027C GSY2P27472 705 aa2.01□□□□□ -2.09
VPS54YDR027C PRE4P30657 266 aa2.01□□□□□ -2.09
VPS54YDR027C NMD2P38798 1089 aaKnown RBP2.01□□□□□ -2.09
VPS54YDR027C CRG1P38892 291 aaRIP-Chip data2.01□□□□□ -2.09 RIP-Chip
VPS54YDR027C YEL025CP39991 1188 aa2.01□□□□□ -2.09
VPS54YDR027C FTR1P40088 404 aa2.01□□□□□ -2.09
VPS54YDR027C BST1P43571 1029 aa2.01□□□□□ -2.09
VPS54YDR027C TAF4P50105 388 aa2.01□□□□□ -2.09
VPS54YDR027C MAK10Q02197 733 aa2.01□□□□□ -2.09
VPS54YDR027C RDL1Q12305 139 aaKnown RBP2.01□□□□□ -2.09
VPS54YDR027C YPR089WO13585 888 aa2.01□□□□□ -2.09
VPS54YDR027C SWI6P09959 803 aa2.01□□□□□ -2.09
VPS54YDR027C ALG12P53730 551 aa2.01□□□□□ -2.09
Retrieved 100 of 5,963 RNA–protein pairs in 11.3 ms