RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NPL4	YBR170C	HMI1	Q12039	706 aa		4.87	□□□□□ -1.63
NPL4	YBR170C	SNU66	Q12420	587 aa	Predicted RBP	4.87	□□□□□ -1.63
NPL4	YBR170C	SEM1	O94742	89 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	FUM1	P08417	488 aa	Known RBP	4.86	□□□□□ -1.63
NPL4	YBR170C	CDC16	P09798	840 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	CTS1	P29029	562 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	MRPL36	P36531	177 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	RKM3	P38222	552 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	GSM1	P42950	618 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	SGM1	P47166	707 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	YDL183C	P48569	320 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	MDR1	P53258	950 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	RBG2	P53295	368 aa	Known RBP	4.86	□□□□□ -1.63
NPL4	YBR170C	SNO4	Q04902	237 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	VIP1	Q06685	1146 aa	Known RBP	4.86	□□□□□ -1.63
NPL4	YBR170C	HSP33	Q08914	237 aa	Known RBP	4.86	□□□□□ -1.63
NPL4	YBR170C	HSP32	Q08992	237 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	ECM3	Q99252	613 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	MET8	P15807	274 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	CMK1	P27466	446 aa	Known RBP	4.86	□□□□□ -1.63
NPL4	YBR170C	NUP120	P35729	1037 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	SPO1	P53541	631 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	TEX1	P53851	422 aa	Known RBP	4.86	□□□□□ -1.63
NPL4	YBR170C	TDA9	Q04545	1251 aa		4.86	□□□□□ -1.63
NPL4	YBR170C	HRP1	Q99383	534 aa	Known RBP	4.86	□□□□□ -1.63
NPL4	YBR170C	CDC6	P09119	513 aa		4.85	□□□□□ -1.63
NPL4	YBR170C	PCK1	P10963	549 aa		4.85	□□□□□ -1.63
NPL4	YBR170C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.85	□□□□□ -1.63	not detected
NPL4	YBR170C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.85	□□□□□ -1.63	not detected
NPL4	YBR170C	KIN82	P25341	720 aa		4.85	□□□□□ -1.63
NPL4	YBR170C	BLI1	P35727	113 aa		4.85	□□□□□ -1.63
NPL4	YBR170C	UBS1	P38290	277 aa		4.85	□□□□□ -1.63
NPL4	YBR170C	RPP1	P38786	293 aa		4.85	□□□□□ -1.63
NPL4	YBR170C	CRG1	P38892	291 aa	RIP-Chip data	4.85	□□□□□ -1.63	not detected
NPL4	YBR170C	POL31	P46957	487 aa		4.85	□□□□□ -1.63
NPL4	YBR170C	YCG1	Q06680	1035 aa		4.85	□□□□□ -1.63
NPL4	YBR170C	PEX19	Q07418	342 aa		4.85	□□□□□ -1.63
NPL4	YBR170C	TGL5	Q12043	749 aa		4.85	□□□□□ -1.63
NPL4	YBR170C	POM34	Q12445	299 aa		4.85	□□□□□ -1.63
NPL4	YBR170C	RPS9B	P05755	195 aa	Known RBP	4.84	□□□□□ -1.63
NPL4	YBR170C	BIK1	P11709	440 aa		4.84	□□□□□ -1.63
NPL4	YBR170C	EMC1	P25574	760 aa		4.84	□□□□□ -1.63
NPL4	YBR170C	ARP2	P32381	391 aa	Known RBP	4.84	□□□□□ -1.63
NPL4	YBR170C	TEF4	P36008	412 aa	Known RBP	4.84	□□□□□ -1.63
NPL4	YBR170C	FSH1	P38777	243 aa	Known RBP	4.84	□□□□□ -1.63
NPL4	YBR170C	GET2	P40056	285 aa		4.84	□□□□□ -1.63
NPL4	YBR170C	FTR1	P40088	404 aa		4.84	□□□□□ -1.63
NPL4	YBR170C	CAB2	P40506	365 aa		4.84	□□□□□ -1.63
NPL4	YBR170C	BST1	P43571	1029 aa		4.84	□□□□□ -1.63
NPL4	YBR170C	PSP1	P50896	841 aa	Known RBP	4.84	□□□□□ -1.63
NPL4	YBR170C	VPS62	P53285	467 aa		4.84	□□□□□ -1.63
NPL4	YBR170C	MRPS35	P53292	345 aa		4.84	□□□□□ -1.63
NPL4	YBR170C	NRG1	Q03125	231 aa		4.84	□□□□□ -1.63
NPL4	YBR170C	YKU80	Q04437	629 aa		4.84	□□□□□ -1.63
NPL4	YBR170C	YOR352W	Q08816	343 aa		4.84	□□□□□ -1.63
NPL4	YBR170C	GPB1	Q08886	897 aa		4.84	□□□□□ -1.63
NPL4	YBR170C	NPC2	Q12408	173 aa		4.84	□□□□□ -1.63
NPL4	YBR170C	TRM11	Q12463	433 aa		4.84	□□□□□ -1.63
NPL4	YBR170C	RAD16	P31244	790 aa		4.83	□□□□□ -1.64
NPL4	YBR170C	IRC6	P43615	237 aa		4.83	□□□□□ -1.64
NPL4	YBR170C	TIM10	P87108	93 aa		4.83	□□□□□ -1.64
NPL4	YBR170C	GAD1	Q04792	585 aa		4.83	□□□□□ -1.64
NPL4	YBR170C	SCM3	Q12334	223 aa		4.83	□□□□□ -1.64
NPL4	YBR170C	RVB2	Q12464	471 aa	Known RBP	4.83	□□□□□ -1.64
NPL4	YBR170C	PCD1	Q12524	340 aa		4.83	□□□□□ -1.64
NPL4	YBR170C	TUF1	P02992	437 aa	Known RBP	4.83	□□□□□ -1.64
NPL4	YBR170C	CTF13	P35203	478 aa		4.83	□□□□□ -1.64
NPL4	YBR170C	DHR2	P36009	735 aa	Predicted RBP	4.83	□□□□□ -1.64
NPL4	YBR170C	SFB3	P38810	929 aa		4.83	□□□□□ -1.64
NPL4	YBR170C	TAF11	Q04226	346 aa		4.83	□□□□□ -1.64
NPL4	YBR170C	ADY4	Q05955	493 aa		4.83	□□□□□ -1.64
NPL4	YBR170C	DUS4	Q06063	367 aa		4.83	□□□□□ -1.64
NPL4	YBR170C	NOP12	Q08208	459 aa	Known RBP	4.83	□□□□□ -1.64
NPL4	YBR170C	ICL2	Q12031	575 aa		4.83	□□□□□ -1.64
NPL4	YBR170C	TAH18	Q12181	623 aa		4.83	□□□□□ -1.64
NPL4	YBR170C	TUP1	P16649	713 aa		4.82	□□□□□ -1.64
NPL4	YBR170C	PRP45	P28004	379 aa	Predicted RBP	4.82	□□□□□ -1.64
NPL4	YBR170C	CNS1	P33313	385 aa		4.82	□□□□□ -1.64
NPL4	YBR170C	TFC3	P34111	1160 aa		4.82	□□□□□ -1.64
NPL4	YBR170C	YPT53	P36019	220 aa		4.82	□□□□□ -1.64
NPL4	YBR170C	EHT1	P38295	451 aa		4.82	□□□□□ -1.64
NPL4	YBR170C	VFA1	P40080	203 aa		4.82	□□□□□ -1.64
NPL4	YBR170C	LYS14	P40971	790 aa		4.82	□□□□□ -1.64
NPL4	YBR170C	MRPL19	P53875	158 aa		4.82	□□□□□ -1.64
NPL4	YBR170C	TRS31	Q03337	283 aa		4.82	□□□□□ -1.64
NPL4	YBR170C	THI22	Q06490	572 aa		4.82	□□□□□ -1.64
NPL4	YBR170C	DIA2	Q08496	732 aa	Predicted RBP	4.82	□□□□□ -1.64
NPL4	YBR170C	AIM41	Q12032	185 aa		4.82	□□□□□ -1.64
NPL4	YBR170C	COX17	Q12287	69 aa		4.82	□□□□□ -1.64
NPL4	YBR170C	PEX1	P24004	1043 aa		4.81	□□□□□ -1.64
NPL4	YBR170C	ESL2	P36168	1195 aa		4.81	□□□□□ -1.64
NPL4	YBR170C	LYS9	P38999	446 aa		4.81	□□□□□ -1.64
NPL4	YBR170C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
NPL4	YBR170C	MEF2	P39677	819 aa		4.81	□□□□□ -1.64
NPL4	YBR170C	TEL2	P53038	688 aa		4.81	□□□□□ -1.64
NPL4	YBR170C	ATG21	Q02887	496 aa		4.81	□□□□□ -1.64
NPL4	YBR170C	YAP6	Q03935	383 aa		4.81	□□□□□ -1.64
NPL4	YBR170C	VPS64	Q03944	604 aa		4.81	□□□□□ -1.64
NPL4	YBR170C	CTK1	Q03957	528 aa	Known RBP	4.81	□□□□□ -1.64
NPL4	YBR170C	YLR287C	Q05881	355 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 18 ms