RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W RGD1P38339 666 aa14.59□□□□□ -0.07
DEP1YAL013W STB5P38699 743 aa14.59□□□□□ -0.07
DEP1YAL013W AIM18P38884 321 aa14.59□□□□□ -0.07
DEP1YAL013W SAP1P39955 897 aaKnown RBP14.59□□□□□ -0.07
DEP1YAL013W RRT5P43607 289 aa14.59□□□□□ -0.07
DEP1YAL013W BET4Q00618 327 aa14.59□□□□□ -0.07
DEP1YAL013W ECM22Q05958 814 aaPredicted RBP14.59□□□□□ -0.07
DEP1YAL013W SEY1Q99287 776 aa14.59□□□□□ -0.07
DEP1YAL013W ARG4P04076 463 aaPredicted RBP14.58□□□□□ -0.08
DEP1YAL013W MSH1P25846 959 aa14.58□□□□□ -0.08
DEP1YAL013W RAD27P26793 382 aa14.58□□□□□ -0.08
DEP1YAL013W MSC7P38694 644 aa14.58□□□□□ -0.08
DEP1YAL013W DIA4P38705 446 aaPredicted RBP14.58□□□□□ -0.08
DEP1YAL013W MND2P40577 368 aa14.58□□□□□ -0.08
DEP1YAL013W BFA1P47113 574 aa14.58□□□□□ -0.08
DEP1YAL013W YJR079WP47126 109 aa14.58□□□□□ -0.08
DEP1YAL013W YOR223WQ12015 292 aa14.58□□□□□ -0.08
DEP1YAL013W PGS1P25578 521 aa14.57□□□□□ -0.08
DEP1YAL013W MGT1P26188 188 aa14.57□□□□□ -0.08
DEP1YAL013W HSP78P33416 811 aa14.57□□□□□ -0.08
DEP1YAL013W TSA1P34760 196 aaKnown RBP14.57□□□□□ -0.08
DEP1YAL013W MSR1P38714 643 aa14.57□□□□□ -0.08
DEP1YAL013W PRM9P39551 298 aa14.57□□□□□ -0.08
DEP1YAL013W RNT1Q02555 471 aa14.57□□□□□ -0.08
DEP1YAL013W AAD4Q07747 329 aa14.57□□□□□ -0.08
DEP1YAL013W YLL056CQ12177 298 aa14.57□□□□□ -0.08
DEP1YAL013W GPM3Q12326 303 aa14.57□□□□□ -0.08
DEP1YAL013W PAB1P04147 577 aaKnown RBP RIP-Chip data14.56□□□□□ -0.08not detected
DEP1YAL013W IMA3P0CW40 589 aa14.56□□□□□ -0.08
DEP1YAL013W IMA4P0CW41 589 aa14.56□□□□□ -0.08
DEP1YAL013W RPC37P36121 282 aa14.56□□□□□ -0.08
DEP1YAL013W FSH1P38777 243 aaKnown RBP14.56□□□□□ -0.08
DEP1YAL013W SSP1P38871 571 aa14.56□□□□□ -0.08
DEP1YAL013W CCT2P39076 527 aaKnown RBP14.56□□□□□ -0.08
DEP1YAL013W MMF1P40185 145 aaKnown RBP14.56□□□□□ -0.08
DEP1YAL013W CPR6P53691 371 aaKnown RBP14.56□□□□□ -0.08
DEP1YAL013W NMA111P53920 997 aa14.56□□□□□ -0.08
DEP1YAL013W SHR3Q02774 210 aa14.56□□□□□ -0.08
DEP1YAL013W USA1Q03714 838 aa14.56□□□□□ -0.08
DEP1YAL013W SPG3Q04398 127 aaPredicted RBP14.56□□□□□ -0.08
DEP1YAL013W IMA2Q08295 589 aa14.56□□□□□ -0.08
DEP1YAL013W SAM3Q08986 587 aa14.56□□□□□ -0.08
DEP1YAL013W ARP7Q12406 477 aa14.56□□□□□ -0.08
DEP1YAL013W POL3P15436 1097 aa14.55□□□□□ -0.08
DEP1YAL013W YKR051WP36142 418 aa14.55□□□□□ -0.08
DEP1YAL013W FMP10P40098 244 aa14.55□□□□□ -0.08
DEP1YAL013W SAE2P46946 345 aa14.55□□□□□ -0.08
DEP1YAL013W VTC4P47075 721 aa14.55□□□□□ -0.08
DEP1YAL013W URB2P47108 1174 aa14.55□□□□□ -0.08
DEP1YAL013W YMR027WQ04371 470 aa14.55□□□□□ -0.08
DEP1YAL013W PMT7Q06644 662 aa14.55□□□□□ -0.08
DEP1YAL013W PUF2Q12221 1075 aaKnown RBP RIP-Chip data14.55□□□□□ -0.08not detected
DEP1YAL013W RUD3Q12234 484 aaKnown RBP14.55□□□□□ -0.08
DEP1YAL013W MAS1P10507 462 aa14.54□□□□□ -0.08
DEP1YAL013W ILV6P25605 309 aaKnown RBP14.54□□□□□ -0.08
DEP1YAL013W YIH1P25637 258 aa14.54□□□□□ -0.08
DEP1YAL013W YBR225WP38321 900 aa14.54□□□□□ -0.08
DEP1YAL013W LAM1P38851 1228 aa14.54□□□□□ -0.08
DEP1YAL013W CKB2P38930 258 aa14.54□□□□□ -0.08
DEP1YAL013W YIR016WP40572 265 aa14.54□□□□□ -0.08
DEP1YAL013W YPR003CP53394 754 aa14.54□□□□□ -0.08
DEP1YAL013W COG6P53959 839 aa14.54□□□□□ -0.08
DEP1YAL013W MTD1Q02046 320 aaKnown RBP14.54□□□□□ -0.08
DEP1YAL013W HER2Q03557 464 aa14.54□□□□□ -0.08
DEP1YAL013W ARA2Q04212 335 aa14.54□□□□□ -0.08
DEP1YAL013W CMD1P06787 147 aaKnown RBP14.53□□□□□ -0.08
DEP1YAL013W RAD5P32849 1169 aaPredicted RBP14.53□□□□□ -0.08
DEP1YAL013W AIM26P32858 118 aa14.53□□□□□ -0.08
DEP1YAL013W FAF1P40546 346 aaPredicted RBP14.53□□□□□ -0.08
DEP1YAL013W PXA1P41909 870 aa14.53□□□□□ -0.08
DEP1YAL013W MNN11P46985 422 aaKnown RBP14.53□□□□□ -0.08
DEP1YAL013W YNL144CP53907 740 aa14.53□□□□□ -0.08
DEP1YAL013W VPS9P54787 451 aa14.53□□□□□ -0.08
DEP1YAL013W GRX8Q05926 109 aa14.53□□□□□ -0.08
DEP1YAL013W MPC54Q08550 464 aa14.53□□□□□ -0.08
DEP1YAL013W TSR4P25040 408 aa14.52□□□□□ -0.09
DEP1YAL013W CDC27P38042 758 aa14.52□□□□□ -0.09
DEP1YAL013W BIT2P38346 545 aa14.52□□□□□ -0.09
DEP1YAL013W SCC4P40090 624 aa14.52□□□□□ -0.09
DEP1YAL013W MRX6P48564 524 aa14.52□□□□□ -0.09
DEP1YAL013W INA17Q02888 182 aa14.52□□□□□ -0.09
DEP1YAL013W HEH2Q03281 663 aa14.52□□□□□ -0.09
DEP1YAL013W AI5_ALPHAQ9ZZX1 630 aa14.52□□□□□ -0.09
DEP1YAL013W QCR6P00127 147 aa14.51□□□□□ -0.09
DEP1YAL013W PTC3P34221 468 aaKnown RBP14.51□□□□□ -0.09
DEP1YAL013W MAC1P35192 417 aa14.51□□□□□ -0.09
DEP1YAL013W OAF3P36023 863 aa14.51□□□□□ -0.09
DEP1YAL013W PPE1P38796 400 aa14.51□□□□□ -0.09
DEP1YAL013W STL1P39932 569 aa14.51□□□□□ -0.09
DEP1YAL013W ALA1P40825 983 aaKnown RBP14.51□□□□□ -0.09
DEP1YAL013W MAF1P41910 395 aa14.51□□□□□ -0.09
DEP1YAL013W SNG1P46950 547 aa14.51□□□□□ -0.09
DEP1YAL013W TAH11P47112 604 aa14.51□□□□□ -0.09
DEP1YAL013W MCM6P53091 1017 aaKnown RBP14.51□□□□□ -0.09
DEP1YAL013W MSH6Q03834 1242 aa14.51□□□□□ -0.09
DEP1YAL013W UTP13Q05946 817 aaKnown RBP14.51□□□□□ -0.09
DEP1YAL013W OMS1Q06668 471 aa14.51□□□□□ -0.09
DEP1YAL013W SPE3Q12074 293 aaKnown RBP14.51□□□□□ -0.09
DEP1YAL013W ILV2P07342 687 aaKnown RBP14.5□□□□□ -0.09
DEP1YAL013W MET16P18408 261 aaPredicted RBP14.5□□□□□ -0.09
Retrieved 100 of 5,963 RNA–protein pairs in 46.5 ms