RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	TRMT1	Q9NXH9	659 aa	Known RBP	13.45	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	TNS2	Q63HR2	1409 aa		13.45	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	ADORA1	P30542	326 aa		13.45	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	APOBR	Q0VD83	1088 aa		13.45	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	BARGIN	Q6ZT62	677 aa		13.45	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	FILIP1	Q7Z7B0	1213 aa		13.45	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	ARHGEF10L	Q9HCE6	1279 aa		13.45	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	BCL9L	Q86UU0	1499 aa		13.45	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	PALLD	Q8WX93	1383 aa		13.45	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	PSMA5	P28066	241 aa		13.44	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	VPS72	Q15906	364 aa		13.44	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	CCDC87	Q9NVE4	849 aa		13.44	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	AFF2	P51816	1311 aa		13.44	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	HIP1	O00291	1037 aa		13.44	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	NAT1	P18440	290 aa		13.44	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	HAND2	P61296	217 aa		13.44	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	SCRN1	Q12765	414 aa		13.44	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	CHAF1A	Q13111	956 aa	Predicted RBP	13.44	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	RNF20	Q5VTR2	975 aa		13.44	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	C11orf57	Q6ZUT1	292 aa	Predicted RBP	13.44	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	PDCL2	Q8N4E4	241 aa		13.44	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	MKL1	Q969V6	931 aa		13.44	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	SLIT2	O94813	1529 aa		13.44	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	USP27X	A6NNY8	438 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	STK10	O94804	968 aa	Known RBP	13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	ISM2	Q6H9L7	571 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	NLRP10	Q86W26	655 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	CACTIN	Q8WUQ7	758 aa	Known RBP	13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	PRIMPOL	Q96LW4	560 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	HAUS7	Q99871	368 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	SPTLC3	Q9NUV7	552 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	PDE6B	P35913	854 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	IFIT5	Q13325	482 aa	Known RBP	13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	SCARF1	Q14162	830 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	INTS5	Q6P9B9	1019 aa	Known RBP	13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	MICALL1	Q8N3F8	863 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	MORC4	Q8TE76	937 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	SPOCK3	Q9BQ16	436 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	ISCA1	Q9BUE6	129 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	GJB4	Q9NTQ9	266 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	CLIP2	Q9UDT6	1046 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	NRAP	Q86VF7	1730 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	IRS4	O14654	1257 aa	Predicted RBP	13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	HMGN5	P82970	282 aa	Known RBP	13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	MCMDC2	Q4G0Z9	681 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	CCDC24	Q8N4L8	307 aa		13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	PUF60	Q9UHX1	559 aa	Known RBP	13.43	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	AFDN	P55196	1824 aa	Known RBP	13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063		M0R2C6	588 aa		13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	IL6ST	P40189	918 aa	Predicted RBP	13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	PTPN21	Q16825	1174 aa		13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	TPD52L1	Q16890	204 aa	Predicted RBP	13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	WDR78	Q5VTH9	848 aa		13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	GTF3C6	Q969F1	213 aa		13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	PAG1	Q9NWQ8	432 aa		13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	ITGB4	P16144	1822 aa		13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	GOLGA6L6	A8MZA4	724 aa		13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	CAPN15	O75808	1086 aa		13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	TNNT1	P13805	278 aa		13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	USPL1	Q5W0Q7	1092 aa		13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	HELB	Q8NG08	1087 aa	Predicted RBP	13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	NKX2-3	Q8TAU0	364 aa		13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	GREM2	Q9H772	168 aa		13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	FEZ2	Q9UHY8	353 aa	Predicted RBP	13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	DENND2A	Q9ULE3	1009 aa		13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	GLI3	P10071	1580 aa		13.42	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063		A0A1B0GUL7	405 aa		13.41	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	PARN	O95453	639 aa	Known RBP	13.41	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	CTDNEP1	O95476	244 aa		13.41	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	CCDC172	P0C7W6	258 aa		13.41	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	KCNA1	Q09470	495 aa		13.41	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	ZSCAN25	Q6NSZ9	544 aa		13.41	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	LDHAL6A	Q6ZMR3	332 aa		13.41	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	KBTBD3	Q8NAB2	608 aa		13.41	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	GJD4	Q96KN9	370 aa	Predicted RBP	13.41	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	ZNF75D	P51815	510 aa		13.41	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	GOLPH3L	Q9H4A5	285 aa		13.41	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	CNNM1	Q9NRU3	951 aa		13.41	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	CEP126	Q9P2H0	1117 aa		13.41	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	ARFGEF2	Q9Y6D5	1785 aa		13.41	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	BIN1	O00499	593 aa		13.4	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	ITGA6	P23229	1130 aa		13.4	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	APLP1	P51693	650 aa		13.4	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	QTRT2	Q9H974	415 aa	Known RBP	13.4	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	MAST3	O60307	1309 aa		13.4	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	PCCA	P05165	728 aa	Predicted RBP	13.4	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	IFIT1	P09914	478 aa	Known RBP	13.4	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	PDC	P20941	246 aa		13.4	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	BDNF	P23560	247 aa		13.4	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	EIF5	P55010	431 aa	Known RBP	13.4	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	CCAR1	Q8IX12	1150 aa	Known RBP	13.4	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	OSBP2	Q969R2	916 aa		13.4	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.4	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	UBN2	Q6ZU65	1347 aa		13.4	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	EYA2	O00167	538 aa		13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	PES1	O00541	588 aa	Known RBP	13.39	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 173.3 ms