RNA–Protein interactions for RNA: ENST00000553882.1

ACTN1-211, Transcript of actinin alpha 1, humanhuman

TSL 2

Gene ACTN1, Length 2,636 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-211ENST00000553882 PUM3Q15397 648 aaKnown RBP16.9■□□□□ 0.3
ACTN1-211ENST00000553882 KRT40Q6A162 431 aa16.9■□□□□ 0.3
ACTN1-211ENST00000553882 TCRBV5S4A2TA0A5A2 114 aa16.89■□□□□ 0.29
ACTN1-211ENST00000553882 STRBPQ96SI9 672 aaKnown RBP16.89■□□□□ 0.29
ACTN1-211ENST00000553882 TRMT1Q9NXH9 659 aaKnown RBP16.89■□□□□ 0.29
ACTN1-211ENST00000553882 WDR19Q8NEZ3 1342 aa16.89■□□□□ 0.29
ACTN1-211ENST00000553882 ZBTB43O43298 467 aa16.89■□□□□ 0.29
ACTN1-211ENST00000553882 MBD4O95243 580 aa16.89■□□□□ 0.29
ACTN1-211ENST00000553882 ARID4AP29374 1257 aaPredicted RBP16.89■□□□□ 0.29
ACTN1-211ENST00000553882 RASGRF1Q13972 1273 aa16.89■□□□□ 0.29
ACTN1-211ENST00000553882 TMEM67Q5HYA8 995 aa16.89■□□□□ 0.29
ACTN1-211ENST00000553882 AEBP2Q6ZN18 517 aaPredicted RBP16.89■□□□□ 0.29
ACTN1-211ENST00000553882 ZNF512BQ96KM6 892 aaPredicted RBP16.89■□□□□ 0.29
ACTN1-211ENST00000553882 EPB41L4AQ9HCS5 686 aaPredicted RBP16.89■□□□□ 0.29
ACTN1-211ENST00000553882 ITGB4P16144 1822 aa16.89■□□□□ 0.29
ACTN1-211ENST00000553882 BCL9O00512 1426 aa16.88■□□□□ 0.29
ACTN1-211ENST00000553882 SMC2O95347 1197 aa16.88■□□□□ 0.29
ACTN1-211ENST00000553882 SPATA5Q8NB90 893 aa16.88■□□□□ 0.29
ACTN1-211ENST00000553882 LPIN2Q92539 896 aa16.88■□□□□ 0.29
ACTN1-211ENST00000553882 ZMYND15Q9H091 742 aa16.88■□□□□ 0.29
ACTN1-211ENST00000553882 ARMT1Q9H993 441 aa16.88■□□□□ 0.29
ACTN1-211ENST00000553882 SEC31BQ9NQW1 1179 aa16.88■□□□□ 0.29
ACTN1-211ENST00000553882 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.88■□□□□ 0.29
ACTN1-211ENST00000553882 MYH3P11055 1940 aa16.88■□□□□ 0.29
ACTN1-211ENST00000553882 GOLGA8AA7E2F4 631 aa16.88■□□□□ 0.29
ACTN1-211ENST00000553882 RANBP6O60518 1105 aaKnown RBP16.88■□□□□ 0.29
ACTN1-211ENST00000553882 RRP12Q5JTH9 1297 aaKnown RBP16.88■□□□□ 0.29
ACTN1-211ENST00000553882 NBPF11Q86T75 865 aa16.88■□□□□ 0.29
ACTN1-211ENST00000553882 IGDCC4Q8TDY8 1250 aa16.88■□□□□ 0.29
ACTN1-211ENST00000553882 NAPBQ9H115 298 aa16.88■□□□□ 0.29
ACTN1-211ENST00000553882 LY9Q9HBG7 655 aa16.88■□□□□ 0.29
ACTN1-211ENST00000553882 TOMM22Q9NS69 142 aa16.88■□□□□ 0.29
ACTN1-211ENST00000553882 ATRNO75882 1429 aa16.88■□□□□ 0.29
ACTN1-211ENST00000553882 CMA1P23946 247 aa16.87■□□□□ 0.29
ACTN1-211ENST00000553882 SLC39A14Q15043 492 aa16.87■□□□□ 0.29
ACTN1-211ENST00000553882 CLIC6Q96NY7 704 aa16.87■□□□□ 0.29
ACTN1-211ENST00000553882 ZKSCAN3Q9BRR0 538 aa16.87■□□□□ 0.29
ACTN1-211ENST00000553882 IFNKQ9P0W0 207 aa16.87■□□□□ 0.29
ACTN1-211ENST00000553882 ZSWIM5Q9P217 1185 aa16.87■□□□□ 0.29
ACTN1-211ENST00000553882 C4AP0C0L4 1744 aa16.87■□□□□ 0.29
ACTN1-211ENST00000553882 C4BP0C0L5 1744 aa16.87■□□□□ 0.29
ACTN1-211ENST00000553882 PRKAB2O43741 272 aa16.87■□□□□ 0.29
ACTN1-211ENST00000553882 CDKL5O76039 1030 aa16.87■□□□□ 0.29
ACTN1-211ENST00000553882 IARSP41252 1262 aaKnown RBP16.87■□□□□ 0.29
ACTN1-211ENST00000553882 CCZ1BP86790 482 aa16.87■□□□□ 0.29
ACTN1-211ENST00000553882 CCZ1P86791 482 aaPredicted RBP16.87■□□□□ 0.29
ACTN1-211ENST00000553882 CPLX2Q6PUV4 134 aaKnown RBP16.87■□□□□ 0.29
ACTN1-211ENST00000553882 CCDC82Q8N4S0 544 aa16.87■□□□□ 0.29
ACTN1-211ENST00000553882 MPHOSPH8Q99549 860 aa16.87■□□□□ 0.29
ACTN1-211ENST00000553882 CCDC94Q9BW85 323 aaPredicted RBP16.87■□□□□ 0.29
ACTN1-211ENST00000553882 XPO4Q9C0E2 1151 aaKnown RBP16.87■□□□□ 0.29
ACTN1-211ENST00000553882 DDX60Q8IY21 1712 aaKnown RBP16.87■□□□□ 0.29
ACTN1-211ENST00000553882 IFIT3O14879 490 aaKnown RBP16.86■□□□□ 0.29
ACTN1-211ENST00000553882 UQCRFS1P1P0C7P4 283 aa16.86■□□□□ 0.29
ACTN1-211ENST00000553882 SYKP43405 635 aa16.86■□□□□ 0.29
ACTN1-211ENST00000553882 PPP4R3BQ5MIZ7 849 aa16.86■□□□□ 0.29
ACTN1-211ENST00000553882 IFNL3Q8IZI9 196 aa16.86■□□□□ 0.29
ACTN1-211ENST00000553882 SLC26A6Q9BXS9 759 aa16.86■□□□□ 0.29
ACTN1-211ENST00000553882 TACC3Q9Y6A5 838 aa16.86■□□□□ 0.29
ACTN1-211ENST00000553882 CTIFO43310 598 aaKnown RBP16.86■□□□□ 0.29
ACTN1-211ENST00000553882 NAA30Q147X3 362 aaPredicted RBP16.86■□□□□ 0.29
ACTN1-211ENST00000553882 CEP135Q66GS9 1140 aa16.86■□□□□ 0.29
ACTN1-211ENST00000553882 FAM217BQ9NTX9 383 aaPredicted RBP16.86■□□□□ 0.29
ACTN1-211ENST00000553882 LRP6O75581 1613 aa16.86■□□□□ 0.29
ACTN1-211ENST00000553882 NUP98P52948 1817 aa16.85■□□□□ 0.29
ACTN1-211ENST00000553882 SMTNL1A8MU46 457 aa16.85■□□□□ 0.29
ACTN1-211ENST00000553882 FGFR2P21802 821 aa16.85■□□□□ 0.29
ACTN1-211ENST00000553882 LMOD1P29536 600 aaPredicted RBP16.85■□□□□ 0.29
ACTN1-211ENST00000553882 MAP3K12Q12852 859 aa16.85■□□□□ 0.29
ACTN1-211ENST00000553882 NTRK3Q16288 839 aa16.85■□□□□ 0.29
ACTN1-211ENST00000553882 SUSD4Q5VX71 490 aa16.85■□□□□ 0.29
ACTN1-211ENST00000553882 SHC4Q6S5L8 630 aa16.85■□□□□ 0.29
ACTN1-211ENST00000553882 TMEM87BQ96K49 555 aa16.85■□□□□ 0.29
ACTN1-211ENST00000553882 PKNOX2Q96KN3 472 aa16.85■□□□□ 0.29
ACTN1-211ENST00000553882 SLC12A7Q9Y666 1083 aa16.85■□□□□ 0.29
ACTN1-211ENST00000553882 SLC5A1P13866 664 aa16.85■□□□□ 0.29
ACTN1-211ENST00000553882 RBM6P78332 1123 aaKnown RBP16.85■□□□□ 0.29
ACTN1-211ENST00000553882 TRIM29Q14134 588 aa16.85■□□□□ 0.29
ACTN1-211ENST00000553882 CMTR1Q8N1G2 835 aaKnown RBP16.85■□□□□ 0.29
ACTN1-211ENST00000553882 PDCL2Q8N4E4 241 aa16.85■□□□□ 0.29
ACTN1-211ENST00000553882 MIGA1Q8NAN2 632 aa16.85■□□□□ 0.29
ACTN1-211ENST00000553882 IQSEC3Q9UPP2 1182 aaPredicted RBP16.85■□□□□ 0.29
ACTN1-211ENST00000553882 MROH5Q6ZUA9 1318 aa16.85■□□□□ 0.29
ACTN1-211ENST00000553882 PATL2C9JE40 543 aaKnown RBP16.84■□□□□ 0.29
ACTN1-211ENST00000553882 EXOC5O00471 708 aa16.84■□□□□ 0.29
ACTN1-211ENST00000553882 NEMFO60524 1076 aa16.84■□□□□ 0.29
ACTN1-211ENST00000553882 IL6STP40189 918 aaPredicted RBP16.84■□□□□ 0.29
ACTN1-211ENST00000553882 BCAMP50895 628 aa16.84■□□□□ 0.29
ACTN1-211ENST00000553882 NLRP12P59046 1061 aa16.84■□□□□ 0.29
ACTN1-211ENST00000553882 SPECC1Q5M775 1068 aa16.84■□□□□ 0.29
ACTN1-211ENST00000553882 TMC6Q7Z403 805 aa16.84■□□□□ 0.29
ACTN1-211ENST00000553882 ZNF34Q8IZ26 560 aa16.84■□□□□ 0.29
ACTN1-211ENST00000553882 CCDC112Q8NEF3 446 aa16.84■□□□□ 0.29
ACTN1-211ENST00000553882 ATP1A3P13637 1013 aa16.84■□□□□ 0.29
ACTN1-211ENST00000553882 GUCY1A2P33402 732 aa16.84■□□□□ 0.29
ACTN1-211ENST00000553882 PNOCQ13519 176 aa16.84■□□□□ 0.29
ACTN1-211ENST00000553882 PTPAQ15257 358 aa16.84■□□□□ 0.29
ACTN1-211ENST00000553882 SLIT2O94813 1529 aa16.84■□□□□ 0.29
ACTN1-211ENST00000553882 ERVV-1B6SEH8 477 aa16.83■□□□□ 0.29
ACTN1-211ENST00000553882 TDO2P48775 406 aa16.83■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms