RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 SAMD1Q6SPF0 538 aaPredicted RBP9.78□□□□□ -0.84
YBX3-208ENST00000540447 PPP1R13BQ96KQ4 1090 aa9.78□□□□□ -0.84
YBX3-208ENST00000540447 UTP6Q9NYH9 597 aaKnown RBP9.78□□□□□ -0.84
YBX3-208ENST00000540447 PDHA1P08559 390 aa9.78□□□□□ -0.84
YBX3-208ENST00000540447 KLHL7Q8IXQ5 586 aa9.78□□□□□ -0.84
YBX3-208ENST00000540447 EIF2AQ9BY44 585 aaKnown RBP9.78□□□□□ -0.84
YBX3-208ENST00000540447 PFDN4Q9NQP4 134 aa9.78□□□□□ -0.84
YBX3-208ENST00000540447 TPD52L2O43399 206 aaKnown RBP9.77□□□□□ -0.84
YBX3-208ENST00000540447 ARID5AQ03989 594 aa9.77□□□□□ -0.84
YBX3-208ENST00000540447 CETN1Q12798 172 aa9.77□□□□□ -0.84
YBX3-208ENST00000540447 MYO1EQ12965 1108 aa9.77□□□□□ -0.84
YBX3-208ENST00000540447 MTX1Q13505 466 aa9.77□□□□□ -0.84
YBX3-208ENST00000540447 TBC1D5Q92609 795 aa9.77□□□□□ -0.84
YBX3-208ENST00000540447 PARD6BQ9BYG5 372 aa9.77□□□□□ -0.84
YBX3-208ENST00000540447 KLC4Q9NSK0 619 aa9.77□□□□□ -0.84
YBX3-208ENST00000540447 ANKRD30BQ9BXX2 1392 aa9.77□□□□□ -0.84
YBX3-208ENST00000540447 MAN1A2O60476 641 aa9.77□□□□□ -0.85
YBX3-208ENST00000540447 NUDCD3Q8IVD9 361 aa9.77□□□□□ -0.85
YBX3-208ENST00000540447 BRF1Q92994 677 aa9.77□□□□□ -0.85
YBX3-208ENST00000540447 BICD1Q96G01 975 aa9.77□□□□□ -0.85
YBX3-208ENST00000540447 GOLGA8AA7E2F4 631 aa9.77□□□□□ -0.85
YBX3-208ENST00000540447 CLUL1Q15846 466 aa9.77□□□□□ -0.85
YBX3-208ENST00000540447 LONRF3Q496Y0 759 aa9.77□□□□□ -0.85
YBX3-208ENST00000540447 TRIM31Q9BZY9 425 aa9.77□□□□□ -0.85
YBX3-208ENST00000540447 SPTLC3Q9NUV7 552 aa9.77□□□□□ -0.85
YBX3-208ENST00000540447 APOEP02649 317 aa9.77□□□□□ -0.85
YBX3-208ENST00000540447 STRN4Q9NRL3 753 aa9.77□□□□□ -0.85
YBX3-208ENST00000540447 XPO4Q9C0E2 1151 aaKnown RBP9.77□□□□□ -0.85
YBX3-208ENST00000540447 MINK1Q8N4C8 1332 aaPredicted RBP9.77□□□□□ -0.85
YBX3-208ENST00000540447 GPT2Q8TD30 523 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 BOLA2Q9H3K6 86 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 PHLPP2Q6ZVD8 1323 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 TMEM110-MUSTN1A8MSY1 372 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 IARSP41252 1262 aaKnown RBP9.76□□□□□ -0.85
YBX3-208ENST00000540447 AK2P54819 239 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 ZBTB10Q96DT7 871 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 USP26Q9BXU7 913 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 SLC12A7Q9Y666 1083 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 ERICH3Q5RHP9 1530 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 IBTKQ9P2D0 1353 aaPredicted RBP9.76□□□□□ -0.85
YBX3-208ENST00000540447 CCT6AP40227 531 aaKnown RBP9.76□□□□□ -0.85
YBX3-208ENST00000540447 TBC1D1Q86TI0 1168 aaPredicted RBP9.76□□□□□ -0.85
YBX3-208ENST00000540447 NOX5Q96PH1 765 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 OSBPL1AQ9BXW6 950 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 RAB34Q9BZG1 259 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.76□□□□□ -0.85
YBX3-208ENST00000540447 SNUPNO95149 360 aaKnown RBP9.76□□□□□ -0.85
YBX3-208ENST00000540447 TMED10P49755 219 aaKnown RBP9.76□□□□□ -0.85
YBX3-208ENST00000540447 KMT5BQ4FZB7 885 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 HDGFL1Q5TGJ6 251 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 C16orf87Q6PH81 154 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 CCDC82Q8N4S0 544 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 EVI5LQ96CN4 794 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 FHOD3Q2V2M9 1422 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 SERPINB6P35237 376 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 UBA7P41226 1012 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 GJC2Q5T442 439 aaPredicted RBP9.76□□□□□ -0.85
YBX3-208ENST00000540447 AIDAQ96BJ3 306 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 CALML4Q96GE6 196 aa9.76□□□□□ -0.85
YBX3-208ENST00000540447 ZC3H18Q86VM9 953 aaKnown RBP9.75□□□□□ -0.85
YBX3-208ENST00000540447 MRPL46Q9H2W6 279 aaKnown RBP9.75□□□□□ -0.85
YBX3-208ENST00000540447 TCP11L1Q9NUJ3 509 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 TSKSQ9UJT2 592 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 TMPOP42166 694 aaKnown RBP9.75□□□□□ -0.85
YBX3-208ENST00000540447 CASP8Q14790 479 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 CCDC152Q4G0S7 254 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 CDC23Q9UJX2 597 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 SLC4A7Q9Y6M7 1214 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 A0A1B0GVL5 298 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 CHGBP05060 677 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 KRT10P13645 584 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 LAMB3Q13751 1172 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 UAP1Q16222 522 aaPredicted RBP9.75□□□□□ -0.85
YBX3-208ENST00000540447 TMEM266Q2M3C6 531 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 SLC44A4Q53GD3 710 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 KIAA2013Q8IYS2 634 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 HVCN1Q96D96 273 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 PSMB7Q99436 277 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 SLF1Q9BQI6 1058 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 KIF9Q9HAQ2 790 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 TACC3Q9Y6A5 838 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 I3L4J1 428 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 CRYMQ14894 314 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 SEL1L2Q5TEA6 688 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 DYDC2Q96IM9 177 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 SPZ1Q9BXG8 430 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 MIS12Q9H081 205 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 AATFQ9NY61 560 aaKnown RBP eCLIP9.75□□□□□ -0.85
YBX3-208ENST00000540447 KDM1AO60341 852 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 KRT75O95678 551 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 SCP2P22307 547 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 TAF7Q15545 349 aaPredicted RBP9.75□□□□□ -0.85
YBX3-208ENST00000540447 NBPF20Q3BBV1 942 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 FBXW10Q5XX13 1052 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 TSHZ3Q63HK5 1081 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 ATL3Q6DD88 541 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 HS2ST1Q7LGA3 356 aa9.75□□□□□ -0.85
YBX3-208ENST00000540447 GFM2Q969S9 779 aaKnown RBP9.75□□□□□ -0.85
YBX3-208ENST00000540447 ERCC5P28715 1186 aaPredicted RBP9.74□□□□□ -0.85
YBX3-208ENST00000540447 NLRP12P59046 1061 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms