RNA–Protein interactions for RNA: ENST00000531336.1

SMPD1-206, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 2

Gene SMPD1, Length 650 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-206ENST00000531336 USP48Q86UV5 1035 aa16.77■□□□□ 0.28
SMPD1-206ENST00000531336 APOBEC3FQ8IUX4 373 aaKnown RBP16.77■□□□□ 0.28
SMPD1-206ENST00000531336 SULF1Q8IWU6 871 aa16.77■□□□□ 0.28
SMPD1-206ENST00000531336 TMOD2Q9NZR1 351 aa16.77■□□□□ 0.28
SMPD1-206ENST00000531336 FOCADQ5VW36 1801 aa16.76■□□□□ 0.27
SMPD1-206ENST00000531336 TRAF5O00463 557 aa16.76■□□□□ 0.27
SMPD1-206ENST00000531336 PDE6AP16499 860 aa16.76■□□□□ 0.27
SMPD1-206ENST00000531336 CACNB3P54284 484 aa16.76■□□□□ 0.27
SMPD1-206ENST00000531336 SLC9C2Q5TAH2 1124 aa16.76■□□□□ 0.27
SMPD1-206ENST00000531336 CDC42EP5Q6NZY7 148 aa16.76■□□□□ 0.27
SMPD1-206ENST00000531336 CDC37L1Q7L3B6 337 aa16.76■□□□□ 0.27
SMPD1-206ENST00000531336 ADGRA1Q86SQ6 560 aa16.76■□□□□ 0.27
SMPD1-206ENST00000531336 FAM163AQ96GL9 167 aaPredicted RBP16.76■□□□□ 0.27
SMPD1-206ENST00000531336 NOL10Q9BSC4 688 aaKnown RBP16.76■□□□□ 0.27
SMPD1-206ENST00000531336 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.76■□□□□ 0.27
SMPD1-206ENST00000531336 TCP10L2B9ZVM9 353 aa16.75■□□□□ 0.27
SMPD1-206ENST00000531336 IGSF3O75054 1194 aa16.75■□□□□ 0.27
SMPD1-206ENST00000531336 FMR1Q06787 632 aaKnown RBP eCLIP16.75■□□□□ 0.27
SMPD1-206ENST00000531336 DLK2Q6UY11 383 aa16.75■□□□□ 0.27
SMPD1-206ENST00000531336 KBTBD3Q8NAB2 608 aa16.75■□□□□ 0.27
SMPD1-206ENST00000531336 USP40Q9NVE5 1235 aa16.75■□□□□ 0.27
SMPD1-206ENST00000531336 ZNF532Q9HCE3 1301 aa16.74■□□□□ 0.27
SMPD1-206ENST00000531336 GPR75-ASB3A0A0A6YYF3 556 aa16.74■□□□□ 0.27
SMPD1-206ENST00000531336 ITGBL1O95965 494 aaPredicted RBP16.74■□□□□ 0.27
SMPD1-206ENST00000531336 SLFNL1Q499Z3 407 aa16.74■□□□□ 0.27
SMPD1-206ENST00000531336 SKAP1Q86WV1 359 aa16.74■□□□□ 0.27
SMPD1-206ENST00000531336 MIGA1Q8NAN2 632 aa16.74■□□□□ 0.27
SMPD1-206ENST00000531336 FSD1Q9BTV5 496 aa16.74■□□□□ 0.27
SMPD1-206ENST00000531336 OSBPL3Q9H4L5 887 aa16.74■□□□□ 0.27
SMPD1-206ENST00000531336 AATFQ9NY61 560 aaKnown RBP eCLIP16.74■□□□□ 0.27
SMPD1-206ENST00000531336 TRIM6-TRIM34B2RNG4 842 aa16.73■□□□□ 0.27
SMPD1-206ENST00000531336 CHGBP05060 677 aa16.73■□□□□ 0.27
SMPD1-206ENST00000531336 ADD2P35612 726 aa16.73■□□□□ 0.27
SMPD1-206ENST00000531336 C1QTNF8P60827 252 aa16.73■□□□□ 0.27
SMPD1-206ENST00000531336 TNFAIP1Q13829 316 aa16.73■□□□□ 0.27
SMPD1-206ENST00000531336 ZNF408Q9H9D4 720 aa16.73■□□□□ 0.27
SMPD1-206ENST00000531336 NAV1Q8NEY1 1877 aa16.73■□□□□ 0.27
SMPD1-206ENST00000531336 PASKQ96RG2 1323 aa16.72■□□□□ 0.27
SMPD1-206ENST00000531336 TCRBV5S4A2TA0A5A2 114 aa16.72■□□□□ 0.27
SMPD1-206ENST00000531336 BAG3O95817 575 aa16.72■□□□□ 0.27
SMPD1-206ENST00000531336 TNNI2P48788 182 aa16.72■□□□□ 0.27
SMPD1-206ENST00000531336 RHBDL3P58872 404 aa16.72■□□□□ 0.27
SMPD1-206ENST00000531336 DYNLL1P63167 89 aaKnown RBP16.72■□□□□ 0.27
SMPD1-206ENST00000531336 PRAMEF18Q5VWM3 479 aa16.72■□□□□ 0.27
SMPD1-206ENST00000531336 ZSCAN25Q6NSZ9 544 aa16.72■□□□□ 0.27
SMPD1-206ENST00000531336 SH3RF3Q8TEJ3 882 aaPredicted RBP16.72■□□□□ 0.27
SMPD1-206ENST00000531336 RILPL2Q969X0 211 aa16.72■□□□□ 0.27
SMPD1-206ENST00000531336 EVI5LQ96CN4 794 aa16.72■□□□□ 0.27
SMPD1-206ENST00000531336 CDCA5Q96FF9 252 aa16.72■□□□□ 0.27
SMPD1-206ENST00000531336 DEFB129Q9H1M3 183 aa16.72■□□□□ 0.27
SMPD1-206ENST00000531336 RFX7Q2KHR2 1363 aa16.72■□□□□ 0.27
SMPD1-206ENST00000531336 PLCG2P16885 1265 aa16.71■□□□□ 0.27
SMPD1-206ENST00000531336 NFIAQ12857 509 aa16.71■□□□□ 0.27
SMPD1-206ENST00000531336 RASA3Q14644 834 aa16.71■□□□□ 0.27
SMPD1-206ENST00000531336 TTC22Q5TAA0 569 aa16.71■□□□□ 0.27
SMPD1-206ENST00000531336 TMED8Q6PL24 325 aaPredicted RBP16.71■□□□□ 0.27
SMPD1-206ENST00000531336 TEX11Q8IYF3 940 aa16.71■□□□□ 0.27
SMPD1-206ENST00000531336 CNTNAP1P78357 1384 aa16.71■□□□□ 0.27
SMPD1-206ENST00000531336 MAGEB6P1A0A0J9YX57 407 aa16.7■□□□□ 0.26
SMPD1-206ENST00000531336 TCP10Q12799 353 aa16.7■□□□□ 0.26
SMPD1-206ENST00000531336 PICALMQ13492 652 aa16.7■□□□□ 0.26
SMPD1-206ENST00000531336 UBE3CQ15386 1083 aa16.7■□□□□ 0.26
SMPD1-206ENST00000531336 LRRFIP1Q32MZ4 808 aaKnown RBP16.7■□□□□ 0.26
SMPD1-206ENST00000531336 TMEM39BQ9GZU3 492 aa16.7■□□□□ 0.26
SMPD1-206ENST00000531336 FAM198AQ9UFP1 575 aa16.7■□□□□ 0.26
SMPD1-206ENST00000531336 PPP2R3BQ9Y5P8 575 aa16.7■□□□□ 0.26
SMPD1-206ENST00000531336 MYH1P12882 1939 aa16.7■□□□□ 0.26
SMPD1-206ENST00000531336 RNF113AO15541 343 aaKnown RBP16.69■□□□□ 0.26
SMPD1-206ENST00000531336 WDHD1O75717 1129 aaPredicted RBP16.69■□□□□ 0.26
SMPD1-206ENST00000531336 MBD4O95243 580 aa16.69■□□□□ 0.26
SMPD1-206ENST00000531336 CELF2O95319 508 aaKnown RBP16.69■□□□□ 0.26
SMPD1-206ENST00000531336 ZFYP08048 801 aaPredicted RBP16.69■□□□□ 0.26
SMPD1-206ENST00000531336 GSPT1P15170 499 aaKnown RBP16.69■□□□□ 0.26
SMPD1-206ENST00000531336 RGS3P49796 1198 aa16.69■□□□□ 0.26
SMPD1-206ENST00000531336 PPP4CP60510 307 aa16.69■□□□□ 0.26
SMPD1-206ENST00000531336 FKBP1CQ5VVH2 108 aa16.69■□□□□ 0.26
SMPD1-206ENST00000531336 DDX4Q9NQI0 724 aaKnown RBP16.69■□□□□ 0.26
SMPD1-206ENST00000531336 PAPPA2Q9BXP8 1791 aa16.69■□□□□ 0.26
SMPD1-206ENST00000531336 SSC5DA1L4H1 1573 aa16.68■□□□□ 0.26
SMPD1-206ENST00000531336 DDX60LQ5H9U9 1706 aaKnown RBP16.68■□□□□ 0.26
SMPD1-206ENST00000531336 RPAP1Q9BWH6 1393 aaPredicted RBP16.68■□□□□ 0.26
SMPD1-206ENST00000531336 FAM83AQ86UY5 434 aa16.68■□□□□ 0.26
SMPD1-206ENST00000531336 CDAN1Q8IWY9 1227 aa16.68■□□□□ 0.26
SMPD1-206ENST00000531336 LCORLQ8N3X6 602 aa16.68■□□□□ 0.26
SMPD1-206ENST00000531336 APPBP2Q92624 585 aa16.68■□□□□ 0.26
SMPD1-206ENST00000531336 RIOK1Q9BRS2 568 aaKnown RBP16.68■□□□□ 0.26
SMPD1-206ENST00000531336 IDI2Q9BXS1 227 aa16.68■□□□□ 0.26
SMPD1-206ENST00000531336 NF2P35240 595 aa16.67■□□□□ 0.26
SMPD1-206ENST00000531336 APLP1P51693 650 aa16.67■□□□□ 0.26
SMPD1-206ENST00000531336 CERS3Q8IU89 383 aa16.67■□□□□ 0.26
SMPD1-206ENST00000531336 MAPKAPK5Q8IW41 473 aa16.67■□□□□ 0.26
SMPD1-206ENST00000531336 ZFPM1Q8IX07 1006 aa16.67■□□□□ 0.26
SMPD1-206ENST00000531336 TGFBRAP1Q8WUH2 860 aa16.67■□□□□ 0.26
SMPD1-206ENST00000531336 FAM151AQ8WW52 585 aa16.67■□□□□ 0.26
SMPD1-206ENST00000531336 AIDAQ96BJ3 306 aa16.67■□□□□ 0.26
SMPD1-206ENST00000531336 PUS7LQ9H0K6 701 aaKnown RBP16.67■□□□□ 0.26
SMPD1-206ENST00000531336 ARMT1Q9H993 441 aa16.67■□□□□ 0.26
SMPD1-206ENST00000531336 BAZ2AQ9UIF9 1905 aaKnown RBP16.66■□□□□ 0.26
SMPD1-206ENST00000531336 OTOFQ9HC10 1997 aa16.66■□□□□ 0.26
SMPD1-206ENST00000531336 ENTPD3O75355 529 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms