RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 FOCADQ5VW36 1801 aa25.14■■□□□ 1.61
CD44-222ENST00000526025 PPP4CP60510 307 aa25.13■■□□□ 1.61
CD44-222ENST00000526025 SLC9C2Q5TAH2 1124 aa25.13■■□□□ 1.61
CD44-222ENST00000526025 CDC37L1Q7L3B6 337 aa25.13■■□□□ 1.61
CD44-222ENST00000526025 MAGEB6Q8N7X4 407 aa25.13■■□□□ 1.61
CD44-222ENST00000526025 EVI5LQ96CN4 794 aa25.13■■□□□ 1.61
CD44-222ENST00000526025 ZNF70Q9UC06 446 aaPredicted RBP25.13■■□□□ 1.61
CD44-222ENST00000526025 RFX7Q2KHR2 1363 aa25.13■■□□□ 1.61
CD44-222ENST00000526025 ASTN2O75129 1339 aaPredicted RBP25.12■■□□□ 1.61
CD44-222ENST00000526025 ZFYP08048 801 aaPredicted RBP25.12■■□□□ 1.61
CD44-222ENST00000526025 CYP7A1P22680 504 aa25.12■■□□□ 1.61
CD44-222ENST00000526025 ADD2P35612 726 aa25.12■■□□□ 1.61
CD44-222ENST00000526025 TNFAIP1Q13829 316 aa25.12■■□□□ 1.61
CD44-222ENST00000526025 UBE3CQ15386 1083 aa25.12■■□□□ 1.61
CD44-222ENST00000526025 MAP1SQ66K74 1059 aaPredicted RBP25.12■■□□□ 1.61
CD44-222ENST00000526025 SULF1Q8IWU6 871 aa25.12■■□□□ 1.61
CD44-222ENST00000526025 CNTROBQ8N137 903 aa25.12■■□□□ 1.61
CD44-222ENST00000526025 TMOD2Q9NZR1 351 aa25.12■■□□□ 1.61
CD44-222ENST00000526025 TCRBV5S4A2TA0A5A2 114 aa25.11■■□□□ 1.61
CD44-222ENST00000526025 BAG3O95817 575 aa25.11■■□□□ 1.61
CD44-222ENST00000526025 PLCG2P16885 1265 aa25.11■■□□□ 1.61
CD44-222ENST00000526025 BTDP43251 543 aa25.11■■□□□ 1.61
CD44-222ENST00000526025 NOL10Q9BSC4 688 aaKnown RBP25.11■■□□□ 1.61
CD44-222ENST00000526025 TDRD3Q9H7E2 651 aaKnown RBP25.11■■□□□ 1.61
CD44-222ENST00000526025 PPP2R3BQ9Y5P8 575 aa25.11■■□□□ 1.61
CD44-222ENST00000526025 ITGBL1O95965 494 aaPredicted RBP25.1■■□□□ 1.61
CD44-222ENST00000526025 CDC42EP5Q6NZY7 148 aa25.1■■□□□ 1.61
CD44-222ENST00000526025 KRT26Q7Z3Y9 468 aa25.1■■□□□ 1.61
CD44-222ENST00000526025 ADGRA1Q86SQ6 560 aa25.1■■□□□ 1.61
CD44-222ENST00000526025 ZNF532Q9HCE3 1301 aa25.1■■□□□ 1.61
CD44-222ENST00000526025 CLRN2A0PK11 232 aa25.09■■□□□ 1.61
CD44-222ENST00000526025 NPM3O75607 178 aaKnown RBP25.09■■□□□ 1.61
CD44-222ENST00000526025 RHBDL3P58872 404 aa25.09■■□□□ 1.61
CD44-222ENST00000526025 TTC22Q5TAA0 569 aa25.09■■□□□ 1.61
CD44-222ENST00000526025 FAM83AQ86UY5 434 aa25.08■■□□□ 1.61
CD44-222ENST00000526025 FSD1Q9BTV5 496 aa25.08■■□□□ 1.61
CD44-222ENST00000526025 IDI2Q9BXS1 227 aa25.08■■□□□ 1.61
CD44-222ENST00000526025 USP40Q9NVE5 1235 aa25.08■■□□□ 1.61
CD44-222ENST00000526025 PASKQ96RG2 1323 aa25.08■■□□□ 1.6
CD44-222ENST00000526025 RPAP1Q9BWH6 1393 aaPredicted RBP25.07■■□□□ 1.6
CD44-222ENST00000526025 RNF113AO15541 343 aaKnown RBP25.07■■□□□ 1.6
CD44-222ENST00000526025 TNNI2P48788 182 aa25.07■■□□□ 1.6
CD44-222ENST00000526025 GLIS2Q9BZE0 524 aaPredicted RBP25.07■■□□□ 1.6
CD44-222ENST00000526025 VEZTQ9HBM0 779 aa25.07■■□□□ 1.6
CD44-222ENST00000526025 USP48Q86UV5 1035 aa25.06■■□□□ 1.6
CD44-222ENST00000526025 AATFQ9NY61 560 aaKnown RBP eCLIP25.06■■□□□ 1.6
CD44-222ENST00000526025 WDHD1O75717 1129 aaPredicted RBP25.05■■□□□ 1.6
CD44-222ENST00000526025 RIOK1Q9BRS2 568 aaKnown RBP25.05■■□□□ 1.6
CD44-222ENST00000526025 DEFB129Q9H1M3 183 aa25.05■■□□□ 1.6
CD44-222ENST00000526025 COL2A1P02458 1487 aaPredicted RBP25.04■■□□□ 1.6
CD44-222ENST00000526025 TRIM6-TRIM34B2RNG4 842 aa25.04■■□□□ 1.6
CD44-222ENST00000526025 ADM5C9JUS6 153 aa25.04■■□□□ 1.6
CD44-222ENST00000526025 APPBP2Q92624 585 aa25.04■■□□□ 1.6
CD44-222ENST00000526025 CNTNAP1P78357 1384 aa25.04■■□□□ 1.6
CD44-222ENST00000526025 MAGEB6P1A0A0J9YX57 407 aa25.03■■□□□ 1.6
CD44-222ENST00000526025 ENTPD3O75355 529 aa25.03■■□□□ 1.6
CD44-222ENST00000526025 GSPT1P15170 499 aaKnown RBP25.03■■□□□ 1.6
CD44-222ENST00000526025 RASA3Q14644 834 aa25.03■■□□□ 1.6
CD44-222ENST00000526025 FAM151AQ8WW52 585 aa25.03■■□□□ 1.6
CD44-222ENST00000526025 TEX11Q8IYF3 940 aa25.02■■□□□ 1.6
CD44-222ENST00000526025 MIGA1Q8NAN2 632 aa25.02■■□□□ 1.6
CD44-222ENST00000526025 SH3RF3Q8TEJ3 882 aaPredicted RBP25.02■■□□□ 1.6
CD44-222ENST00000526025 TCP10L2B9ZVM9 353 aa25.01■■□□□ 1.59
CD44-222ENST00000526025 CACNB3P54284 484 aa25.01■■□□□ 1.59
CD44-222ENST00000526025 NFIAQ12857 509 aa25.01■■□□□ 1.59
CD44-222ENST00000526025 ZMYM1Q5SVZ6 1142 aa25.01■■□□□ 1.59
CD44-222ENST00000526025 RILPL2Q969X0 211 aa25.01■■□□□ 1.59
CD44-222ENST00000526025 CDCA5Q96FF9 252 aa25.01■■□□□ 1.59
CD44-222ENST00000526025 FAM198AQ9UFP1 575 aa25.01■■□□□ 1.59
CD44-222ENST00000526025 MYH1P12882 1939 aa25.01■■□□□ 1.59
CD44-222ENST00000526025 NAV1Q8NEY1 1877 aa25■■□□□ 1.59
CD44-222ENST00000526025 HIP1O00291 1037 aa25■■□□□ 1.59
CD44-222ENST00000526025 TRAF5O00463 557 aa25■■□□□ 1.59
CD44-222ENST00000526025 C1QTNF8P60827 252 aa25■■□□□ 1.59
CD44-222ENST00000526025 DYNLL1P63167 89 aaKnown RBP25■■□□□ 1.59
CD44-222ENST00000526025 DDX60LQ5H9U9 1706 aaKnown RBP25■■□□□ 1.59
CD44-222ENST00000526025 SDSP20132 328 aa24.99■■□□□ 1.59
CD44-222ENST00000526025 RGS3P49796 1198 aa24.99■■□□□ 1.59
CD44-222ENST00000526025 BMP2KLQ5H9B9 411 aa24.99■■□□□ 1.59
CD44-222ENST00000526025 ATRNL1Q5VV63 1379 aa24.99■■□□□ 1.59
CD44-222ENST00000526025 TEPSINQ96N21 525 aa24.99■■□□□ 1.59
CD44-222ENST00000526025 PAPPA2Q9BXP8 1791 aa24.99■■□□□ 1.59
CD44-222ENST00000526025 CRNKL1Q9BZJ0 848 aaKnown RBP24.99■■□□□ 1.59
CD44-222ENST00000526025 CHGBP05060 677 aa24.98■■□□□ 1.59
CD44-222ENST00000526025 SUPT20HL1Q3ZLR7 823 aa24.98■■□□□ 1.59
CD44-222ENST00000526025 SLFNL1Q499Z3 407 aa24.98■■□□□ 1.59
CD44-222ENST00000526025 LCORLQ8N3X6 602 aa24.98■■□□□ 1.59
CD44-222ENST00000526025 OSBP2Q969R2 916 aa24.98■■□□□ 1.59
CD44-222ENST00000526025 AIDAQ96BJ3 306 aa24.98■■□□□ 1.59
CD44-222ENST00000526025 HOOK2Q96ED9 719 aa24.98■■□□□ 1.59
CD44-222ENST00000526025 PUS7LQ9H0K6 701 aaKnown RBP24.98■■□□□ 1.59
CD44-222ENST00000526025 DDX4Q9NQI0 724 aaKnown RBP24.98■■□□□ 1.59
CD44-222ENST00000526025 HELLSQ9NRZ9 838 aa24.98■■□□□ 1.59
CD44-222ENST00000526025 MBD4O95243 580 aa24.97■■□□□ 1.59
CD44-222ENST00000526025 NF2P35240 595 aa24.97■■□□□ 1.59
CD44-222ENST00000526025 TMEM39BQ9GZU3 492 aa24.97■■□□□ 1.59
CD44-222ENST00000526025 SCAF8Q9UPN6 1271 aaKnown RBP24.97■■□□□ 1.59
CD44-222ENST00000526025 FLT1P17948 1338 aa24.96■■□□□ 1.59
CD44-222ENST00000526025 APLP1P51693 650 aa24.96■■□□□ 1.59
CD44-222ENST00000526025 FKBP1BP68106 108 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms