RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	F13B	P05160	661 aa		4.39	□□□□□ -1.71
CD44-216	ENST00000525293	NFIC	P08651	508 aa		4.39	□□□□□ -1.71
CD44-216	ENST00000525293	GSTP1	P09211	210 aa	Known RBP	4.39	□□□□□ -1.71
CD44-216	ENST00000525293	PDIA4	P13667	645 aa	Known RBP	4.39	□□□□□ -1.71
CD44-216	ENST00000525293	RAB6A	P20340	208 aa		4.39	□□□□□ -1.71
CD44-216	ENST00000525293	ASPA	P45381	313 aa		4.39	□□□□□ -1.71
CD44-216	ENST00000525293	CD97	P48960	835 aa		4.39	□□□□□ -1.71
CD44-216	ENST00000525293	ALG1L	Q6GMV1	187 aa		4.39	□□□□□ -1.71
CD44-216	ENST00000525293	SHISA5	Q8N114	240 aa		4.39	□□□□□ -1.71
CD44-216	ENST00000525293	FBF1	Q8TES7	1133 aa		4.39	□□□□□ -1.71
CD44-216	ENST00000525293	EZH1	Q92800	747 aa	Predicted RBP	4.39	□□□□□ -1.71
CD44-216	ENST00000525293	KCNB2	Q92953	911 aa		4.39	□□□□□ -1.71
CD44-216	ENST00000525293	TBC1D32	Q96NH3	1257 aa		4.39	□□□□□ -1.71
CD44-216	ENST00000525293	OSBPL7	Q9BZF2	842 aa		4.39	□□□□□ -1.71
CD44-216	ENST00000525293	CCDC86	Q9H6F5	360 aa	Known RBP	4.39	□□□□□ -1.71
CD44-216	ENST00000525293	ATG3	Q9NT62	314 aa		4.39	□□□□□ -1.71
CD44-216	ENST00000525293	FAM105A	Q9NUU6	356 aa		4.39	□□□□□ -1.71
CD44-216	ENST00000525293	PPP1R9A	Q9ULJ8	1098 aa		4.39	□□□□□ -1.71
CD44-216	ENST00000525293	KRTAP4-8	A0A0G2JLE6	195 aa		4.38	□□□□□ -1.71
CD44-216	ENST00000525293	ZNF862	O60290	1169 aa		4.38	□□□□□ -1.71
CD44-216	ENST00000525293	SLFN14	P0C7P3	912 aa		4.38	□□□□□ -1.71
CD44-216	ENST00000525293	ADM	P35318	185 aa		4.38	□□□□□ -1.71
CD44-216	ENST00000525293	GRIK1	P39086	918 aa		4.38	□□□□□ -1.71
CD44-216	ENST00000525293	ATP2B2	Q01814	1243 aa		4.38	□□□□□ -1.71
CD44-216	ENST00000525293	C3orf58	Q8NDZ4	430 aa		4.38	□□□□□ -1.71
CD44-216	ENST00000525293	GIMAP7	Q8NHV1	300 aa		4.38	□□□□□ -1.71
CD44-216	ENST00000525293	STK35	Q8TDR2	534 aa		4.38	□□□□□ -1.71
CD44-216	ENST00000525293	LGR6	Q9HBX8	967 aa		4.38	□□□□□ -1.71
CD44-216	ENST00000525293	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-216	ENST00000525293	TMPRSS2	O15393	492 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	LDHB	P07195	334 aa	Known RBP	4.37	□□□□□ -1.71
CD44-216	ENST00000525293	P4HB	P07237	508 aa	Known RBP	4.37	□□□□□ -1.71
CD44-216	ENST00000525293	GSTT1	P30711	240 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	MAP7	Q14244	749 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	INTS5	Q6P9B9	1019 aa	Known RBP	4.37	□□□□□ -1.71
CD44-216	ENST00000525293	TPTE2	Q6XPS3	522 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	PDZD3	Q86UT5	571 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	KRTAP19-1	Q8IUB9	90 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	SULF2	Q8IWU5	870 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	OSBPL1A	Q9BXW6	950 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	SRCIN1	Q9C0H9	1055 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	SEMA6C	Q9H3T2	930 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	GSX1	Q9H4S2	264 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-216	ENST00000525293	ACSS3	Q9H6R3	686 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	CBX8	Q9HC52	389 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	KRT82	Q9NSB4	513 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	PIM2	Q9P1W9	311 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	PRKAG2	Q9UGJ0	569 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	LEMD3	Q9Y2U8	911 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	SYNGAP1	Q96PV0	1343 aa		4.37	□□□□□ -1.71
CD44-216	ENST00000525293	GIPC1	O14908	333 aa		4.36	□□□□□ -1.71
CD44-216	ENST00000525293	DYNC1LI2	O43237	492 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-216	ENST00000525293	FBXO24	O75426	580 aa		4.36	□□□□□ -1.71
CD44-216	ENST00000525293	NME2	P22392	152 aa		4.36	□□□□□ -1.71
CD44-216	ENST00000525293	ARNT	P27540	789 aa		4.36	□□□□□ -1.71
CD44-216	ENST00000525293	HOXA10	P31260	410 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-216	ENST00000525293	ID3	Q02535	119 aa		4.36	□□□□□ -1.71
CD44-216	ENST00000525293	ZAR1	Q86SH2	424 aa		4.36	□□□□□ -1.71
CD44-216	ENST00000525293	GATA6	Q92908	595 aa		4.36	□□□□□ -1.71
CD44-216	ENST00000525293	NECAB3	Q96P71	396 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-216	ENST00000525293	FANCD2OS	Q96PS1	177 aa		4.36	□□□□□ -1.71
CD44-216	ENST00000525293	EMILIN2	Q9BXX0	1053 aa		4.36	□□□□□ -1.71
CD44-216	ENST00000525293	CRIM1	Q9NZV1	1036 aa		4.36	□□□□□ -1.71
CD44-216	ENST00000525293	SPG7	Q9UQ90	795 aa		4.36	□□□□□ -1.71
CD44-216	ENST00000525293	DAGLA	Q9Y4D2	1042 aa		4.36	□□□□□ -1.71
CD44-216	ENST00000525293	ANKRD33B	A6NCL7	494 aa		4.35	□□□□□ -1.71
CD44-216	ENST00000525293	FAM170B	A6NMN3	283 aa		4.35	□□□□□ -1.71
CD44-216	ENST00000525293	BTBD11	A6QL63	1104 aa		4.35	□□□□□ -1.71
CD44-216	ENST00000525293	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	4.35	□□□□□ -1.71
CD44-216	ENST00000525293	HNRNPU	Q00839	825 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
CD44-216	ENST00000525293	KIF4B	Q2VIQ3	1234 aa		4.35	□□□□□ -1.71
CD44-216	ENST00000525293	MAP1S	Q66K74	1059 aa	Predicted RBP	4.35	□□□□□ -1.71
CD44-216	ENST00000525293	MPRIP	Q6WCQ1	1025 aa		4.35	□□□□□ -1.71
CD44-216	ENST00000525293	SND1	Q7KZF4	910 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
CD44-216	ENST00000525293	GRIN3A	Q8TCU5	1115 aa		4.35	□□□□□ -1.71
CD44-216	ENST00000525293	CEP44	Q9C0F1	390 aa		4.35	□□□□□ -1.71
CD44-216	ENST00000525293	ATXN3L	Q9H3M9	355 aa		4.35	□□□□□ -1.71
CD44-216	ENST00000525293	C12orf49	Q9H741	205 aa		4.35	□□□□□ -1.71
CD44-216	ENST00000525293	PIDD1	Q9HB75	910 aa		4.35	□□□□□ -1.71
CD44-216	ENST00000525293	DISC1	Q9NRI5	854 aa		4.35	□□□□□ -1.71
CD44-216	ENST00000525293	C1GALT1	Q9NS00	363 aa		4.35	□□□□□ -1.71
CD44-216	ENST00000525293	ENC1	O14682	589 aa		4.34	□□□□□ -1.71
CD44-216	ENST00000525293	CYP26A1	O43174	497 aa		4.34	□□□□□ -1.71
CD44-216	ENST00000525293	RNGTT	O60942	597 aa	Known RBP	4.34	□□□□□ -1.71
CD44-216	ENST00000525293	ADAMTS4	O75173	837 aa		4.34	□□□□□ -1.71
CD44-216	ENST00000525293	PAGE1	O75459	146 aa		4.34	□□□□□ -1.71
CD44-216	ENST00000525293	USP17L7	P0C7H9	530 aa		4.34	□□□□□ -1.71
CD44-216	ENST00000525293	HCLS1	P14317	486 aa	Predicted RBP	4.34	□□□□□ -1.71
CD44-216	ENST00000525293	SPINK2	P20155	84 aa		4.34	□□□□□ -1.71
CD44-216	ENST00000525293	BMP6	P22004	513 aa		4.34	□□□□□ -1.71
CD44-216	ENST00000525293	ZNF252P-AS1	Q0IIN9	211 aa		4.34	□□□□□ -1.71
CD44-216	ENST00000525293	TTLL4	Q14679	1199 aa		4.34	□□□□□ -1.71
CD44-216	ENST00000525293	DUSP27	Q5VZP5	1158 aa		4.34	□□□□□ -1.71
CD44-216	ENST00000525293	SEZ6L2	Q6UXD5	910 aa		4.34	□□□□□ -1.71
CD44-216	ENST00000525293	DTX1	Q86Y01	620 aa		4.34	□□□□□ -1.71
CD44-216	ENST00000525293	SMYD4	Q8IYR2	804 aa	Predicted RBP	4.34	□□□□□ -1.71
CD44-216	ENST00000525293	GPBAR1	Q8TDU6	330 aa		4.34	□□□□□ -1.71
CD44-216	ENST00000525293	ACSBG1	Q96GR2	724 aa		4.34	□□□□□ -1.71
CD44-216	ENST00000525293	METTL22	Q9BUU2	404 aa	Predicted RBP	4.34	□□□□□ -1.71
CD44-216	ENST00000525293	RNF19A	Q9NV58	838 aa		4.34	□□□□□ -1.71

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