RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 AEBP2Q6ZN18 517 aaPredicted RBP14.82□□□□□ -0.04
CD44-216ENST00000525293 CHIC1Q5VXU3 224 aa14.31□□□□□ -0.12
CD44-216ENST00000525293 PHF23Q9BUL5 403 aaPredicted RBP12.58□□□□□ -0.4
CD44-216ENST00000525293 SENP3Q9H4L4 574 aaPredicted RBP12.58□□□□□ -0.4
CD44-216ENST00000525293 FOXD1Q16676 465 aa11.8□□□□□ -0.52
CD44-216ENST00000525293 PLPPR3Q6T4P5 718 aa11.55□□□□□ -0.56
CD44-216ENST00000525293 POTEDQ86YR6 584 aa11.41□□□□□ -0.58
CD44-216ENST00000525293 PPP6R1Q9UPN7 881 aa11.17□□□□□ -0.62
CD44-216ENST00000525293 ADRA2BP18089 450 aa11.15□□□□□ -0.62
CD44-216ENST00000525293 MSH5O43196 834 aa11.11□□□□□ -0.63
CD44-216ENST00000525293 PIAS4Q8N2W9 510 aaPredicted RBP11.01□□□□□ -0.65
CD44-216ENST00000525293 SCAF1Q9H7N4 1312 aaKnown RBP10.18□□□□□ -0.78
CD44-216ENST00000525293 MAPK8IP2Q13387 824 aaPredicted RBP10.17□□□□□ -0.78
CD44-216ENST00000525293 PPP4R3CPQ6ZMV5 832 aa10.17□□□□□ -0.78
CD44-216ENST00000525293 DMRT2Q9Y5R5 561 aa10.02□□□□□ -0.81
CD44-216ENST00000525293 CNKSR2Q8WXI2 1034 aa9.91□□□□□ -0.82
CD44-216ENST00000525293 NCBP3Q53F19 620 aaKnown RBP9.85□□□□□ -0.83
CD44-216ENST00000525293 KCNA4P22459 653 aa9.76□□□□□ -0.85
CD44-216ENST00000525293 HOXD11P31277 338 aaPredicted RBP9.75□□□□□ -0.85
CD44-216ENST00000525293 RNF216Q9NWF9 866 aaPredicted RBP9.75□□□□□ -0.85
CD44-216ENST00000525293 CACNB1Q02641 598 aaPredicted RBP9.72□□□□□ -0.85
CD44-216ENST00000525293 NPM3O75607 178 aaKnown RBP9.71□□□□□ -0.86
CD44-216ENST00000525293 DCAF8L1A6NGE4 600 aa9.64□□□□□ -0.87
CD44-216ENST00000525293 RNF39Q9H2S5 420 aa9.48□□□□□ -0.89
CD44-216ENST00000525293 DNAJC5BQ9UF47 199 aa9.4□□□□□ -0.9
CD44-216ENST00000525293 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.31□□□□□ -0.92
CD44-216ENST00000525293 C1QBPQ07021 282 aaKnown RBP9.3□□□□□ -0.92
CD44-216ENST00000525293 SLC4A1APQ9BWU0 796 aaKnown RBP9.26□□□□□ -0.93
CD44-216ENST00000525293 SLC4A2P04920 1241 aa9.21□□□□□ -0.94
CD44-216ENST00000525293 U3KPZ7 1027 aaPredicted RBP9.13□□□□□ -0.95
CD44-216ENST00000525293 FOXD4L1Q9NU39 408 aa9.01□□□□□ -0.97
CD44-216ENST00000525293 ZBTB22O15209 634 aa8.97□□□□□ -0.97
CD44-216ENST00000525293 MYCNP04198 464 aaPredicted RBP8.96□□□□□ -0.98
CD44-216ENST00000525293 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.95□□□□□ -0.98
CD44-216ENST00000525293 HNRNPUL2Q1KMD3 747 aaKnown RBP8.95□□□□□ -0.98
CD44-216ENST00000525293 SPINK5Q9NQ38 1064 aaPredicted RBP8.94□□□□□ -0.98
CD44-216ENST00000525293 CAPN15O75808 1086 aa8.92□□□□□ -0.98
CD44-216ENST00000525293 SAMD1Q6SPF0 538 aaPredicted RBP8.91□□□□□ -0.98
CD44-216ENST00000525293 APLP2Q06481 763 aa8.89□□□□□ -0.99
CD44-216ENST00000525293 POTEHQ6S545 545 aa8.87□□□□□ -0.99
CD44-216ENST00000525293 TRHP20396 242 aaPredicted RBP8.85□□□□□ -0.99
CD44-216ENST00000525293 EHMT2Q96KQ7 1210 aa8.84□□□□□ -0.99
CD44-216ENST00000525293 CSRNP3Q8WYN3 585 aa8.8□□□□□ -1
CD44-216ENST00000525293 ZNF219Q9P2Y4 722 aaPredicted RBP8.8□□□□□ -1
CD44-216ENST00000525293 DSG3P32926 999 aa8.79□□□□□ -1
CD44-216ENST00000525293 ATF5Q9Y2D1 282 aaPredicted RBP8.77□□□□□ -1.01
CD44-216ENST00000525293 ABCB7O75027 752 aa8.74□□□□□ -1.01
CD44-216ENST00000525293 ATXN8OSP0DMR3 200 aa8.7□□□□□ -1.02
CD44-216ENST00000525293 POLA2Q14181 598 aa8.66□□□□□ -1.02
CD44-216ENST00000525293 ZBTB12Q9Y330 459 aaPredicted RBP8.46□□□□□ -1.06
CD44-216ENST00000525293 FBLN2P98095 1184 aa8.39□□□□□ -1.07
CD44-216ENST00000525293 MKRN4PQ13434 485 aaPredicted RBP8.36□□□□□ -1.07
CD44-216ENST00000525293 RBM42Q9BTD8 480 aaKnown RBP8.36□□□□□ -1.07
CD44-216ENST00000525293 OSCARQ8IYS5 282 aa8.35□□□□□ -1.07
CD44-216ENST00000525293 CHRDL2Q6WN34 429 aa8.31□□□□□ -1.08
CD44-216ENST00000525293 SPDYE2BA6NHP3 402 aa8.23□□□□□ -1.09
CD44-216ENST00000525293 SPDYE6P0CI01 402 aa8.23□□□□□ -1.09
CD44-216ENST00000525293 SPDYE2Q495Y8 402 aa8.23□□□□□ -1.09
CD44-216ENST00000525293 AKT1S1Q96B36 256 aa8.23□□□□□ -1.09
CD44-216ENST00000525293 ZNF692Q9BU19 519 aaPredicted RBP8.2□□□□□ -1.1
CD44-216ENST00000525293 REM2Q8IYK8 340 aaPredicted RBP8.17□□□□□ -1.1
CD44-216ENST00000525293 SP7Q8TDD2 431 aaPredicted RBP8.16□□□□□ -1.1
CD44-216ENST00000525293 SSUH2Q9Y2M2 353 aa8.14□□□□□ -1.11
CD44-216ENST00000525293 SPDYE4A6NLX3 237 aa8.1□□□□□ -1.11
CD44-216ENST00000525293 PABPN1Q86U42 306 aaKnown RBP eCLIP8.09□□□□□ -1.11
CD44-216ENST00000525293 PITPNM1O00562 1244 aa8.07□□□□□ -1.12
CD44-216ENST00000525293 PIP4P2Q8N4L2 257 aa8.05□□□□□ -1.12
CD44-216ENST00000525293 CLEC11AQ9Y240 323 aa8.04□□□□□ -1.12
CD44-216ENST00000525293 SPDYE1Q8NFV5 336 aaPredicted RBP8.03□□□□□ -1.12
CD44-216ENST00000525293 FKBP8Q14318 412 aa7.98□□□□□ -1.13
CD44-216ENST00000525293 HAX1O00165 279 aa7.97□□□□□ -1.13
CD44-216ENST00000525293 FXR2P51116 673 aaKnown RBP eCLIP7.96□□□□□ -1.14
CD44-216ENST00000525293 PRR29P0C7W0 189 aa7.93□□□□□ -1.14
CD44-216ENST00000525293 EVX2Q03828 476 aa7.91□□□□□ -1.14
CD44-216ENST00000525293 PROM2Q8N271 834 aa7.91□□□□□ -1.14
CD44-216ENST00000525293 STAG3Q9UJ98 1225 aa7.9□□□□□ -1.14
CD44-216ENST00000525293 PRKAR2AP13861 404 aaKnown RBP7.88□□□□□ -1.15
CD44-216ENST00000525293 CHADLQ6NUI6 762 aa7.86□□□□□ -1.15
CD44-216ENST00000525293 CREBZFQ9NS37 354 aa7.78□□□□□ -1.16
CD44-216ENST00000525293 FARP1Q9Y4F1 1045 aaPredicted RBP7.74□□□□□ -1.17
CD44-216ENST00000525293 MIER1Q8N108 512 aa7.72□□□□□ -1.17
CD44-216ENST00000525293 C19orf67A6NJJ6 358 aa7.71□□□□□ -1.18
CD44-216ENST00000525293 FBXO3Q9UK99 471 aa7.71□□□□□ -1.18
CD44-216ENST00000525293 GABBR2O75899 941 aa7.68□□□□□ -1.18
CD44-216ENST00000525293 PLCD3Q8N3E9 789 aa7.68□□□□□ -1.18
CD44-216ENST00000525293 PLEKHG5O94827 1062 aa7.67□□□□□ -1.18
CD44-216ENST00000525293 MNX1P50219 401 aaPredicted RBP7.67□□□□□ -1.18
CD44-216ENST00000525293 NPM1P06748 294 aaKnown RBP eCLIP7.65□□□□□ -1.18
CD44-216ENST00000525293 LHX8Q68G74 356 aa7.65□□□□□ -1.18
CD44-216ENST00000525293 CD44P16070 742 aaKnown RBP7.64□□□□□ -1.19
CD44-216ENST00000525293 VASPP50552 380 aaPredicted RBP7.61□□□□□ -1.19
CD44-216ENST00000525293 ZRANB1Q9UGI0 708 aa7.58□□□□□ -1.2
CD44-216ENST00000525293 ZBTB47Q9UFB7 747 aaPredicted RBP7.57□□□□□ -1.2
CD44-216ENST00000525293 PAK3O75914 559 aaPredicted RBP7.56□□□□□ -1.2
CD44-216ENST00000525293 POTEIP0CG38 1075 aa7.55□□□□□ -1.2
CD44-216ENST00000525293 KLHL34Q8N239 644 aa7.55□□□□□ -1.2
CD44-216ENST00000525293 TSPYL2Q9H2G4 693 aaPredicted RBP7.55□□□□□ -1.2
CD44-216ENST00000525293 RASEFQ8IZ41 740 aa7.53□□□□□ -1.2
CD44-216ENST00000525293 NUBP1P53384 320 aa7.52□□□□□ -1.21
CD44-216ENST00000525293 IFNLR1Q8IU57 520 aaPredicted RBP7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms