RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 GLIS2Q9BZE0 524 aaPredicted RBP23.95■■□□□ 1.42
LIME1-205ENST00000480139 CLRN2A0PK11 232 aa23.94■■□□□ 1.42
LIME1-205ENST00000480139 TNFAIP1Q13829 316 aa23.94■■□□□ 1.42
LIME1-205ENST00000480139 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.94■■□□□ 1.421e-9■■■■■ 29
LIME1-205ENST00000480139 PPP4R2Q9NY27 417 aa23.94■■□□□ 1.42
LIME1-205ENST00000480139 PPP2R3BQ9Y5P8 575 aa23.94■■□□□ 1.42
LIME1-205ENST00000480139 BTDP43251 543 aa23.93■■□□□ 1.42
LIME1-205ENST00000480139 USP48Q86UV5 1035 aa23.93■■□□□ 1.42
LIME1-205ENST00000480139 MAGEB6Q8N7X4 407 aa23.93■■□□□ 1.42
LIME1-205ENST00000480139 KBTBD3Q8NAB2 608 aa23.93■■□□□ 1.42
LIME1-205ENST00000480139 TMOD2Q9NZR1 351 aa23.93■■□□□ 1.42
LIME1-205ENST00000480139 ADM5C9JUS6 153 aa23.92■■□□□ 1.42
LIME1-205ENST00000480139 PDE4AP27815 886 aa23.92■■□□□ 1.42
LIME1-205ENST00000480139 SLC9C2Q5TAH2 1124 aa23.92■■□□□ 1.42
LIME1-205ENST00000480139 CDC42EP5Q6NZY7 148 aa23.92■■□□□ 1.42
LIME1-205ENST00000480139 VEZTQ9HBM0 779 aa23.92■■□□□ 1.42
LIME1-205ENST00000480139 RFX7Q2KHR2 1363 aa23.91■■□□□ 1.42
LIME1-205ENST00000480139 PDE6AP16499 860 aa23.91■■□□□ 1.42
LIME1-205ENST00000480139 CYP7A1P22680 504 aa23.91■■□□□ 1.42
LIME1-205ENST00000480139 PPP4CP60510 307 aa23.91■■□□□ 1.42
LIME1-205ENST00000480139 ZSCAN25Q6NSZ9 544 aa23.91■■□□□ 1.42
LIME1-205ENST00000480139 ADGRA1Q86SQ6 560 aa23.91■■□□□ 1.42
LIME1-205ENST00000480139 CERS3Q8IU89 383 aa23.91■■□□□ 1.42
LIME1-205ENST00000480139 NOL10Q9BSC4 688 aaKnown RBP23.91■■□□□ 1.42
LIME1-205ENST00000480139 FOCADQ5VW36 1801 aa23.9■■□□□ 1.42
LIME1-205ENST00000480139 TCRBV5S4A2TA0A5A2 114 aa23.9■■□□□ 1.42
LIME1-205ENST00000480139 TRAF5O00463 557 aa23.9■■□□□ 1.42
LIME1-205ENST00000480139 BAG3O95817 575 aa23.9■■□□□ 1.42
LIME1-205ENST00000480139 ADD2P35612 726 aa23.9■■□□□ 1.42
LIME1-205ENST00000480139 TNNI2P48788 182 aa23.9■■□□□ 1.42
LIME1-205ENST00000480139 RHBDL3P58872 404 aa23.9■■□□□ 1.42
LIME1-205ENST00000480139 FAM83AQ86UY5 434 aa23.9■■□□□ 1.42
LIME1-205ENST00000480139 DEFB129Q9H1M3 183 aa23.9■■□□□ 1.42
LIME1-205ENST00000480139 USP40Q9NVE5 1235 aa23.9■■□□□ 1.42
LIME1-205ENST00000480139 PLCG2P16885 1265 aa23.89■■□□□ 1.41
LIME1-205ENST00000480139 LRRFIP1Q32MZ4 808 aaKnown RBP23.89■■□□□ 1.41
LIME1-205ENST00000480139 TICAM2Q86XR7 235 aa23.89■■□□□ 1.41
LIME1-205ENST00000480139 IDI2Q9BXS1 227 aa23.89■■□□□ 1.41
LIME1-205ENST00000480139 CDK5RAP2Q96SN8 1893 aa23.89■■□□□ 1.41
LIME1-205ENST00000480139 RPAP1Q9BWH6 1393 aaPredicted RBP23.89■■□□□ 1.41
LIME1-205ENST00000480139 ZNF532Q9HCE3 1301 aa23.88■■□□□ 1.41
LIME1-205ENST00000480139 UBE3CQ15386 1083 aa23.88■■□□□ 1.41
LIME1-205ENST00000480139 EVI5LQ96CN4 794 aa23.88■■□□□ 1.41
LIME1-205ENST00000480139 CDCA5Q96FF9 252 aa23.88■■□□□ 1.41
LIME1-205ENST00000480139 CNTNAP1P78357 1384 aa23.88■■□□□ 1.41
LIME1-205ENST00000480139 AK9Q5TCS8 1911 aa23.87■■□□□ 1.41
LIME1-205ENST00000480139 NPM3O75607 178 aaKnown RBP23.87■■□□□ 1.41
LIME1-205ENST00000480139 ZFYP08048 801 aaPredicted RBP23.87■■□□□ 1.41
LIME1-205ENST00000480139 APLP1P51693 650 aa23.87■■□□□ 1.41
LIME1-205ENST00000480139 RASA3Q14644 834 aa23.87■■□□□ 1.41
LIME1-205ENST00000480139 AATFQ9NY61 560 aaKnown RBP eCLIP23.87■■□□□ 1.41
LIME1-205ENST00000480139 TCP10L2B9ZVM9 353 aa23.86■■□□□ 1.41
LIME1-205ENST00000480139 WDHD1O75717 1129 aaPredicted RBP23.86■■□□□ 1.41
LIME1-205ENST00000480139 CACNB3P54284 484 aa23.86■■□□□ 1.41
LIME1-205ENST00000480139 SCAF8Q9UPN6 1271 aaKnown RBP23.86■■□□□ 1.41
LIME1-205ENST00000480139 ENTPD3O75355 529 aa23.85■■□□□ 1.41
LIME1-205ENST00000480139 FMR1Q06787 632 aaKnown RBP eCLIP23.85■■□□□ 1.41
LIME1-205ENST00000480139 NFIAQ12857 509 aa23.85■■□□□ 1.41
LIME1-205ENST00000480139 FAM151AQ8WW52 585 aa23.85■■□□□ 1.41
LIME1-205ENST00000480139 FSD1Q9BTV5 496 aa23.85■■□□□ 1.41
LIME1-205ENST00000480139 FAM198AQ9UFP1 575 aa23.85■■□□□ 1.41
LIME1-205ENST00000480139 COL2A1P02458 1487 aaPredicted RBP23.84■■□□□ 1.41
LIME1-205ENST00000480139 RNF113AO15541 343 aaKnown RBP23.84■■□□□ 1.41
LIME1-205ENST00000480139 HSPA6P17066 643 aa23.84■■□□□ 1.41
LIME1-205ENST00000480139 DLK2Q6UY11 383 aa23.84■■□□□ 1.41
LIME1-205ENST00000480139 MIGA1Q8NAN2 632 aa23.84■■□□□ 1.41
LIME1-205ENST00000480139 SH3RF3Q8TEJ3 882 aaPredicted RBP23.84■■□□□ 1.41
LIME1-205ENST00000480139 TEPSINQ96N21 525 aa23.84■■□□□ 1.41
LIME1-205ENST00000480139 RIOK1Q9BRS2 568 aaKnown RBP23.84■■□□□ 1.41
LIME1-205ENST00000480139 PAPPA2Q9BXP8 1791 aa23.83■■□□□ 1.41
LIME1-205ENST00000480139 MAGEB6P1A0A0J9YX57 407 aa23.83■■□□□ 1.41
LIME1-205ENST00000480139 CELF2O95319 508 aaKnown RBP23.83■■□□□ 1.41
LIME1-205ENST00000480139 CST9Q5W186 159 aa23.83■■□□□ 1.41
LIME1-205ENST00000480139 TEX11Q8IYF3 940 aa23.83■■□□□ 1.41
LIME1-205ENST00000480139 TMEM88BA6NKF7 163 aa23.82■■□□□ 1.4
LIME1-205ENST00000480139 NF2P35240 595 aa23.82■■□□□ 1.4
LIME1-205ENST00000480139 RGS3P49796 1198 aa23.82■■□□□ 1.4
LIME1-205ENST00000480139 DYNLL1P63167 89 aaKnown RBP23.82■■□□□ 1.4
LIME1-205ENST00000480139 SUPT20HL1Q3ZLR7 823 aa23.82■■□□□ 1.4
LIME1-205ENST00000480139 TTC22Q5TAA0 569 aa23.82■■□□□ 1.4
LIME1-205ENST00000480139 APPBP2Q92624 585 aa23.82■■□□□ 1.4
LIME1-205ENST00000480139 TMEM39BQ9GZU3 492 aa23.82■■□□□ 1.4
LIME1-205ENST00000480139 CREBZFQ9NS37 354 aa23.82■■□□□ 1.4
LIME1-205ENST00000480139 SSC5DA1L4H1 1573 aa23.82■■□□□ 1.4
LIME1-205ENST00000480139 FKBP1BP68106 108 aa23.81■■□□□ 1.4
LIME1-205ENST00000480139 DDX4Q9NQI0 724 aaKnown RBP23.81■■□□□ 1.4
LIME1-205ENST00000480139 ATRNL1Q5VV63 1379 aa23.8■■□□□ 1.4
LIME1-205ENST00000480139 TRIM6-TRIM34B2RNG4 842 aa23.8■■□□□ 1.4
LIME1-205ENST00000480139 CHGBP05060 677 aa23.8■■□□□ 1.4
LIME1-205ENST00000480139 PRAMEF18Q5VWM3 479 aa23.8■■□□□ 1.4
LIME1-205ENST00000480139 HOOK2Q96ED9 719 aa23.8■■□□□ 1.4
LIME1-205ENST00000480139 ZNF408Q9H9D4 720 aa23.8■■□□□ 1.4
LIME1-205ENST00000480139 DDX60LQ5H9U9 1706 aaKnown RBP23.79■■□□□ 1.4
LIME1-205ENST00000480139 TCP10Q12799 353 aa23.79■■□□□ 1.4
LIME1-205ENST00000480139 SLFNL1Q499Z3 407 aa23.79■■□□□ 1.4
LIME1-205ENST00000480139 NBPF12Q5TAG4 269 aaPredicted RBP23.79■■□□□ 1.4
LIME1-205ENST00000480139 GBA2Q9HCG7 927 aaPredicted RBP23.79■■□□□ 1.4
LIME1-205ENST00000480139 GSPT1P15170 499 aaKnown RBP23.78■■□□□ 1.4
LIME1-205ENST00000480139 PICALMQ13492 652 aa23.78■■□□□ 1.4
LIME1-205ENST00000480139 ZMYM1Q5SVZ6 1142 aa23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms