RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 COMTD1Q86VU5 262 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 ANGPTL5Q86XS5 388 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 IQCF2Q8IXL9 164 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 MUC15Q8N387 334 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 TOMM5Q8N4H5 51 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 RPRMLQ8N4K4 120 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 TCTEX1D1Q8N7M0 179 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 PXT1Q8NFP0 134 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 OR1M1Q8NGA1 313 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 OR8B3Q8NGG8 313 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 OR13D1Q8NGV5 346 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 OR10J5Q8NHC4 309 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 SLC25A40Q8TBP6 338 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 TNFAIP8L1Q8WVP5 186 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 ASB13Q8WXK3 278 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 OR5P3Q8WZ94 311 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 TMEM203Q969S6 136 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 UBE2WQ96B02 151 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 CMBLQ96DG6 245 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 MRAP2Q96G30 205 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 DIRAS2Q96HU8 199 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 TSPAN32Q96QS1 320 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 OR8B2Q96RD0 313 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 CCL19Q99731 98 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 PRRT1Q99946 306 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 DHRS9Q9BPW9 319 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 PRSS27Q9BQR3 290 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 C7orf50Q9BRJ6 194 aaKnown RBP1.12□□□□□ -2.23
LIMA1-209ENST00000552008 DCUN1D5Q9BTE7 237 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 ADAT1Q9BUB4 502 aaKnown RBP1.12□□□□□ -2.23
LIMA1-209ENST00000552008 CCDC32Q9BV29 185 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 CHST6Q9GZX3 395 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 AICDAQ9GZX7 198 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 DCSTAMPQ9H295 470 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 FBXL15Q9H469 300 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 METTL17Q9H7H0 456 aaPredicted RBP1.12□□□□□ -2.23
LIMA1-209ENST00000552008 TREM1Q9NP99 234 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 ENY2Q9NPA8 101 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 GPR84Q9NQS5 396 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 CBLN4Q9NTU7 201 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 NDUFB11Q9NX14 153 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 MED29Q9NX70 200 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 ZNF586Q9NXT0 402 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 TAAR3PQ9P1P4 343 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 COMMD3Q9UBI1 195 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 SDK2Q58EX2 2172 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 PLXNA4Q9HCM2 1894 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 TSC2P49815 1807 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 YLPM1P49750 1951 aaKnown RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 IGKV1D-42A0A075B6H8 117 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 TRBV24-1A0A075B6N3 115 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 MEIKINA0A087WXM9 373 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 LOC107986453A0A1B0GWG9 222 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 OOSP1A8MZH6 123 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 B4DSR2 109 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 HSBP1L1C9JCN9 74 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 GABARAPH6UMI1 98 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 H7C1C5 153 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 J3QLI3 93 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 M0QZK8 103 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 TCF21O43680 179 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 SSNA1O43805 119 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 OR7C1O76099 320 aaPredicted RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 MT-CO2P00403 227 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 APOA2P02652 100 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 AKAIN1P0CW23 69 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 TRAPPC2P0DI81 140 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 TRAPPC2BP0DI82 140 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 PSKH1P11801 424 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 CTLA4P16410 223 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 CNTFRP26992 372 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 BLVRBP30043 206 aaPredicted RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 SRP14P37108 136 aaKnown RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 SNCAP37840 140 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 CD200P41217 278 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 EIF2B2P49770 351 aaKnown RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 RAB13P51153 203 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 EDDM3BP56851 147 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 RAB4BP61018 213 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 FGF12P61328 243 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 LSM3P62310 102 aaKnown RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 RPS25P62851 125 aaKnown RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 HIST1H3AP68431 136 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 RPL19P84098 196 aaKnown RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 BSPH1Q075Z2 132 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 TMEM267Q0VDI3 215 aaPredicted RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 CDK5R1Q15078 307 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 CDK10Q15131 360 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 PLGLAQ15195 96 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 SURF2Q15527 256 aaPredicted RBP1.11□□□□□ -2.23
LIMA1-209ENST00000552008 MSMO1Q15800 293 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 RTL8BQ17RB0 113 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 KRTAP25-1Q3LHN0 102 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 SCGB2B2Q4G0G5 96 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 TMEM155Q4W5P6 130 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 MESTQ5EB52 335 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 NCMAPQ5T1S8 102 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 HIST2H3PS2Q5TEC6 136 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 OR2T2Q6IF00 324 aa1.11□□□□□ -2.23
LIMA1-209ENST00000552008 SFXN4Q6P4A7 337 aa1.11□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms