RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 AEBP2Q6ZN18 517 aaPredicted RBP17.55■□□□□ 0.4
LIMA1-209ENST00000552008 CHIC1Q5VXU3 224 aa16.42■□□□□ 0.22
LIMA1-209ENST00000552008 SENP3Q9H4L4 574 aaPredicted RBP15.07■□□□□ 0
LIMA1-209ENST00000552008 PHF23Q9BUL5 403 aaPredicted RBP14.79□□□□□ -0.04
LIMA1-209ENST00000552008 FOXD1Q16676 465 aa14.09□□□□□ -0.15
LIMA1-209ENST00000552008 POTEDQ86YR6 584 aa13.86□□□□□ -0.19
LIMA1-209ENST00000552008 MSH5O43196 834 aa13.38□□□□□ -0.27
LIMA1-209ENST00000552008 PIAS4Q8N2W9 510 aaPredicted RBP13.07□□□□□ -0.32
LIMA1-209ENST00000552008 PPP6R1Q9UPN7 881 aa12.8□□□□□ -0.36
LIMA1-209ENST00000552008 PLPPR3Q6T4P5 718 aa12.75□□□□□ -0.37
LIMA1-209ENST00000552008 ADRA2BP18089 450 aa12.74□□□□□ -0.37
LIMA1-209ENST00000552008 DMRT2Q9Y5R5 561 aa11.86□□□□□ -0.51
LIMA1-209ENST00000552008 MAPK8IP2Q13387 824 aaPredicted RBP11.85□□□□□ -0.51
LIMA1-209ENST00000552008 CACNB1Q02641 598 aaPredicted RBP11.78□□□□□ -0.52
LIMA1-209ENST00000552008 SCAF1Q9H7N4 1312 aaKnown RBP11.67□□□□□ -0.54
LIMA1-209ENST00000552008 DCAF8L1A6NGE4 600 aa11.44□□□□□ -0.58
LIMA1-209ENST00000552008 RNF39Q9H2S5 420 aa11.36□□□□□ -0.59
LIMA1-209ENST00000552008 HOXD11P31277 338 aaPredicted RBP11.24□□□□□ -0.61
LIMA1-209ENST00000552008 C1QBPQ07021 282 aaKnown RBP11.17□□□□□ -0.62
LIMA1-209ENST00000552008 PPP4R3CPQ6ZMV5 832 aa11.12□□□□□ -0.63
LIMA1-209ENST00000552008 RNF216Q9NWF9 866 aaPredicted RBP11.03□□□□□ -0.64
LIMA1-209ENST00000552008 CNKSR2Q8WXI2 1034 aa11.02□□□□□ -0.65
LIMA1-209ENST00000552008 DNAJC5BQ9UF47 199 aa10.93□□□□□ -0.66
LIMA1-209ENST00000552008 POTEHQ6S545 545 aa10.77□□□□□ -0.69
LIMA1-209ENST00000552008 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.73□□□□□ -0.69
LIMA1-209ENST00000552008 NCBP3Q53F19 620 aaKnown RBP10.56□□□□□ -0.72
LIMA1-209ENST00000552008 DSG3P32926 999 aa10.47□□□□□ -0.73
LIMA1-209ENST00000552008 CAPN15O75808 1086 aa10.45□□□□□ -0.74
LIMA1-209ENST00000552008 U3KPZ7 1027 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-209ENST00000552008 SPINK5Q9NQ38 1064 aaPredicted RBP10.43□□□□□ -0.74
LIMA1-209ENST00000552008 NPM3O75607 178 aaKnown RBP10.39□□□□□ -0.75
LIMA1-209ENST00000552008 ABCB7O75027 752 aa10.18□□□□□ -0.78
LIMA1-209ENST00000552008 TRHP20396 242 aaPredicted RBP10.17□□□□□ -0.78
LIMA1-209ENST00000552008 ZNF219Q9P2Y4 722 aaPredicted RBP10.13□□□□□ -0.79
LIMA1-209ENST00000552008 APLP2Q06481 763 aa10.12□□□□□ -0.79
LIMA1-209ENST00000552008 SLC4A2P04920 1241 aa10.04□□□□□ -0.8
LIMA1-209ENST00000552008 RBM42Q9BTD8 480 aaKnown RBP10.03□□□□□ -0.8
LIMA1-209ENST00000552008 CHRDL2Q6WN34 429 aa9.99□□□□□ -0.81
LIMA1-209ENST00000552008 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.98□□□□□ -0.81
LIMA1-209ENST00000552008 HNRNPUL2Q1KMD3 747 aaKnown RBP9.98□□□□□ -0.81
LIMA1-209ENST00000552008 SAMD1Q6SPF0 538 aaPredicted RBP9.9□□□□□ -0.82
LIMA1-209ENST00000552008 SP7Q8TDD2 431 aaPredicted RBP9.87□□□□□ -0.83
LIMA1-209ENST00000552008 POLA2Q14181 598 aa9.78□□□□□ -0.84
LIMA1-209ENST00000552008 KCNA4P22459 653 aa9.77□□□□□ -0.85
LIMA1-209ENST00000552008 AKT1S1Q96B36 256 aa9.69□□□□□ -0.86
LIMA1-209ENST00000552008 PIP4P2Q8N4L2 257 aa9.65□□□□□ -0.86
LIMA1-209ENST00000552008 MYCNP04198 464 aaPredicted RBP9.63□□□□□ -0.87
LIMA1-209ENST00000552008 HAX1O00165 279 aa9.62□□□□□ -0.87
LIMA1-209ENST00000552008 REM2Q8IYK8 340 aaPredicted RBP9.6□□□□□ -0.87
LIMA1-209ENST00000552008 ZBTB12Q9Y330 459 aaPredicted RBP9.55□□□□□ -0.88
LIMA1-209ENST00000552008 PITPNM1O00562 1244 aa9.51□□□□□ -0.89
LIMA1-209ENST00000552008 FXR2P51116 673 aaKnown RBP eCLIP9.51□□□□□ -0.89
LIMA1-209ENST00000552008 OSCARQ8IYS5 282 aa9.49□□□□□ -0.89
LIMA1-209ENST00000552008 EVX2Q03828 476 aa9.44□□□□□ -0.9
LIMA1-209ENST00000552008 ATF5Q9Y2D1 282 aaPredicted RBP9.43□□□□□ -0.9
LIMA1-209ENST00000552008 FOXD4L1Q9NU39 408 aa9.27□□□□□ -0.93
LIMA1-209ENST00000552008 PRKAR2AP13861 404 aaKnown RBP9.26□□□□□ -0.93
LIMA1-209ENST00000552008 LHX8Q68G74 356 aa9.26□□□□□ -0.93
LIMA1-209ENST00000552008 C19orf67A6NJJ6 358 aa9.23□□□□□ -0.93
LIMA1-209ENST00000552008 SPDYE2BA6NHP3 402 aa9.21□□□□□ -0.94
LIMA1-209ENST00000552008 GABBR2O75899 941 aa9.21□□□□□ -0.94
LIMA1-209ENST00000552008 SPDYE6P0CI01 402 aa9.21□□□□□ -0.94
LIMA1-209ENST00000552008 SPDYE2Q495Y8 402 aa9.21□□□□□ -0.94
LIMA1-209ENST00000552008 CLEC11AQ9Y240 323 aa9.19□□□□□ -0.94
LIMA1-209ENST00000552008 SPDYE1Q8NFV5 336 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-209ENST00000552008 SLC4A1APQ9BWU0 796 aaKnown RBP9.14□□□□□ -0.95
LIMA1-209ENST00000552008 FBLN2P98095 1184 aa9.12□□□□□ -0.95
LIMA1-209ENST00000552008 PLSCR2Q9NRY7 297 aa9.09□□□□□ -0.95
LIMA1-209ENST00000552008 CHADLQ6NUI6 762 aa9.06□□□□□ -0.96
LIMA1-209ENST00000552008 ZNF692Q9BU19 519 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-209ENST00000552008 SSUH2Q9Y2M2 353 aa9.03□□□□□ -0.96
LIMA1-209ENST00000552008 ATXN8OSP0DMR3 200 aa9.02□□□□□ -0.97
LIMA1-209ENST00000552008 POTEIP0CG38 1075 aa9□□□□□ -0.97
LIMA1-209ENST00000552008 ZBTB22O15209 634 aa8.97□□□□□ -0.97
LIMA1-209ENST00000552008 MKRN4PQ13434 485 aaPredicted RBP8.97□□□□□ -0.97
LIMA1-209ENST00000552008 PRR29P0C7W0 189 aa8.96□□□□□ -0.98
LIMA1-209ENST00000552008 CD44P16070 742 aaKnown RBP8.94□□□□□ -0.98
LIMA1-209ENST00000552008 CLCN6P51797 869 aa8.89□□□□□ -0.99
LIMA1-209ENST00000552008 PABPN1Q86U42 306 aaKnown RBP eCLIP8.88□□□□□ -0.99
LIMA1-209ENST00000552008 DCBLD2Q96PD2 775 aa8.88□□□□□ -0.99
LIMA1-209ENST00000552008 FARP1Q9Y4F1 1045 aaPredicted RBP8.87□□□□□ -0.99
LIMA1-209ENST00000552008 ZNF579Q8NAF0 562 aaKnown RBP8.77□□□□□ -1.01
LIMA1-209ENST00000552008 OTUD5Q96G74 571 aa8.76□□□□□ -1.01
LIMA1-209ENST00000552008 POTEMA6NI47 508 aa8.74□□□□□ -1.01
LIMA1-209ENST00000552008 ZRANB1Q9UGI0 708 aa8.74□□□□□ -1.01
LIMA1-209ENST00000552008 GALR2O43603 387 aaPredicted RBP8.7□□□□□ -1.02
LIMA1-209ENST00000552008 POTEGQ6S5H5 508 aa8.7□□□□□ -1.02
LIMA1-209ENST00000552008 POTEB2H3BUK9 544 aa8.69□□□□□ -1.02
LIMA1-209ENST00000552008 CREBZFQ9NS37 354 aa8.62□□□□□ -1.03
LIMA1-209ENST00000552008 PCDH10Q9P2E7 1040 aa8.62□□□□□ -1.03
LIMA1-209ENST00000552008 PAK3O75914 559 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-209ENST00000552008 PHF12Q96QT6 1004 aa8.58□□□□□ -1.04
LIMA1-209ENST00000552008 PELP1Q8IZL8 1130 aaKnown RBP8.57□□□□□ -1.04
LIMA1-209ENST00000552008 STAG3Q9UJ98 1225 aa8.54□□□□□ -1.04
LIMA1-209ENST00000552008 METRNQ9UJH8 293 aa8.53□□□□□ -1.04
LIMA1-209ENST00000552008 POTEJP0CG39 1038 aa8.49□□□□□ -1.05
LIMA1-209ENST00000552008 MAMSTRQ6ZN01 415 aa8.49□□□□□ -1.05
LIMA1-209ENST00000552008 C7P10643 843 aa8.48□□□□□ -1.05
LIMA1-209ENST00000552008 ASTLQ6HA08 431 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-209ENST00000552008 SLC39A7Q92504 469 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms