RNA–Protein interactions for RNA: ENST00000530748.5

CTNND1-227, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-227ENST00000530748 HIST1H2BNQ99877 126 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 HIST1H2BMQ99879 126 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 NHP2Q9NX24 153 aaKnown RBP6.92□□□□□ -1.3
CTNND1-227ENST00000530748 RNF114Q9Y508 228 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 LINC00473A8K010 186 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 NDUFS8O00217 210 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 TMEM95Q3KNT9 176 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 LYPD2Q6UXB3 125 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 IFI27L1Q96BM0 104 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 COL4A6Q14031 1691 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 C5orf63A6NC05 138 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 LYL1P12980 280 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 PCP4P48539 62 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 Q6ZS92 163 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 CRIM1Q9NZV1 1036 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 SIGLEC9Q9Y336 463 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 ARID1BQ8NFD5 2236 aaPredicted RBP6.92□□□□□ -1.3
CTNND1-227ENST00000530748 IGHV3-73A0A0B4J1V6 119 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 PLNP26678 52 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 HGFACQ04756 655 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 HSD52Q0P140 79 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 BRD3OSQ6XYD6 125 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 MGAMO43451 1857 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 J3QKU1 62 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 NDPQ00604 133 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 SRSF6Q13247 344 aaKnown RBP6.92□□□□□ -1.3
CTNND1-227ENST00000530748 TMEM86BQ8N661 226 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 ATG2BQ96BY7 2078 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 PIKFYVEQ9Y2I7 2098 aa6.92□□□□□ -1.3
CTNND1-227ENST00000530748 IGHV3-64A0A075B6Q5 118 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 TRAV12-3A0A0B4J271 114 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 FXYD7P58549 80 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 CKS1BP61024 79 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 DMRTA1Q5VZB9 504 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 LCN12Q6JVE5 192 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 FNDC4Q9H6D8 234 aaPredicted RBP6.91□□□□□ -1.3
CTNND1-227ENST00000530748 A0A1B0GV72 72 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 TMEM238C9JI98 176 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 M0R2P5 195 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 CXCL1P09341 107 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 RPL35AP18077 110 aaKnown RBP6.91□□□□□ -1.3
CTNND1-227ENST00000530748 LINC00158P58513 81 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 ASCL4Q6XD76 172 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 C11orf68Q9H3H3 251 aaKnown RBP6.91□□□□□ -1.3
CTNND1-227ENST00000530748 SELENOKQ9Y6D0 94 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 TSC2P49815 1807 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 TRAV8-2A0A0B4J237 113 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 GLRX5Q86SX6 157 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 PIP4P2Q8N4L2 257 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 SRSF4Q08170 494 aaKnown RBP6.91□□□□□ -1.3
CTNND1-227ENST00000530748 S100A7L2Q5SY68 101 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 ZNF474Q6S9Z5 364 aaPredicted RBP6.91□□□□□ -1.3
CTNND1-227ENST00000530748 TEX43Q6ZNM6 134 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 PLEKHB2Q96CS7 222 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 KLHDC3Q9BQ90 382 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 LINC00587B1AMM8 73 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 PRB4P10163 310 aaPredicted RBP6.91□□□□□ -1.3
CTNND1-227ENST00000530748 KLHL30-AS1Q8NEE0 82 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 RASL10AQ92737 203 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 DERL1Q9BUN8 251 aa6.91□□□□□ -1.3
CTNND1-227ENST00000530748 TRBV24-1A0A075B6N3 115 aa6.9□□□□□ -1.3
CTNND1-227ENST00000530748 TRGV1A0A0A0MS02 117 aa6.9□□□□□ -1.3
CTNND1-227ENST00000530748 ITGB1BP1O14713 200 aa6.9□□□□□ -1.3
CTNND1-227ENST00000530748 NTF4P34130 210 aa6.9□□□□□ -1.3
CTNND1-227ENST00000530748 TDGF1P3P51864 188 aa6.9□□□□□ -1.3
CTNND1-227ENST00000530748 RPL36AP83881 106 aaKnown RBP6.9□□□□□ -1.3
CTNND1-227ENST00000530748 Q8TCH9 128 aa6.9□□□□□ -1.3
CTNND1-227ENST00000530748 RPL36ALQ969Q0 106 aaKnown RBP6.9□□□□□ -1.3
CTNND1-227ENST00000530748 E7EQL1 145 aa6.9□□□□□ -1.3
CTNND1-227ENST00000530748 NCR2O95944 276 aa6.9□□□□□ -1.3
CTNND1-227ENST00000530748 NUP35Q8NFH5 326 aa6.9□□□□□ -1.3
CTNND1-227ENST00000530748 GFRA4Q9GZZ7 299 aa6.9□□□□□ -1.3
CTNND1-227ENST00000530748 MSRB2Q9Y3D2 182 aa6.9□□□□□ -1.3
CTNND1-227ENST00000530748 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.9□□□□□ -1.31
CTNND1-227ENST00000530748 HIST3H2BBQ8N257 126 aa6.9□□□□□ -1.31
CTNND1-227ENST00000530748 TMEM75Q8N9X5 138 aa6.9□□□□□ -1.31
CTNND1-227ENST00000530748 FCN3O75636 299 aa6.9□□□□□ -1.31
CTNND1-227ENST00000530748 RNASE2P10153 161 aaKnown RBP6.9□□□□□ -1.31
CTNND1-227ENST00000530748 ERCC8Q13216 396 aa6.9□□□□□ -1.31
CTNND1-227ENST00000530748 ATXN8Q156A1 80 aa6.9□□□□□ -1.31
CTNND1-227ENST00000530748 CD300EQ496F6 205 aaPredicted RBP6.9□□□□□ -1.31
CTNND1-227ENST00000530748 NDUFAF3Q9BU61 184 aa6.9□□□□□ -1.31
CTNND1-227ENST00000530748 CCDC88CQ9P219 2028 aa6.9□□□□□ -1.31
CTNND1-227ENST00000530748 GATA3P23771 443 aa6.89□□□□□ -1.31
CTNND1-227ENST00000530748 LCNL1Q6ZST4 164 aa6.89□□□□□ -1.31
CTNND1-227ENST00000530748 LINC01551Q86U37 167 aa6.89□□□□□ -1.31
CTNND1-227ENST00000530748 C1QTNF4Q9BXJ3 329 aa6.89□□□□□ -1.31
CTNND1-227ENST00000530748 SRRM4A7MD48 611 aaKnown RBP6.89□□□□□ -1.31
CTNND1-227ENST00000530748 C15orf62A8K5M9 175 aa6.89□□□□□ -1.31
CTNND1-227ENST00000530748 VCYO14598 125 aa6.89□□□□□ -1.31
CTNND1-227ENST00000530748 LSM4Q9Y4Z0 139 aaKnown RBP6.89□□□□□ -1.31
CTNND1-227ENST00000530748 FNDC1Q4ZHG4 1894 aaPredicted RBP6.89□□□□□ -1.31
CTNND1-227ENST00000530748 SEC11AP67812 179 aa6.89□□□□□ -1.31
CTNND1-227ENST00000530748 FAM90A2PQ658T7 463 aa6.89□□□□□ -1.31
CTNND1-227ENST00000530748 RNF144BQ7Z419 303 aa6.89□□□□□ -1.31
CTNND1-227ENST00000530748 RPRMLQ8N4K4 120 aa6.89□□□□□ -1.31
CTNND1-227ENST00000530748 HIST1H2BLQ99880 126 aa6.89□□□□□ -1.31
CTNND1-227ENST00000530748 ZNF876PQ49A33 203 aa6.89□□□□□ -1.31
CTNND1-227ENST00000530748 Q86TA4 180 aa6.89□□□□□ -1.31
CTNND1-227ENST00000530748 FAM110DQ8TAY7 271 aaPredicted RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 231.4 ms