RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 RNASE7Q9H1E1 156 aaKnown RBP10.87□□□□□ -0.67
COL6A3-212ENST00000491769 CD5P06127 495 aa10.87□□□□□ -0.67
COL6A3-212ENST00000491769 MINOS1Q5TGZ0 78 aa10.87□□□□□ -0.67
COL6A3-212ENST00000491769 ZNF497Q6ZNH5 498 aa10.87□□□□□ -0.67
COL6A3-212ENST00000491769 MINOS1-NBL1R4GNA1 71 aa10.87□□□□□ -0.67
COL6A3-212ENST00000491769 SRRM4A7MD48 611 aaKnown RBP10.87□□□□□ -0.67
COL6A3-212ENST00000491769 IGHV1-8P0DP01 117 aa10.87□□□□□ -0.67
COL6A3-212ENST00000491769 PLNP26678 52 aa10.87□□□□□ -0.67
COL6A3-212ENST00000491769 CFHR3Q02985 330 aa10.87□□□□□ -0.67
COL6A3-212ENST00000491769 TNFRSF14Q92956 283 aa10.87□□□□□ -0.67
COL6A3-212ENST00000491769 EDA2RQ9HAV5 297 aa10.87□□□□□ -0.67
COL6A3-212ENST00000491769 EPDR1Q9UM22 224 aa10.87□□□□□ -0.67
COL6A3-212ENST00000491769 CACNA1GO43497 2377 aa10.86□□□□□ -0.67
COL6A3-212ENST00000491769 IGHV1-3A0A0C4DH29 117 aa10.86□□□□□ -0.67
COL6A3-212ENST00000491769 NPIPB5A8MRT5 1133 aa10.86□□□□□ -0.67
COL6A3-212ENST00000491769 DAD1P61803 113 aa10.86□□□□□ -0.67
COL6A3-212ENST00000491769 C6orf226Q5I0X4 101 aa10.86□□□□□ -0.67
COL6A3-212ENST00000491769 PUSL1Q8N0Z8 303 aaKnown RBP10.86□□□□□ -0.67
COL6A3-212ENST00000491769 RBM38Q9H0Z9 239 aaKnown RBP10.86□□□□□ -0.67
COL6A3-212ENST00000491769 FAM19A2Q8N3H0 131 aa10.86□□□□□ -0.67
COL6A3-212ENST00000491769 MSRB2Q9Y3D2 182 aa10.86□□□□□ -0.67
COL6A3-212ENST00000491769 TMEM178BH3BS89 294 aa10.86□□□□□ -0.67
COL6A3-212ENST00000491769 RUSC1-AS1Q66K80 236 aa10.86□□□□□ -0.67
COL6A3-212ENST00000491769 ZNF474Q6S9Z5 364 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-212ENST00000491769 ZMAT4Q9H898 229 aa10.86□□□□□ -0.67
COL6A3-212ENST00000491769 BMPERQ8N8U9 685 aa10.86□□□□□ -0.67
COL6A3-212ENST00000491769 GTF3AQ92664 365 aaKnown RBP10.86□□□□□ -0.67
COL6A3-212ENST00000491769 CCL1P22362 96 aa10.86□□□□□ -0.67
COL6A3-212ENST00000491769 ERCC8Q13216 396 aa10.86□□□□□ -0.67
COL6A3-212ENST00000491769 NTN3O00634 580 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-212ENST00000491769 SELLP14151 372 aa10.85□□□□□ -0.67
COL6A3-212ENST00000491769 UCP1P25874 307 aa10.85□□□□□ -0.67
COL6A3-212ENST00000491769 H2BFSP57053 126 aa10.85□□□□□ -0.67
COL6A3-212ENST00000491769 SYNJ2BPP57105 145 aa10.85□□□□□ -0.67
COL6A3-212ENST00000491769 TRAV8-2A0A0B4J237 113 aa10.85□□□□□ -0.67
COL6A3-212ENST00000491769 ORMDL2Q53FV1 153 aa10.85□□□□□ -0.67
COL6A3-212ENST00000491769 C1orf159Q96HA4 380 aa10.85□□□□□ -0.67
COL6A3-212ENST00000491769 PEF1Q9UBV8 284 aaKnown RBP10.85□□□□□ -0.67
COL6A3-212ENST00000491769 CABIN1Q9Y6J0 2220 aa10.85□□□□□ -0.67
COL6A3-212ENST00000491769 CD300EQ496F6 205 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-212ENST00000491769 PLSCR4Q9NRQ2 329 aa10.85□□□□□ -0.67
COL6A3-212ENST00000491769 TRBV7-1A0A0A6YYK4 115 aa10.84□□□□□ -0.67
COL6A3-212ENST00000491769 SS18Q15532 418 aa10.84□□□□□ -0.67
COL6A3-212ENST00000491769 SLC25A39Q9BZJ4 359 aaPredicted RBP10.84□□□□□ -0.67
COL6A3-212ENST00000491769 ANAPC10Q9UM13 185 aa10.84□□□□□ -0.67
COL6A3-212ENST00000491769 UBR3Q6ZT12 1888 aa10.84□□□□□ -0.67
COL6A3-212ENST00000491769 NR2C2APQ86WQ0 139 aa10.84□□□□□ -0.67
COL6A3-212ENST00000491769 DLX4Q92988 240 aaPredicted RBP10.84□□□□□ -0.67
COL6A3-212ENST00000491769 NEUROG3Q9Y4Z2 214 aa10.84□□□□□ -0.67
COL6A3-212ENST00000491769 ATAD5Q96QE3 1844 aa10.84□□□□□ -0.67
COL6A3-212ENST00000491769 C10orf55Q5SWW7 151 aa10.84□□□□□ -0.67
COL6A3-212ENST00000491769 TMEM249Q2WGJ8 235 aa10.84□□□□□ -0.67
COL6A3-212ENST00000491769 TRBV6-7A0A0A0MS04 114 aa10.84□□□□□ -0.67
COL6A3-212ENST00000491769 COL8A2P25067 703 aa10.84□□□□□ -0.67
COL6A3-212ENST00000491769 SPSB3Q6PJ21 355 aa10.84□□□□□ -0.67
COL6A3-212ENST00000491769 NRN1Q9NPD7 142 aa10.84□□□□□ -0.67
COL6A3-212ENST00000491769 COL4A5P29400 1685 aa10.84□□□□□ -0.67
COL6A3-212ENST00000491769 MARF1Q9Y4F3 1742 aaKnown RBP10.83□□□□□ -0.68
COL6A3-212ENST00000491769 IGLV3-12A0A075B6K2 115 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 CLPSP04118 112 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 C1QTNF9P0C862 333 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 M0R2P5 195 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 DPM2O94777 84 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 CD55P08174 381 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 NMBP08949 121 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 KLF17Q5JT82 389 aaPredicted RBP10.83□□□□□ -0.68
COL6A3-212ENST00000491769 MBD3L1Q8WWY6 194 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 HEATR5BQ9P2D3 2071 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 CTAG1AP78358 180 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 LCN12Q6JVE5 192 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 OTOFQ9HC10 1997 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 MTCL1Q9Y4B5 1905 aaKnown RBP10.83□□□□□ -0.68
COL6A3-212ENST00000491769 PIKFYVEQ9Y2I7 2098 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 HAPLN4Q86UW8 402 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 FGFBP3Q8TAT2 258 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 ZNF561-AS1K7EIQ3 104 aa10.83□□□□□ -0.68
COL6A3-212ENST00000491769 IGKV1D-13A0A0B4J2D9 117 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 IGKV1-13P0DP09 117 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 IL17RELQ6ZVW7 336 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 MESP1Q9BRJ9 268 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 TRAV13-1A0A0B4J241 112 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 TRAV5A0A0B4J249 113 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 M0R1W7 72 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 CA1P00915 261 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-212ENST00000491769 MSMBP08118 114 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 PMS2P5A8MQ11 134 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 GZMBP10144 247 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 PRR30Q53SZ7 412 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-212ENST00000491769 USMG5Q96IX5 58 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 MS4A6AQ9H2W1 248 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 LYZL4Q96KX0 146 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 LSM4Q9Y4Z0 139 aaKnown RBP10.82□□□□□ -0.68
COL6A3-212ENST00000491769 MBD3L4A6NDZ8 208 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-212ENST00000491769 MBD3L3A6NE82 208 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-212ENST00000491769 PGPEP1LA6NFU8 196 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 MBD3L5A6NJ08 208 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-212ENST00000491769 F2Z2F3 143 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 DEFB131AP59861 70 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 TEX43Q6ZNM6 134 aa10.82□□□□□ -0.68
COL6A3-212ENST00000491769 MBD3L2Q8NHZ7 208 aaPredicted RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms