RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 TRAV3A0A0B4J244 114 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 A0A1B0GUS0 222 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 AP4M1O00189 453 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 SNAPC5O75971 98 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 ACTL6BO94805 426 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 OR9G9P0C7N8 305 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 COMPP49747 757 aaPredicted RBP9.14□□□□□ -0.95
SCN9A-204ENST00000452182 CRIP2P52943 208 aaPredicted RBP9.14□□□□□ -0.95
SCN9A-204ENST00000452182 FXYD3Q14802 87 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 AARDQ4LEZ3 155 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 C9orf152Q5JTZ5 239 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 ZNF429Q86V71 674 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 FOXRED2Q8IWF2 684 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.14□□□□□ -0.95
SCN9A-204ENST00000452182 LINC01006Q8NI28 216 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 RNASE11Q8TAA1 199 aaKnown RBP9.14□□□□□ -0.95
SCN9A-204ENST00000452182 CLCC1Q96S66 551 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 SERTAD4Q9NUC0 356 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 TMEM14BQ9NUH8 114 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 COA4Q9NYJ1 87 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 FOXA2Q9Y261 457 aaPredicted RBP9.14□□□□□ -0.95
SCN9A-204ENST00000452182 ZNF257Q9Y2Q1 563 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 TNCP24821 2201 aa9.14□□□□□ -0.95
SCN9A-204ENST00000452182 A0A0B4J293 547 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 A0A0G2JRQ6 117 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 C7orf66A4D0T2 115 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 LINC01548A6NM66 108 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 C15orf61A6NNL5 157 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 CNIH1O95406 144 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 SLC25A6P12236 298 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 NDPQ00604 133 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 TNXAQ16473 311 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 TATDN3Q17R31 274 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 KRTAP24-1Q3LI83 254 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 C12orf45Q8N5I9 185 aaPredicted RBP9.13□□□□□ -0.95
SCN9A-204ENST00000452182 OR5B3Q8NH48 314 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 OR4A16Q8NH70 328 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 SGMS2Q8NHU3 365 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 ARPC1AQ92747 370 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 GPR146Q96CH1 333 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 COMMD5Q9GZQ3 224 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 CACFD1Q9UGQ2 172 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 PLXNB1O43157 2135 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 A0A1B0GU03 582 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 TMEM89A2RUT3 159 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 CLPSL1A2RUU4 121 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 EGR2P11161 476 aaPredicted RBP9.13□□□□□ -0.95
SCN9A-204ENST00000452182 VDAC2P45880 294 aaPredicted RBP9.13□□□□□ -0.95
SCN9A-204ENST00000452182 FOXL1Q12952 345 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 THOC7Q6I9Y2 204 aaKnown RBP9.13□□□□□ -0.95
SCN9A-204ENST00000452182 Q6ZRM9 215 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 SRSF12Q8WXF0 261 aaKnown RBP9.13□□□□□ -0.95
SCN9A-204ENST00000452182 TAF15Q92804 592 aaKnown RBP eCLIP9.13□□□□□ -0.95
SCN9A-204ENST00000452182 TMEM68Q96MH6 324 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 SPIN2AQ99865 258 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 SPIN2BQ9BPZ2 258 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 WNT10AQ9GZT5 417 aa9.13□□□□□ -0.95
SCN9A-204ENST00000452182 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.13□□□□□ -0.95
SCN9A-204ENST00000452182 ATP6V0E1O15342 81 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 IFNA21P01568 189 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 HOXB5P09067 269 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 SULT1A3P0DMM9 295 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 SULT1A4P0DMN0 295 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 RPL27AP46776 148 aaKnown RBP9.12□□□□□ -0.95
SCN9A-204ENST00000452182 OR2B8PP59922 312 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 GNB1P62873 340 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 TMEM267Q0VDI3 215 aaPredicted RBP9.12□□□□□ -0.95
SCN9A-204ENST00000452182 SMCO1Q147U7 214 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 IZUMO4Q1ZYL8 232 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 PDLIM3Q53GG5 364 aaPredicted RBP9.12□□□□□ -0.95
SCN9A-204ENST00000452182 AKIRIN2Q53H80 203 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 STPG2Q8N412 459 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 OR1L8Q8NGR8 309 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 OR52E5Q8NH55 327 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 TMEM158Q8WZ71 300 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 SRSF8Q9BRL6 282 aaKnown RBP9.12□□□□□ -0.95
SCN9A-204ENST00000452182 GON7Q9BXV9 100 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 PARP11Q9NR21 331 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 NSG2Q9Y328 171 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 FBXO7Q9Y3I1 522 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 OR51B2Q9Y5P1 312 aa9.12□□□□□ -0.95
SCN9A-204ENST00000452182 FBN1P35555 2871 aaKnown RBP9.11□□□□□ -0.95
SCN9A-204ENST00000452182 TET2Q6N021 2002 aaPredicted RBP9.11□□□□□ -0.95
SCN9A-204ENST00000452182 TEX50A0A1B0GTY4 177 aa9.11□□□□□ -0.95
SCN9A-204ENST00000452182 E7EUB6 86 aa9.11□□□□□ -0.95
SCN9A-204ENST00000452182 PITX3O75364 302 aa9.11□□□□□ -0.95
SCN9A-204ENST00000452182 ADAP1O75689 374 aa9.11□□□□□ -0.95
SCN9A-204ENST00000452182 HSPE1P61604 102 aaKnown RBP9.11□□□□□ -0.95
SCN9A-204ENST00000452182 TMEM95Q3KNT9 176 aa9.11□□□□□ -0.95
SCN9A-204ENST00000452182 C19orf54Q5BKX5 351 aa9.11□□□□□ -0.95
SCN9A-204ENST00000452182 GGNBP1Q5YKI7 109 aa9.11□□□□□ -0.95
SCN9A-204ENST00000452182 HSD17B13Q7Z5P4 300 aaPredicted RBP9.11□□□□□ -0.95
SCN9A-204ENST00000452182 QTRT1Q9BXR0 403 aaKnown RBP9.11□□□□□ -0.95
SCN9A-204ENST00000452182 NDUFA4L2Q9NRX3 87 aa9.11□□□□□ -0.95
SCN9A-204ENST00000452182 CACNG5Q9UF02 275 aa9.11□□□□□ -0.95
SCN9A-204ENST00000452182 A0A1B0GW64 132 aa9.1□□□□□ -0.95
SCN9A-204ENST00000452182 MSGN1A6NI15 193 aa9.1□□□□□ -0.95
SCN9A-204ENST00000452182 CGB1A6NKQ9 187 aa9.1□□□□□ -0.95
SCN9A-204ENST00000452182 TEX22C9J3V5 150 aa9.1□□□□□ -0.95
SCN9A-204ENST00000452182 RBMXL2O75526 392 aaKnown RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms