RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 UBBP0CG47 229 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 DNAH10OSP0CZ25 163 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 CPMP14384 443 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 RPL7P18124 248 aaKnown RBP2.49□□□□□ -2.01
NUP88-209ENST00000574855 RAB3AP20336 220 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 RAB3BP20337 219 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 CCL1P22362 96 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 PSMB2P49721 201 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 NCBP2P52298 156 aaKnown RBP eCLIP2.49□□□□□ -2.01
NUP88-209ENST00000574855 ZNF138P52744 262 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 CCL23P55773 120 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 ARPP19P56211 112 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 PIGPP57054 158 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 KLF3P57682 345 aaPredicted RBP2.49□□□□□ -2.01
NUP88-209ENST00000574855 DAD1P61803 113 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 HLA-DRB3P79483 266 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 REG3AQ06141 175 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 RUNX3Q13761 415 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 KIAA0087Q14695 138 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 EBPQ15125 230 aaKnown RBP2.49□□□□□ -2.01
NUP88-209ENST00000574855 C6orf99Q4VX62 202 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 ATP6AP1LQ52LC2 224 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 CENPWQ5EE01 88 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 OR2B11Q5JQS5 317 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 LCN8Q6JVE9 175 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 AGTRAPQ6RW13 159 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 ZCCHC23Q6ZST2 131 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 FA2HQ7L5A8 372 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 C20orf196Q8IYI0 205 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 DEFB107AQ8IZN7 70 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.49□□□□□ -2.01
NUP88-209ENST00000574855 OR8B12Q8NGG6 310 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 OR13C4Q8NGS5 318 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 ZNF675Q8TD23 568 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 GPR119Q8TDV5 335 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 GEMIN6Q8WXD5 167 aaKnown RBP2.49□□□□□ -2.01
NUP88-209ENST00000574855 KLK6Q92876 244 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 TMEM159Q96B96 161 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 ROPN1LQ96C74 230 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 SLC25A44Q96H78 314 aaPredicted RBP2.49□□□□□ -2.01
NUP88-209ENST00000574855 SLC35G5Q96KT7 338 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 FCRL1Q96LA6 429 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 SIGLEC12Q96PQ1 595 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 ZNF382Q96SR6 550 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 LINC01587Q99440 93 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 PKMYT1Q99640 499 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 PBDC1Q9BVG4 233 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 C19orf24Q9BVV8 132 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 MND1Q9BWT6 205 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 TBL1XR1Q9BZK7 514 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 PARLQ9H300 379 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 HEXA-AS1Q9H8Q6 139 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 HES4Q9HCC6 221 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 MMP26Q9NRE1 261 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 UBQLN4Q9NRR5 601 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 SSR3Q9UNL2 185 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 WASHC3Q9Y3C0 194 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 SLC25A15Q9Y619 301 aa2.49□□□□□ -2.01
NUP88-209ENST00000574855 PTPRFP10586 1907 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 SBF1O95248 1867 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 ZNF236Q9UL36 1845 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 TRAV9-2A0A087WT02 112 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 A0A096LPI6 279 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 TRAV8-3A0A0A6YYJ7 113 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 BORCS7-ASMTA0A0B4J1R7 106 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 IGHV1-69DA0A0B4J2H0 117 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 LOC285095A0A1B0GVY8 99 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 A0A1B0GX51 115 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 FAM92AA1XBS5 289 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 TMEM189A5PLL7 270 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 BBIP1A8MTZ0 92 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 KLLNB2CW77 178 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 H7C1C5 153 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 SAP18O00422 153 aaKnown RBP2.48□□□□□ -2.01
NUP88-209ENST00000574855 UPK2O00526 184 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 RGS5O15539 181 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 LYPLA1O75608 230 aaPredicted RBP2.48□□□□□ -2.01
NUP88-209ENST00000574855 KBTBD11O94819 623 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 SUPT7LO94864 414 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 IGKV3-15P01624 115 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 APOA2P02652 100 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 IFNA4P05014 189 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 S100A8P05109 93 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 HLA-DQB2P05538 268 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 LGALS1P09382 135 aaKnown RBP2.48□□□□□ -2.01
NUP88-209ENST00000574855 RPS3P23396 243 aaKnown RBP eCLIP2.48□□□□□ -2.01
NUP88-209ENST00000574855 BLVRBP30043 206 aaPredicted RBP2.48□□□□□ -2.01
NUP88-209ENST00000574855 RBP2P50120 134 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 NUDT2P50583 147 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 P2RX1P51575 399 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 EMP1P54849 157 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 GFERP55789 205 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 RPS20P60866 119 aaKnown RBP2.48□□□□□ -2.01
NUP88-209ENST00000574855 SNRPD2P62316 118 aaKnown RBP2.48□□□□□ -2.01
NUP88-209ENST00000574855 LCN6P62502 163 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 RPS28P62857 69 aaKnown RBP2.48□□□□□ -2.01
NUP88-209ENST00000574855 FABP5Q01469 135 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 GNA12Q03113 381 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 TMEM267Q0VDI3 215 aaPredicted RBP2.48□□□□□ -2.01
NUP88-209ENST00000574855 DAZ2Q13117 558 aaKnown RBP2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms