RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 AEBP2Q6ZN18 517 aaPredicted RBP19.12■□□□□ 0.65
NUP88-209ENST00000574855 CHIC1Q5VXU3 224 aa18.54■□□□□ 0.56
NUP88-209ENST00000574855 SENP3Q9H4L4 574 aaPredicted RBP16.32■□□□□ 0.2
NUP88-209ENST00000574855 PHF23Q9BUL5 403 aaPredicted RBP16.26■□□□□ 0.19
NUP88-209ENST00000574855 POTEDQ86YR6 584 aa15.19■□□□□ 0.02
NUP88-209ENST00000574855 FOXD1Q16676 465 aa15.13■□□□□ 0.01
NUP88-209ENST00000574855 PLPPR3Q6T4P5 718 aa15.02■□□□□ -0
NUP88-209ENST00000574855 ADRA2BP18089 450 aa14.41□□□□□ -0.1
NUP88-209ENST00000574855 PPP6R1Q9UPN7 881 aa14.41□□□□□ -0.1
NUP88-209ENST00000574855 PIAS4Q8N2W9 510 aaPredicted RBP14.25□□□□□ -0.13
NUP88-209ENST00000574855 MSH5O43196 834 aa14.06□□□□□ -0.16
NUP88-209ENST00000574855 SCAF1Q9H7N4 1312 aaKnown RBP13.26□□□□□ -0.29
NUP88-209ENST00000574855 PPP4R3CPQ6ZMV5 832 aa13.19□□□□□ -0.3
NUP88-209ENST00000574855 MAPK8IP2Q13387 824 aaPredicted RBP13.11□□□□□ -0.31
NUP88-209ENST00000574855 DMRT2Q9Y5R5 561 aa12.98□□□□□ -0.33
NUP88-209ENST00000574855 CNKSR2Q8WXI2 1034 aa12.88□□□□□ -0.35
NUP88-209ENST00000574855 NCBP3Q53F19 620 aaKnown RBP12.84□□□□□ -0.35
NUP88-209ENST00000574855 KCNA4P22459 653 aa12.66□□□□□ -0.38
NUP88-209ENST00000574855 RNF216Q9NWF9 866 aaPredicted RBP12.66□□□□□ -0.38
NUP88-209ENST00000574855 HOXD11P31277 338 aaPredicted RBP12.64□□□□□ -0.39
NUP88-209ENST00000574855 NPM3O75607 178 aaKnown RBP12.59□□□□□ -0.39
NUP88-209ENST00000574855 CACNB1Q02641 598 aaPredicted RBP12.51□□□□□ -0.41
NUP88-209ENST00000574855 DCAF8L1A6NGE4 600 aa12.45□□□□□ -0.42
NUP88-209ENST00000574855 DNAJC5BQ9UF47 199 aa12.26□□□□□ -0.45
NUP88-209ENST00000574855 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.08□□□□□ -0.48
NUP88-209ENST00000574855 SLC4A1APQ9BWU0 796 aaKnown RBP12.06□□□□□ -0.48
NUP88-209ENST00000574855 RNF39Q9H2S5 420 aa12.01□□□□□ -0.49
NUP88-209ENST00000574855 SLC4A2P04920 1241 aa11.92□□□□□ -0.5
NUP88-209ENST00000574855 C1QBPQ07021 282 aaKnown RBP11.88□□□□□ -0.51
NUP88-209ENST00000574855 U3KPZ7 1027 aaPredicted RBP11.82□□□□□ -0.52
NUP88-209ENST00000574855 FOXD4L1Q9NU39 408 aa11.72□□□□□ -0.53
NUP88-209ENST00000574855 POTEHQ6S545 545 aa11.71□□□□□ -0.53
NUP88-209ENST00000574855 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.69□□□□□ -0.54
NUP88-209ENST00000574855 HNRNPUL2Q1KMD3 747 aaKnown RBP11.69□□□□□ -0.54
NUP88-209ENST00000574855 MYCNP04198 464 aaPredicted RBP11.66□□□□□ -0.54
NUP88-209ENST00000574855 ZBTB22O15209 634 aa11.62□□□□□ -0.55
NUP88-209ENST00000574855 APLP2Q06481 763 aa11.61□□□□□ -0.55
NUP88-209ENST00000574855 SAMD1Q6SPF0 538 aaPredicted RBP11.61□□□□□ -0.55
NUP88-209ENST00000574855 CAPN15O75808 1086 aa11.54□□□□□ -0.56
NUP88-209ENST00000574855 SPINK5Q9NQ38 1064 aaPredicted RBP11.54□□□□□ -0.56
NUP88-209ENST00000574855 EHMT2Q96KQ7 1210 aa11.49□□□□□ -0.57
NUP88-209ENST00000574855 TRHP20396 242 aaPredicted RBP11.44□□□□□ -0.58
NUP88-209ENST00000574855 CSRNP3Q8WYN3 585 aa11.44□□□□□ -0.58
NUP88-209ENST00000574855 ZNF219Q9P2Y4 722 aaPredicted RBP11.44□□□□□ -0.58
NUP88-209ENST00000574855 ATXN8OSP0DMR3 200 aa11.36□□□□□ -0.59
NUP88-209ENST00000574855 DSG3P32926 999 aa11.36□□□□□ -0.59
NUP88-209ENST00000574855 ATF5Q9Y2D1 282 aaPredicted RBP11.32□□□□□ -0.6
NUP88-209ENST00000574855 ABCB7O75027 752 aa11.27□□□□□ -0.61
NUP88-209ENST00000574855 POLA2Q14181 598 aa11.23□□□□□ -0.61
NUP88-209ENST00000574855 ZBTB12Q9Y330 459 aaPredicted RBP11.05□□□□□ -0.64
NUP88-209ENST00000574855 FBLN2P98095 1184 aa10.93□□□□□ -0.66
NUP88-209ENST00000574855 RBM42Q9BTD8 480 aaKnown RBP10.88□□□□□ -0.67
NUP88-209ENST00000574855 MKRN4PQ13434 485 aaPredicted RBP10.82□□□□□ -0.68
NUP88-209ENST00000574855 OSCARQ8IYS5 282 aa10.81□□□□□ -0.68
NUP88-209ENST00000574855 SPDYE2BA6NHP3 402 aa10.71□□□□□ -0.69
NUP88-209ENST00000574855 SPDYE6P0CI01 402 aa10.71□□□□□ -0.69
NUP88-209ENST00000574855 SPDYE2Q495Y8 402 aa10.71□□□□□ -0.69
NUP88-209ENST00000574855 AKT1S1Q96B36 256 aa10.69□□□□□ -0.7
NUP88-209ENST00000574855 ZNF692Q9BU19 519 aaPredicted RBP10.66□□□□□ -0.7
NUP88-209ENST00000574855 SSUH2Q9Y2M2 353 aa10.58□□□□□ -0.72
NUP88-209ENST00000574855 REM2Q8IYK8 340 aaPredicted RBP10.57□□□□□ -0.72
NUP88-209ENST00000574855 SPDYE4A6NLX3 237 aa10.54□□□□□ -0.72
NUP88-209ENST00000574855 SP7Q8TDD2 431 aaPredicted RBP10.53□□□□□ -0.72
NUP88-209ENST00000574855 PABPN1Q86U42 306 aaKnown RBP eCLIP10.49□□□□□ -0.73
NUP88-209ENST00000574855 CHRDL2Q6WN34 429 aa10.47□□□□□ -0.73
NUP88-209ENST00000574855 SPDYE1Q8NFV5 336 aaPredicted RBP10.45□□□□□ -0.74
NUP88-209ENST00000574855 PITPNM1O00562 1244 aa10.44□□□□□ -0.74
NUP88-209ENST00000574855 CLEC11AQ9Y240 323 aa10.41□□□□□ -0.74
NUP88-209ENST00000574855 FKBP8Q14318 412 aa10.37□□□□□ -0.75
NUP88-209ENST00000574855 STAG3Q9UJ98 1225 aa10.32□□□□□ -0.76
NUP88-209ENST00000574855 PRR29P0C7W0 189 aa10.3□□□□□ -0.76
NUP88-209ENST00000574855 PROM2Q8N271 834 aa10.3□□□□□ -0.76
NUP88-209ENST00000574855 FXR2P51116 673 aaKnown RBP eCLIP10.28□□□□□ -0.76
NUP88-209ENST00000574855 PIP4P2Q8N4L2 257 aa10.28□□□□□ -0.76
NUP88-209ENST00000574855 PRKAR2AP13861 404 aaKnown RBP10.19□□□□□ -0.78
NUP88-209ENST00000574855 CHADLQ6NUI6 762 aa10.13□□□□□ -0.79
NUP88-209ENST00000574855 FBXO3Q9UK99 471 aa10.1□□□□□ -0.79
NUP88-209ENST00000574855 CREBZFQ9NS37 354 aa10.08□□□□□ -0.8
NUP88-209ENST00000574855 MIER1Q8N108 512 aa10.05□□□□□ -0.8
NUP88-209ENST00000574855 FARP1Q9Y4F1 1045 aaPredicted RBP10.05□□□□□ -0.8
NUP88-209ENST00000574855 HAX1O00165 279 aa10.04□□□□□ -0.8
NUP88-209ENST00000574855 PLEKHG5O94827 1062 aa10.04□□□□□ -0.8
NUP88-209ENST00000574855 PLSCR2Q9NRY7 297 aa10.04□□□□□ -0.8
NUP88-209ENST00000574855 PLCD3Q8N3E9 789 aa10□□□□□ -0.81
NUP88-209ENST00000574855 NPM1P06748 294 aaKnown RBP eCLIP9.97□□□□□ -0.81
NUP88-209ENST00000574855 C19orf67A6NJJ6 358 aa9.94□□□□□ -0.82
NUP88-209ENST00000574855 MNX1P50219 401 aaPredicted RBP9.94□□□□□ -0.82
NUP88-209ENST00000574855 ZBTB47Q9UFB7 747 aaPredicted RBP9.93□□□□□ -0.82
NUP88-209ENST00000574855 VASPP50552 380 aaPredicted RBP9.92□□□□□ -0.82
NUP88-209ENST00000574855 CD44P16070 742 aaKnown RBP9.89□□□□□ -0.83
NUP88-209ENST00000574855 EVX2Q03828 476 aa9.88□□□□□ -0.83
NUP88-209ENST00000574855 LHX8Q68G74 356 aa9.87□□□□□ -0.83
NUP88-209ENST00000574855 PAK3O75914 559 aaPredicted RBP9.85□□□□□ -0.83
NUP88-209ENST00000574855 KLHL34Q8N239 644 aa9.83□□□□□ -0.84
NUP88-209ENST00000574855 ZRANB1Q9UGI0 708 aa9.81□□□□□ -0.84
NUP88-209ENST00000574855 TSPYL2Q9H2G4 693 aaPredicted RBP9.77□□□□□ -0.85
NUP88-209ENST00000574855 IFNLR1Q8IU57 520 aaPredicted RBP9.76□□□□□ -0.85
NUP88-209ENST00000574855 CLCN6P51797 869 aa9.75□□□□□ -0.85
NUP88-209ENST00000574855 NUBP1P53384 320 aa9.75□□□□□ -0.85
NUP88-209ENST00000574855 RASEFQ8IZ41 740 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 285.4 ms