RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 UBE2UQ5VVX9 321 aa7.49□□□□□ -1.21
VRK3-216ENST00000599342 LCN12Q6JVE5 192 aa7.49□□□□□ -1.21
VRK3-216ENST00000599342 TPRA1Q86W33 373 aa7.49□□□□□ -1.21
VRK3-216ENST00000599342 MMD2Q8IY49 270 aa7.49□□□□□ -1.21
VRK3-216ENST00000599342 NUDCD2Q8WVJ2 157 aa7.49□□□□□ -1.21
VRK3-216ENST00000599342 SNAPC3Q92966 411 aa7.49□□□□□ -1.21
VRK3-216ENST00000599342 Q9H521 79 aa7.49□□□□□ -1.21
VRK3-216ENST00000599342 ZNF430Q9H8G1 570 aaPredicted RBP7.49□□□□□ -1.21
VRK3-216ENST00000599342 PALMDQ9NP74 551 aa7.49□□□□□ -1.21
VRK3-216ENST00000599342 TXNL4BQ9NX01 149 aaKnown RBP7.49□□□□□ -1.21
VRK3-216ENST00000599342 DAPK2Q9UIK4 370 aa7.49□□□□□ -1.21
VRK3-216ENST00000599342 SSR3Q9UNL2 185 aa7.49□□□□□ -1.21
VRK3-216ENST00000599342 HUWE1Q7Z6Z7 4374 aaKnown RBP7.49□□□□□ -1.21
VRK3-216ENST00000599342 TRBV12-3P01733 135 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 HLA-DQB1P01920 261 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 RHOGP84095 191 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 ATP5G2Q06055 141 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 MRGPRG-AS1Q2M3A8 158 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 CASC10Q5T4H9 136 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 SFXN4Q6P4A7 337 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 CNIH2Q6PI25 160 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 SLC25A42Q86VD7 318 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 SPARTQ8N0X7 666 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 Q8N402 240 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 OR4S2Q8NH73 311 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 VSTM2AQ8TAG5 236 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 LGALS14Q8TCE9 139 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 TCTEX1D2Q8WW35 142 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 HSD17B10Q99714 261 aaKnown RBP7.48□□□□□ -1.21
VRK3-216ENST00000599342 TM2D3Q9BRN9 247 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 SIGLEC8Q9NYZ4 499 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 SPATA2Q9UM82 520 aa7.48□□□□□ -1.21
VRK3-216ENST00000599342 RBMX2Q9Y388 322 aaKnown RBP7.48□□□□□ -1.21
VRK3-216ENST00000599342 RRP15Q9Y3B9 282 aaKnown RBP7.48□□□□□ -1.21
VRK3-216ENST00000599342 DPPA5A6NC42 116 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 A8MZ25 164 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 AIREO43918 545 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 PRH1P02810 166 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 CSN3P07498 182 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 LYL1P12980 280 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 ARPC4P59998 168 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 RPL30P62888 115 aaKnown RBP7.47□□□□□ -1.21
VRK3-216ENST00000599342 FAM209BQ5JX69 171 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 C10orf55Q5SWW7 151 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 IL34Q6ZMJ4 242 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 Q8N1Y9 231 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 ISOC1Q96CN7 298 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 OR51E2Q9H255 320 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 TUBA4BQ9H853 241 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 AKIP1Q9NQ31 210 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 C19orf73Q9NVV2 129 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 RHBDL2Q9NX52 303 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 ANXA10Q9UJ72 324 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 ADAM30Q9UKF2 790 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 SORL1Q92673 2214 aa7.47□□□□□ -1.21
VRK3-216ENST00000599342 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.46□□□□□ -1.22
VRK3-216ENST00000599342 TRBV9A0A0B4J1U6 114 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 IGKV1D-13A0A0B4J2D9 117 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 RBMXL2O75526 392 aaKnown RBP7.46□□□□□ -1.22
VRK3-216ENST00000599342 OR2J3O76001 311 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 KBTBD11O94819 623 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 ATP6V1G2O95670 118 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 IGKV1-13P0DP09 117 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 SDC2P34741 201 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 SCAND1P57086 179 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 ZNF45Q02386 682 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 MXD1Q05195 221 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 C15orf32Q32M92 178 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 ZNF66Q6ZN08 573 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 VKORC1L1Q8N0U8 176 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 TTC9CQ8N5M4 171 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 NECAP1Q8NC96 275 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 OR2K2Q8NGT1 345 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 DYNLRB2Q8TF09 96 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 FYTTD1Q96QD9 318 aaKnown RBP7.46□□□□□ -1.22
VRK3-216ENST00000599342 OR2A7Q96R45 310 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 CITED4Q96RK1 184 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 SPATA25Q9BR10 227 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 YTHDF1Q9BYJ9 559 aaKnown RBP7.46□□□□□ -1.22
VRK3-216ENST00000599342 TAS2R8Q9NYW2 309 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 ZNF257Q9Y2Q1 563 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 ETV7Q9Y603 341 aa7.46□□□□□ -1.22
VRK3-216ENST00000599342 LOC100506127A0A0U1RQW1 187 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 HMX3A6NHT5 357 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 BMPR1BO00238 502 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 SSX5O60225 188 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 DHFRP00374 187 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 HRASP01112 189 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 IGLV2-14P01704 120 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 IFNA6P05013 189 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 MAS1LP35410 378 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 KIR2DS2P43631 304 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 RPL27AP46776 148 aaKnown RBP7.45□□□□□ -1.22
VRK3-216ENST00000599342 IDNKQ5T6J7 187 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 ZNF773Q6PK81 442 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 MFSD4AQ8N468 514 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 BEST4Q8NFU0 473 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 OR13F1Q8NGS4 319 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 TMEM167AQ8TBQ9 72 aa7.45□□□□□ -1.22
VRK3-216ENST00000599342 SECTM1Q8WVN6 248 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms