RNA–Protein interactions for RNA: YNR006W

VPS27, Transcript of Endosomal protein that forms a complex with Hse1p, yeast

Gene VPS27, Length 1,869 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS27	YNR006W	YPS7	Q06325	596 aa		4.27	□□□□□ -1.73
VPS27	YNR006W	CSR1	Q06705	408 aa	Known RBP	4.27	□□□□□ -1.73
VPS27	YNR006W	YPL277C	Q08989	487 aa		4.27	□□□□□ -1.73
VPS27	YNR006W	DBP10	Q12389	995 aa	Known RBP	4.27	□□□□□ -1.73
VPS27	YNR006W	SMC6	Q12749	1114 aa		4.27	□□□□□ -1.73
VPS27	YNR006W	PRC1	P00729	532 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.26	□□□□□ -1.73	not detected
VPS27	YNR006W	SWI4	P25302	1093 aa	Known RBP	4.26	□□□□□ -1.73
VPS27	YNR006W	SGF29	P25554	259 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	APL1	P27351	700 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	RPD3	P32561	433 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	MTH1	P35198	433 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	BYE1	P36106	594 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	ESL2	P36168	1195 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	RXT2	P38255	430 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	MEP1	P40260	492 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	SET2	P46995	733 aa	Known RBP	4.26	□□□□□ -1.73
VPS27	YNR006W	GPI8	P49018	411 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	MNT2	P53059	558 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	MSC2	Q03455	724 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	SIZ1	Q04195	904 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	PGC1	Q08959	321 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	SPT7	P35177	1332 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	POL3	P15436	1097 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	PDX1	P16451	410 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	BRF1	P29056	596 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	FRD1	P32614	470 aa	Known RBP	4.26	□□□□□ -1.73
VPS27	YNR006W	YKR073C	P36153	106 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	CCT3	P39077	534 aa	Known RBP	4.26	□□□□□ -1.73
VPS27	YNR006W	BFA1	P47113	574 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	SAP4	P53036	818 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	BTN2	P53286	410 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	YNR071C	P53757	342 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	ORC3	P54790	616 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	YDR131C	Q03899	556 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	YCG1	Q06680	1035 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	STP4	Q07351	490 aa		4.26	□□□□□ -1.73
VPS27	YNR006W	IWR1	Q07532	353 aa	Predicted RBP	4.26	□□□□□ -1.73
VPS27	YNR006W	RPS9A	O13516	197 aa	Known RBP	4.25	□□□□□ -1.73
VPS27	YNR006W	RED1	P14291	827 aa		4.25	□□□□□ -1.73
VPS27	YNR006W	CKA1	P15790	372 aa		4.25	□□□□□ -1.73
VPS27	YNR006W	AAD3	P25612	363 aa		4.25	□□□□□ -1.73
VPS27	YNR006W	IMG2	P25642	146 aa	Predicted RBP	4.25	□□□□□ -1.73
VPS27	YNR006W	DGR2	P32330	852 aa		4.25	□□□□□ -1.73
VPS27	YNR006W	MIP6	P38760	659 aa	Known RBP	4.25	□□□□□ -1.73
VPS27	YNR006W	SSP120	P39931	234 aa	Known RBP	4.25	□□□□□ -1.73
VPS27	YNR006W	CTF4	Q01454	927 aa		4.25	□□□□□ -1.73
VPS27	YNR006W	TIM50	Q02776	476 aa		4.25	□□□□□ -1.73
VPS27	YNR006W	PCD1	Q12524	340 aa		4.25	□□□□□ -1.73
VPS27	YNR006W	MET17	P06106	444 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	KIN2	P13186	1147 aa	Known RBP	4.24	□□□□□ -1.73
VPS27	YNR006W	BET2	P20133	325 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	IME1	P21190	360 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	ORC2	P32833	620 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	TYE7	P33122	291 aa	Predicted RBP	4.24	□□□□□ -1.73
VPS27	YNR006W	YKR075C	P36155	307 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	POA1	P38218	177 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	YLF2	P38746	405 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	PSP1	P50896	841 aa	Known RBP	4.24	□□□□□ -1.73
VPS27	YNR006W	HOS2	P53096	452 aa	Predicted RBP	4.24	□□□□□ -1.73
VPS27	YNR006W	GPD1	Q00055	391 aa	Known RBP	4.24	□□□□□ -1.73
VPS27	YNR006W	YMR155W	Q03795	547 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	RSM24	Q03976	319 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	MED7	Q08278	222 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	YPL191C	Q08930	360 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	TY1B-A	O13527	1196 aa	Known RBP	4.24	□□□□□ -1.73
VPS27	YNR006W	ARG3	P05150	338 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	MIS1	P09440	975 aa	Known RBP	4.24	□□□□□ -1.73
VPS27	YNR006W	RPL19A	P0CX82	189 aa	Known RBP	4.24	□□□□□ -1.73
VPS27	YNR006W	RPL19B	P0CX83	189 aa	Predicted RBP	4.24	□□□□□ -1.73
VPS27	YNR006W	SAS3	P34218	831 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	NPR3	P38742	1146 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	LTP1	P40347	161 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	JEM1	P40358	645 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	ATP22	P50273	684 aa	Predicted RBP	4.24	□□□□□ -1.73
VPS27	YNR006W	DUS1	P53759	423 aa	Known RBP	4.24	□□□□□ -1.73
VPS27	YNR006W	SSL1	Q04673	461 aa	Predicted RBP	4.24	□□□□□ -1.73
VPS27	YNR006W	YLR345W	Q06137	509 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	CDA1	Q06702	301 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	GPR1	Q12361	961 aa		4.24	□□□□□ -1.73
VPS27	YNR006W	ADE3	P07245	946 aa	Known RBP	4.23	□□□□□ -1.73
VPS27	YNR006W	CMP2	P14747	604 aa		4.23	□□□□□ -1.73
VPS27	YNR006W	SRP101	P32916	621 aa		4.23	□□□□□ -1.73
VPS27	YNR006W	TAF5	P38129	798 aa		4.23	□□□□□ -1.73
VPS27	YNR006W	FMP10	P40098	244 aa		4.23	□□□□□ -1.73
VPS27	YNR006W	SIP4	P46954	829 aa		4.23	□□□□□ -1.73
VPS27	YNR006W	RAI1	P53063	387 aa	Known RBP	4.23	□□□□□ -1.73
VPS27	YNR006W	RCR2	Q03446	210 aa	Known RBP	4.23	□□□□□ -1.73
VPS27	YNR006W	YMR210W	Q03649	449 aa		4.23	□□□□□ -1.73
VPS27	YNR006W	ASM4	Q05166	528 aa		4.23	□□□□□ -1.73
VPS27	YNR006W	FBP1	P09201	348 aa		4.22	□□□□□ -1.73
VPS27	YNR006W	RIT1	P23796	513 aa		4.22	□□□□□ -1.73
VPS27	YNR006W	ROX1	P25042	368 aa		4.22	□□□□□ -1.73
VPS27	YNR006W	YKL100C	P34248	587 aa		4.22	□□□□□ -1.73
VPS27	YNR006W	CTF13	P35203	478 aa		4.22	□□□□□ -1.73
VPS27	YNR006W	TOS1	P38288	455 aa		4.22	□□□□□ -1.73
VPS27	YNR006W	UME6	P39001	836 aa		4.22	□□□□□ -1.73
VPS27	YNR006W	CIR1	P42940	261 aa		4.22	□□□□□ -1.73
VPS27	YNR006W	LSB3	P43603	459 aa	Known RBP	4.22	□□□□□ -1.73
VPS27	YNR006W	FOL2	P51601	243 aa	Known RBP	4.22	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 16.3 ms