RNA–Protein interactions for RNA: YHL006C

SHU1, Transcript of Component of Shu complex (aka PCSS complex), yeastyeast

Gene SHU1, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHU1YHL006C AIM32Q04689 311 aa13.92□□□□□ -0.18
SHU1YHL006C ECM38Q05902 660 aaPredicted RBP13.92□□□□□ -0.18
SHU1YHL006C YCG1Q06680 1035 aa13.92□□□□□ -0.18
SHU1YHL006C SIL1Q08199 421 aa13.92□□□□□ -0.18
SHU1YHL006C YOR059CQ08448 450 aaKnown RBP13.92□□□□□ -0.18
SHU1YHL006C SPT5P27692 1063 aaKnown RBP13.91□□□□□ -0.18
SHU1YHL006C SRB2P34162 210 aa13.91□□□□□ -0.18
SHU1YHL006C YIR007WP40566 764 aa13.91□□□□□ -0.18
SHU1YHL006C RTN1Q04947 295 aaKnown RBP13.91□□□□□ -0.18
SHU1YHL006C SVS1Q12254 260 aa13.91□□□□□ -0.18
SHU1YHL006C TOR1P35169 2470 aa13.9□□□□□ -0.18
SHU1YHL006C KAR3P17119 729 aa13.9□□□□□ -0.18
SHU1YHL006C RRN6P32786 894 aa13.9□□□□□ -0.18
SHU1YHL006C SGE1P33335 543 aa13.9□□□□□ -0.18
SHU1YHL006C HSL7P38274 827 aa13.9□□□□□ -0.18
SHU1YHL006C YNR065CP53751 1116 aa13.9□□□□□ -0.18
SHU1YHL006C PAB1P04147 577 aaKnown RBP RIP-Chip data13.89□□□□□ -0.19not detected
SHU1YHL006C PXL1P36166 706 aa13.89□□□□□ -0.19
SHU1YHL006C RTT107P38850 1070 aa13.89□□□□□ -0.19
SHU1YHL006C YER189WP40104 122 aa13.89□□□□□ -0.19
SHU1YHL006C HXT8P40886 569 aa13.89□□□□□ -0.19
SHU1YHL006C TFG2P41896 400 aaPredicted RBP13.89□□□□□ -0.19
SHU1YHL006C YDR222WQ04925 415 aa13.89□□□□□ -0.19
SHU1YHL006C YLR287CQ05881 355 aa13.89□□□□□ -0.19
SHU1YHL006C THI20Q08224 551 aa13.89□□□□□ -0.19
SHU1YHL006C EST1P17214 699 aaPredicted RBP13.88□□□□□ -0.19
SHU1YHL006C KTR4P38131 464 aa13.88□□□□□ -0.19
SHU1YHL006C RKM3P38222 552 aa13.88□□□□□ -0.19
SHU1YHL006C NMD3P38861 518 aaKnown RBP13.88□□□□□ -0.19
SHU1YHL006C SNZ3P43545 298 aa13.88□□□□□ -0.19
SHU1YHL006C VEL1P53058 206 aa13.88□□□□□ -0.19
SHU1YHL006C TRM112P53738 135 aaPredicted RBP13.88□□□□□ -0.19
SHU1YHL006C SNZ2P53824 298 aa13.88□□□□□ -0.19
SHU1YHL006C AIM39Q08223 395 aa13.88□□□□□ -0.19
SHU1YHL006C PUF2Q12221 1075 aaKnown RBP RIP-Chip data13.88□□□□□ -0.19not detected
SHU1YHL006C PUT4P15380 627 aa13.87□□□□□ -0.19
SHU1YHL006C YIH1P25637 258 aa13.87□□□□□ -0.19
SHU1YHL006C JNM1P36224 373 aa13.87□□□□□ -0.19
SHU1YHL006C YAP5P40574 245 aa13.87□□□□□ -0.19
SHU1YHL006C IRA2P19158 3079 aa13.87□□□□□ -0.19
SHU1YHL006C PHO13P19881 312 aa13.86□□□□□ -0.19
SHU1YHL006C MET22P32179 357 aa13.86□□□□□ -0.19
SHU1YHL006C TDA3P38758 523 aa13.86□□□□□ -0.19
SHU1YHL006C UBP7P40453 1071 aa13.86□□□□□ -0.19
SHU1YHL006C KTR6P54070 446 aa13.86□□□□□ -0.19
SHU1YHL006C RPN4Q03465 531 aa13.86□□□□□ -0.19
SHU1YHL006C YMR206WQ03695 313 aa13.86□□□□□ -0.19
SHU1YHL006C RRP6Q12149 733 aaKnown RBP13.86□□□□□ -0.19
SHU1YHL006C MSF1P08425 469 aa13.85□□□□□ -0.19
SHU1YHL006C MRPL10P36520 322 aa13.85□□□□□ -0.19
SHU1YHL006C DUN1P39009 513 aa13.85□□□□□ -0.19
SHU1YHL006C OSW5P40219 148 aa13.85□□□□□ -0.19
SHU1YHL006C RTT101P47050 842 aa13.85□□□□□ -0.19
SHU1YHL006C YJR079WP47126 109 aa13.85□□□□□ -0.19
SHU1YHL006C ELP3Q02908 557 aaKnown RBP13.85□□□□□ -0.19
SHU1YHL006C NDD1Q08887 554 aa13.85□□□□□ -0.19
SHU1YHL006C HMI1Q12039 706 aa13.85□□□□□ -0.19
SHU1YHL006C ARF2P19146 181 aaKnown RBP13.84□□□□□ -0.19
SHU1YHL006C SEC1P30619 724 aaKnown RBP13.84□□□□□ -0.19
SHU1YHL006C YKL050CP35736 922 aa13.84□□□□□ -0.19
SHU1YHL006C URA8P38627 578 aaPredicted RBP13.84□□□□□ -0.19
SHU1YHL006C YMR1P47147 688 aaKnown RBP RIP-Chip data13.84□□□□□ -0.19not detected
SHU1YHL006C YGR283CP53336 341 aaPredicted RBP13.84□□□□□ -0.19
SHU1YHL006C GYL1Q04322 720 aa13.84□□□□□ -0.19
SHU1YHL006C YRR1Q12172 810 aa13.84□□□□□ -0.19
SHU1YHL006C VPS5Q92331 675 aa13.84□□□□□ -0.19
SHU1YHL006C SPO12P17123 173 aa13.83□□□□□ -0.2
SHU1YHL006C SEC6P32844 805 aa13.83□□□□□ -0.2
SHU1YHL006C TCD2P36101 447 aaKnown RBP13.83□□□□□ -0.2
SHU1YHL006C GIP4P39732 760 aa13.83□□□□□ -0.2
SHU1YHL006C YGR111WP53265 400 aa13.83□□□□□ -0.2
SHU1YHL006C COP1P53622 1201 aaKnown RBP13.83□□□□□ -0.2
SHU1YHL006C VPS75P53853 264 aa13.83□□□□□ -0.2
SHU1YHL006C SPO21Q12411 609 aa13.83□□□□□ -0.2
SHU1YHL006C HSF1P10961 833 aa13.82□□□□□ -0.2
SHU1YHL006C ROX1P25042 368 aa13.82□□□□□ -0.2
SHU1YHL006C TMA108P40462 946 aa13.82□□□□□ -0.2
SHU1YHL006C PRP24P49960 444 aaKnown RBP13.82□□□□□ -0.2
SHU1YHL006C INA17Q02888 182 aa13.82□□□□□ -0.2
SHU1YHL006C YCS4Q06156 1176 aa13.82□□□□□ -0.2
SHU1YHL006C SEN1Q00416 2231 aaKnown RBP13.82□□□□□ -0.2
SHU1YHL006C CYC8P14922 966 aa13.81□□□□□ -0.2
SHU1YHL006C GUT1P32190 709 aa13.81□□□□□ -0.2
SHU1YHL006C STE13P33894 931 aa13.81□□□□□ -0.2
SHU1YHL006C GIP1P38229 639 aa13.81□□□□□ -0.2
SHU1YHL006C SMC2P38989 1170 aaKnown RBP13.81□□□□□ -0.2
SHU1YHL006C LYS9P38999 446 aa13.81□□□□□ -0.2
SHU1YHL006C GDH3P39708 457 aa13.81□□□□□ -0.2
SHU1YHL006C BST1P43571 1029 aa13.81□□□□□ -0.2
SHU1YHL006C ARA2Q04212 335 aa13.81□□□□□ -0.2
SHU1YHL006C AAD4Q07747 329 aa13.81□□□□□ -0.2
SHU1YHL006C CSE1P33307 960 aa13.8□□□□□ -0.2
SHU1YHL006C TMN3P40071 706 aa13.8□□□□□ -0.2
SHU1YHL006C SAP185P40856 1058 aa13.8□□□□□ -0.2
SHU1YHL006C STR2P47164 639 aa13.8□□□□□ -0.2
SHU1YHL006C FLC3P53121 802 aa13.8□□□□□ -0.2
SHU1YHL006C ATG9Q12142 997 aa13.8□□□□□ -0.2
SHU1YHL006C MET16P18408 261 aaPredicted RBP13.79□□□□□ -0.2
SHU1YHL006C KNS1P32350 737 aaPredicted RBP13.79□□□□□ -0.2
SHU1YHL006C ABD1P32783 436 aaPredicted RBP13.79□□□□□ -0.2
Retrieved 100 of 5,963 RNA–protein pairs in 187.2 ms