RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 CLCN1P35523 988 aa23.82■■□□□ 1.4
CLN3-230ENST00000568076 RAB11FIP4Q86YS3 637 aa23.81■■□□□ 1.4
CLN3-230ENST00000568076 ANKRD18AQ8IVF6 992 aa23.81■■□□□ 1.4
CLN3-230ENST00000568076 CHMP4CQ96CF2 233 aa23.81■■□□□ 1.4
CLN3-230ENST00000568076 ARMT1Q9H993 441 aa23.81■■□□□ 1.4
CLN3-230ENST00000568076 CASZ1Q86V15 1759 aa23.81■■□□□ 1.4
CLN3-230ENST00000568076 TAF1P21675 1872 aa23.81■■□□□ 1.4
CLN3-230ENST00000568076 ZMYM6O95789 1325 aa23.8■■□□□ 1.4
CLN3-230ENST00000568076 TRDNQ13061 729 aa23.8■■□□□ 1.4
CLN3-230ENST00000568076 FAM182BQ5T319 152 aa23.8■■□□□ 1.4
CLN3-230ENST00000568076 IFNL3Q8IZI9 196 aa23.8■■□□□ 1.4
CLN3-230ENST00000568076 KLHL34Q8N239 644 aa23.8■■□□□ 1.4
CLN3-230ENST00000568076 SRP68Q9UHB9 627 aaKnown RBP23.8■■□□□ 1.4
CLN3-230ENST00000568076 USP21Q9UK80 565 aa23.8■■□□□ 1.4
CLN3-230ENST00000568076 BTAF1O14981 1849 aa23.8■■□□□ 1.4
CLN3-230ENST00000568076 NEDD4P46934 1319 aa23.8■■□□□ 1.4
CLN3-230ENST00000568076 RGL2O15211 777 aa23.8■■□□□ 1.4
CLN3-230ENST00000568076 GUCY1B3Q02153 619 aa23.8■■□□□ 1.4
CLN3-230ENST00000568076 RC3H1Q5TC82 1133 aaKnown RBP23.8■■□□□ 1.4
CLN3-230ENST00000568076 THSD7AQ9UPZ6 1657 aa23.79■■□□□ 1.4
CLN3-230ENST00000568076 A0A1B0GUL6 1792 aa23.79■■□□□ 1.4
CLN3-230ENST00000568076 ZNF804BA4D1E1 1349 aa23.79■■□□□ 1.4
CLN3-230ENST00000568076 RPS6KA4O75676 772 aa23.79■■□□□ 1.4
CLN3-230ENST00000568076 SLC10A5Q5PT55 438 aa23.79■■□□□ 1.4
CLN3-230ENST00000568076 ILDR1Q86SU0 546 aaPredicted RBP23.79■■□□□ 1.4
CLN3-230ENST00000568076 INCENPQ9NQS7 918 aa23.79■■□□□ 1.4
CLN3-230ENST00000568076 BSDC1Q9NW68 430 aaPredicted RBP23.79■■□□□ 1.4
CLN3-230ENST00000568076 NARFQ9UHQ1 456 aa23.79■■□□□ 1.4
CLN3-230ENST00000568076 GSG1L2A8MUP6 293 aa23.78■■□□□ 1.4
CLN3-230ENST00000568076 FTOQ9C0B1 505 aaKnown RBP eCLIP23.78■■□□□ 1.4
CLN3-230ENST00000568076 CFAP45Q9UL16 551 aa23.78■■□□□ 1.4
CLN3-230ENST00000568076 IQSEC3Q9UPP2 1182 aaPredicted RBP23.78■■□□□ 1.4
CLN3-230ENST00000568076 TACC3Q9Y6A5 838 aa23.78■■□□□ 1.4
CLN3-230ENST00000568076 MYH15Q9Y2K3 1946 aa23.78■■□□□ 1.4
CLN3-230ENST00000568076 GOLGA6L4A6NEF3 574 aa23.78■■□□□ 1.4
CLN3-230ENST00000568076 B4E1Z4 1266 aa23.78■■□□□ 1.4
CLN3-230ENST00000568076 SH2B2O14492 632 aaPredicted RBP23.78■■□□□ 1.4
CLN3-230ENST00000568076 PRKAB2O43741 272 aa23.78■■□□□ 1.4
CLN3-230ENST00000568076 GYG1P46976 350 aa23.78■■□□□ 1.4
CLN3-230ENST00000568076 AMIGO3Q86WK7 504 aa23.78■■□□□ 1.4
CLN3-230ENST00000568076 LCORLQ8N3X6 602 aa23.78■■□□□ 1.4
CLN3-230ENST00000568076 CELF1Q92879 486 aaKnown RBP23.78■■□□□ 1.4
CLN3-230ENST00000568076 DACT1Q9NYF0 836 aa23.78■■□□□ 1.4
CLN3-230ENST00000568076 ANGEL1Q9UNK9 670 aaKnown RBP23.78■■□□□ 1.4
CLN3-230ENST00000568076 SENP2Q9HC62 589 aa23.77■■□□□ 1.4
CLN3-230ENST00000568076 MINPP1Q9UNW1 487 aa23.77■■□□□ 1.4
CLN3-230ENST00000568076 NHSQ6T4R5 1651 aa23.76■■□□□ 1.39
CLN3-230ENST00000568076 CEBPZQ03701 1054 aaKnown RBP23.76■■□□□ 1.39
CLN3-230ENST00000568076 UVSSAQ2YD98 709 aa23.76■■□□□ 1.39
CLN3-230ENST00000568076 NAPBQ9H115 298 aa23.76■■□□□ 1.39
CLN3-230ENST00000568076 NUP62CLQ9H1M0 184 aa23.76■■□□□ 1.39
CLN3-230ENST00000568076 PNPLA7Q6ZV29 1317 aa23.76■■□□□ 1.39
CLN3-230ENST00000568076 COL1A1P02452 1464 aaPredicted RBP23.76■■□□□ 1.39
CLN3-230ENST00000568076 C4AP0C0L4 1744 aa23.76■■□□□ 1.39
CLN3-230ENST00000568076 C4BP0C0L5 1744 aa23.76■■□□□ 1.39
CLN3-230ENST00000568076 GNPATO15228 680 aa23.76■■□□□ 1.39
CLN3-230ENST00000568076 DHX16O60231 1041 aaKnown RBP23.76■■□□□ 1.39
CLN3-230ENST00000568076 GTF2E1P29083 439 aaPredicted RBP23.76■■□□□ 1.39
CLN3-230ENST00000568076 CTDSPL2Q05D32 466 aa23.76■■□□□ 1.39
CLN3-230ENST00000568076 UBE4AQ14139 1066 aa23.76■■□□□ 1.39
CLN3-230ENST00000568076 CAMK4Q16566 473 aa23.76■■□□□ 1.39
CLN3-230ENST00000568076 HS1BP3Q53T59 392 aa23.76■■□□□ 1.39
CLN3-230ENST00000568076 OTUD7BQ6GQQ9 843 aa23.76■■□□□ 1.39
CLN3-230ENST00000568076 LRP2BPQ9P2M1 347 aa23.76■■□□□ 1.39
CLN3-230ENST00000568076 IGDCC4Q8TDY8 1250 aa23.75■■□□□ 1.39
CLN3-230ENST00000568076 USP28Q96RU2 1077 aa23.75■■□□□ 1.39
CLN3-230ENST00000568076 ORC3Q9UBD5 711 aaPredicted RBP23.75■■□□□ 1.39
CLN3-230ENST00000568076 RCOR1Q9UKL0 485 aa23.75■■□□□ 1.39
CLN3-230ENST00000568076 ADGRA1Q86SQ6 560 aa23.74■■□□□ 1.39
CLN3-230ENST00000568076 ZSCAN30Q86W11 494 aa23.74■■□□□ 1.39
CLN3-230ENST00000568076 MIGA1Q8NAN2 632 aa23.74■■□□□ 1.39
CLN3-230ENST00000568076 CCNL1Q9UK58 526 aaPredicted RBP23.74■■□□□ 1.39
CLN3-230ENST00000568076 COL24A1Q17RW2 1714 aa23.74■■□□□ 1.39
CLN3-230ENST00000568076 NR1I2O75469 434 aa23.74■■□□□ 1.39
CLN3-230ENST00000568076 SETDB2Q96T68 719 aa23.74■■□□□ 1.39
CLN3-230ENST00000568076 SLC4A4Q9Y6R1 1079 aa23.74■■□□□ 1.39
CLN3-230ENST00000568076 TIAM2Q8IVF5 1701 aa23.73■■□□□ 1.39
CLN3-230ENST00000568076 CPLX1O14810 134 aa23.73■■□□□ 1.39
CLN3-230ENST00000568076 MAP3K11Q16584 847 aa23.73■■□□□ 1.39
CLN3-230ENST00000568076 BICD2Q8TD16 824 aa23.73■■□□□ 1.39
CLN3-230ENST00000568076 DDX19AQ9NUU7 478 aaKnown RBP23.73■■□□□ 1.39
CLN3-230ENST00000568076 SPATA31A6Q5VVP1 1343 aa23.73■■□□□ 1.39
CLN3-230ENST00000568076 GNAT2P19087 354 aa23.72■■□□□ 1.39
CLN3-230ENST00000568076 APOA5Q6Q788 366 aa23.72■■□□□ 1.39
CLN3-230ENST00000568076 C8orf76Q96K31 380 aa23.72■■□□□ 1.39
CLN3-230ENST00000568076 TMEM87BQ96K49 555 aa23.72■■□□□ 1.39
CLN3-230ENST00000568076 NYXQ9GZU5 481 aa23.72■■□□□ 1.39
CLN3-230ENST00000568076 LY9Q9HBG7 655 aa23.72■■□□□ 1.39
CLN3-230ENST00000568076 ZPR1O75312 459 aa23.72■■□□□ 1.39
CLN3-230ENST00000568076 ATL3Q6DD88 541 aa23.72■■□□□ 1.39
CLN3-230ENST00000568076 CCDC24Q8N4L8 307 aa23.72■■□□□ 1.39
CLN3-230ENST00000568076 CLSTN2Q9H4D0 955 aa23.72■■□□□ 1.39
CLN3-230ENST00000568076 GJB4Q9NTQ9 266 aa23.72■■□□□ 1.39
CLN3-230ENST00000568076 RXRAP19793 462 aa23.71■■□□□ 1.39
CLN3-230ENST00000568076 CYP7A1P22680 504 aa23.71■■□□□ 1.39
CLN3-230ENST00000568076 METAP2P50579 478 aaKnown RBP eCLIP23.71■■□□□ 1.39
CLN3-230ENST00000568076 AKNAD1Q5T1N1 836 aa23.71■■□□□ 1.39
CLN3-230ENST00000568076 RBM43Q6ZSC3 357 aaKnown RBP23.71■■□□□ 1.39
CLN3-230ENST00000568076 NBPF5PQ86XG9 351 aaPredicted RBP23.71■■□□□ 1.39
CLN3-230ENST00000568076 FBXO18Q8NFZ0 1043 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms