RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 TRAK1Q9UPV9 953 aa7.37□□□□□ -1.23
VPS41-213ENST00000485955 RAXQ9Y2V3 346 aa7.37□□□□□ -1.23
VPS41-213ENST00000485955 DHX15O43143 795 aaKnown RBP7.36□□□□□ -1.23
VPS41-213ENST00000485955 FSTP19883 344 aa7.36□□□□□ -1.23
VPS41-213ENST00000485955 POU4F3Q15319 338 aa7.36□□□□□ -1.23
VPS41-213ENST00000485955 UVSSAQ2YD98 709 aa7.36□□□□□ -1.23
VPS41-213ENST00000485955 FDX2Q6P4F2 183 aa7.36□□□□□ -1.23
VPS41-213ENST00000485955 FAM20CQ8IXL6 584 aa7.36□□□□□ -1.23
VPS41-213ENST00000485955 SMG8Q8ND04 991 aaKnown RBP7.36□□□□□ -1.23
VPS41-213ENST00000485955 SUGCTQ9HAC7 445 aa7.36□□□□□ -1.23
VPS41-213ENST00000485955 STOML1Q9UBI4 398 aa7.36□□□□□ -1.23
VPS41-213ENST00000485955 HMX2A2RU54 273 aa7.35□□□□□ -1.23
VPS41-213ENST00000485955 PATL2C9JE40 543 aaKnown RBP7.35□□□□□ -1.23
VPS41-213ENST00000485955 SART1O43290 800 aaKnown RBP7.35□□□□□ -1.23
VPS41-213ENST00000485955 TIAF1O95411 115 aa7.35□□□□□ -1.23
VPS41-213ENST00000485955 CYP11A1P05108 521 aa7.35□□□□□ -1.23
VPS41-213ENST00000485955 BMP3P12645 472 aa7.35□□□□□ -1.23
VPS41-213ENST00000485955 DTHD1Q6ZMT9 781 aa7.35□□□□□ -1.23
VPS41-213ENST00000485955 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.35□□□□□ -1.23
VPS41-213ENST00000485955 TRIM42Q8IWZ5 723 aa7.35□□□□□ -1.23
VPS41-213ENST00000485955 Q8N3U1 123 aa7.35□□□□□ -1.23
VPS41-213ENST00000485955 P4HBP07237 508 aaKnown RBP7.34□□□□□ -1.23
VPS41-213ENST00000485955 RPS26P11Q5JNZ5 115 aaPredicted RBP7.34□□□□□ -1.23
VPS41-213ENST00000485955 OSBPL7Q9BZF2 842 aa7.34□□□□□ -1.23
VPS41-213ENST00000485955 C7orf69Q9H7B7 122 aa7.34□□□□□ -1.23
VPS41-213ENST00000485955 CYP4F12Q9HCS2 524 aa7.34□□□□□ -1.23
VPS41-213ENST00000485955 SGO2Q562F6 1265 aa7.33□□□□□ -1.24
VPS41-213ENST00000485955 SND1Q7KZF4 910 aaKnown RBP eCLIP7.33□□□□□ -1.24
VPS41-213ENST00000485955 C3orf58Q8NDZ4 430 aa7.33□□□□□ -1.24
VPS41-213ENST00000485955 PPP4R2Q9NY27 417 aa7.33□□□□□ -1.24
VPS41-213ENST00000485955 EIF4EBP3O60516 100 aaPredicted RBP7.32□□□□□ -1.24
VPS41-213ENST00000485955 SOX4Q06945 474 aaPredicted RBP7.32□□□□□ -1.24
VPS41-213ENST00000485955 BEND4Q6ZU67 534 aa7.32□□□□□ -1.24
VPS41-213ENST00000485955 CLEC10AQ8IUN9 316 aa7.32□□□□□ -1.24
VPS41-213ENST00000485955 C2CD4AQ8NCU7 369 aaPredicted RBP7.32□□□□□ -1.24
VPS41-213ENST00000485955 FAM83CQ9BQN1 747 aa7.32□□□□□ -1.24
VPS41-213ENST00000485955 CORO1BQ9BR76 489 aa7.32□□□□□ -1.24
VPS41-213ENST00000485955 KCNF1Q9H3M0 494 aa7.32□□□□□ -1.24
VPS41-213ENST00000485955 AKAP2Q9Y2D5 859 aa7.32□□□□□ -1.24
VPS41-213ENST00000485955 CDPF1Q6NVV7 123 aa7.31□□□□□ -1.24
VPS41-213ENST00000485955 DDX54Q8TDD1 881 aaKnown RBP7.31□□□□□ -1.24
VPS41-213ENST00000485955 FBF1Q8TES7 1133 aa7.31□□□□□ -1.24
VPS41-213ENST00000485955 WDR89Q96FK6 387 aaPredicted RBP7.31□□□□□ -1.24
VPS41-213ENST00000485955 ZC3H12CQ9C0D7 883 aaKnown RBP7.31□□□□□ -1.24
VPS41-213ENST00000485955 GAS2O43903 313 aaKnown RBP7.3□□□□□ -1.24
VPS41-213ENST00000485955 IGLV1-40P01703 118 aa7.3□□□□□ -1.24
VPS41-213ENST00000485955 ADH5P11766 374 aa7.3□□□□□ -1.24
VPS41-213ENST00000485955 XRCC5P13010 732 aaKnown RBP7.3□□□□□ -1.24
VPS41-213ENST00000485955 MAP4P27816 1152 aaKnown RBP7.3□□□□□ -1.24
VPS41-213ENST00000485955 NFIAQ12857 509 aa7.3□□□□□ -1.24
VPS41-213ENST00000485955 AKAP4Q5JQC9 854 aa7.3□□□□□ -1.24
VPS41-213ENST00000485955 XP32Q5T750 250 aa7.3□□□□□ -1.24
VPS41-213ENST00000485955 RNF43Q68DV7 783 aa7.3□□□□□ -1.24
VPS41-213ENST00000485955 ALG1LQ6GMV1 187 aa7.3□□□□□ -1.24
VPS41-213ENST00000485955 SLC51AQ86UW1 340 aa7.3□□□□□ -1.24
VPS41-213ENST00000485955 STK35Q8TDR2 534 aa7.3□□□□□ -1.24
VPS41-213ENST00000485955 FBLIM1Q8WUP2 373 aa7.3□□□□□ -1.24
VPS41-213ENST00000485955 RNF19AQ9NV58 838 aa7.3□□□□□ -1.24
VPS41-213ENST00000485955 ANKRD33BA6NCL7 494 aa7.29□□□□□ -1.24
VPS41-213ENST00000485955 AOC2O75106 756 aa7.29□□□□□ -1.24
VPS41-213ENST00000485955 LDHBP07195 334 aaKnown RBP7.29□□□□□ -1.24
VPS41-213ENST00000485955 AP3B2Q13367 1082 aa7.29□□□□□ -1.24
VPS41-213ENST00000485955 CCDC86Q9H6F5 360 aaKnown RBP7.29□□□□□ -1.24
VPS41-213ENST00000485955 ZFYVE1Q9HBF4 777 aa7.29□□□□□ -1.24
VPS41-213ENST00000485955 RAD18Q9NS91 495 aa7.29□□□□□ -1.24
VPS41-213ENST00000485955 TMEM39AQ9NV64 488 aa7.29□□□□□ -1.24
VPS41-213ENST00000485955 GPN3Q9UHW5 284 aaPredicted RBP7.29□□□□□ -1.24
VPS41-213ENST00000485955 RNF112Q9ULX5 631 aa7.29□□□□□ -1.24
VPS41-213ENST00000485955 HIF3AQ9Y2N7 669 aa7.29□□□□□ -1.24
VPS41-213ENST00000485955 ACTL7BQ9Y614 415 aa7.29□□□□□ -1.24
VPS41-213ENST00000485955 SCO2A0A1W2PP80 73 aa7.28□□□□□ -1.24
VPS41-213ENST00000485955 LIG1P18858 919 aa7.28□□□□□ -1.24
VPS41-213ENST00000485955 RXRBP28702 533 aa7.28□□□□□ -1.24
VPS41-213ENST00000485955 USP11P51784 963 aa7.28□□□□□ -1.24
VPS41-213ENST00000485955 PDE3AQ14432 1141 aa7.28□□□□□ -1.24
VPS41-213ENST00000485955 ARTNQ5T4W7 220 aa7.28□□□□□ -1.24
VPS41-213ENST00000485955 PDZD3Q86UT5 571 aa7.28□□□□□ -1.24
VPS41-213ENST00000485955 SHISA5Q8N114 240 aa7.28□□□□□ -1.24
VPS41-213ENST00000485955 WDR18Q9BV38 432 aa7.28□□□□□ -1.24
VPS41-213ENST00000485955 PPP1R9AQ9ULJ8 1098 aa7.28□□□□□ -1.24
VPS41-213ENST00000485955 HYAL3O43820 417 aaPredicted RBP7.27□□□□□ -1.25
VPS41-213ENST00000485955 ZNF862O60290 1169 aa7.27□□□□□ -1.25
VPS41-213ENST00000485955 GSTP1P09211 210 aaKnown RBP7.27□□□□□ -1.25
VPS41-213ENST00000485955 GSTT1P30711 240 aa7.27□□□□□ -1.25
VPS41-213ENST00000485955 ATP2B2Q01814 1243 aa7.27□□□□□ -1.25
VPS41-213ENST00000485955 DNAJC14Q6Y2X3 702 aaPredicted RBP7.27□□□□□ -1.25
VPS41-213ENST00000485955 ZDHHC13Q8IUH4 622 aa7.27□□□□□ -1.25
VPS41-213ENST00000485955 DBNDD2Q9BQY9 259 aa7.27□□□□□ -1.25
VPS41-213ENST00000485955 FAM105AQ9NUU6 356 aa7.27□□□□□ -1.25
VPS41-213ENST00000485955 GSC2O15499 205 aa7.26□□□□□ -1.25
VPS41-213ENST00000485955 FBXO24O75426 580 aa7.26□□□□□ -1.25
VPS41-213ENST00000485955 MED26O95402 600 aa7.26□□□□□ -1.25
VPS41-213ENST00000485955 PPP2R3AQ06190 1150 aa7.26□□□□□ -1.25
VPS41-213ENST00000485955 MPRIPQ6WCQ1 1025 aa7.26□□□□□ -1.25
VPS41-213ENST00000485955 TPTE2Q6XPS3 522 aa7.26□□□□□ -1.25
VPS41-213ENST00000485955 DYMQ7RTS9 669 aa7.26□□□□□ -1.25
VPS41-213ENST00000485955 MFSD14AQ96MC6 490 aa7.26□□□□□ -1.25
VPS41-213ENST00000485955 NECAB3Q96P71 396 aaPredicted RBP7.26□□□□□ -1.25
VPS41-213ENST00000485955 SRCIN1Q9C0H9 1055 aa7.26□□□□□ -1.25
VPS41-213ENST00000485955 GSX1Q9H4S2 264 aaPredicted RBP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms