RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 AEBP2Q6ZN18 517 aaPredicted RBP24.39■■□□□ 1.49
VPS41-213ENST00000485955 CHIC1Q5VXU3 224 aa23.55■■□□□ 1.36
VPS41-213ENST00000485955 PHF23Q9BUL5 403 aaPredicted RBP20.77■□□□□ 0.92
VPS41-213ENST00000485955 SENP3Q9H4L4 574 aaPredicted RBP20.61■□□□□ 0.89
VPS41-213ENST00000485955 FOXD1Q16676 465 aa19.23■□□□□ 0.67
VPS41-213ENST00000485955 PLPPR3Q6T4P5 718 aa19.01■□□□□ 0.63
VPS41-213ENST00000485955 PPP6R1Q9UPN7 881 aa18.41■□□□□ 0.54
VPS41-213ENST00000485955 ADRA2BP18089 450 aa18.36■□□□□ 0.53
VPS41-213ENST00000485955 PIAS4Q8N2W9 510 aaPredicted RBP18.05■□□□□ 0.48
VPS41-213ENST00000485955 MSH5O43196 834 aa17.72■□□□□ 0.43
VPS41-213ENST00000485955 POTEDQ86YR6 584 aa17.02■□□□□ 0.32
VPS41-213ENST00000485955 PPP4R3CPQ6ZMV5 832 aa16.76■□□□□ 0.27
VPS41-213ENST00000485955 MAPK8IP2Q13387 824 aaPredicted RBP16.74■□□□□ 0.27
VPS41-213ENST00000485955 SCAF1Q9H7N4 1312 aaKnown RBP16.68■□□□□ 0.26
VPS41-213ENST00000485955 DMRT2Q9Y5R5 561 aa16.45■□□□□ 0.22
VPS41-213ENST00000485955 CNKSR2Q8WXI2 1034 aa16.3■□□□□ 0.2
VPS41-213ENST00000485955 KCNA4P22459 653 aa16.19■□□□□ 0.18
VPS41-213ENST00000485955 NCBP3Q53F19 620 aaKnown RBP16.19■□□□□ 0.18
VPS41-213ENST00000485955 NPM3O75607 178 aaKnown RBP16.04■□□□□ 0.16
VPS41-213ENST00000485955 HOXD11P31277 338 aaPredicted RBP16.04■□□□□ 0.16
VPS41-213ENST00000485955 RNF216Q9NWF9 866 aaPredicted RBP16.03■□□□□ 0.16
VPS41-213ENST00000485955 DCAF8L1A6NGE4 600 aa15.75■□□□□ 0.11
VPS41-213ENST00000485955 DNAJC5BQ9UF47 199 aa15.55■□□□□ 0.08
VPS41-213ENST00000485955 SLC4A1APQ9BWU0 796 aaKnown RBP15.33■□□□□ 0.04
VPS41-213ENST00000485955 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.27■□□□□ 0.046e-6■□□□□ 8.2
VPS41-213ENST00000485955 SLC4A2P04920 1241 aa15.23■□□□□ 0.03
VPS41-213ENST00000485955 RNF39Q9H2S5 420 aa15.22■□□□□ 0.03
VPS41-213ENST00000485955 U3KPZ7 1027 aaPredicted RBP15.04■□□□□ -0
VPS41-213ENST00000485955 C1QBPQ07021 282 aaKnown RBP14.99□□□□□ -0.01
VPS41-213ENST00000485955 CACNB1Q02641 598 aaPredicted RBP14.94□□□□□ -0.02
VPS41-213ENST00000485955 ZBTB22O15209 634 aa14.92□□□□□ -0.02
VPS41-213ENST00000485955 FOXD4L1Q9NU39 408 aa14.89□□□□□ -0.03
VPS41-213ENST00000485955 MYCNP04198 464 aaPredicted RBP14.76□□□□□ -0.05
VPS41-213ENST00000485955 EHMT2Q96KQ7 1210 aa14.7□□□□□ -0.06
VPS41-213ENST00000485955 SPINK5Q9NQ38 1064 aaPredicted RBP14.7□□□□□ -0.06
VPS41-213ENST00000485955 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.68□□□□□ -0.06
VPS41-213ENST00000485955 HNRNPUL2Q1KMD3 747 aaKnown RBP14.68□□□□□ -0.06
VPS41-213ENST00000485955 CSRNP3Q8WYN3 585 aa14.66□□□□□ -0.06
VPS41-213ENST00000485955 SAMD1Q6SPF0 538 aaPredicted RBP14.64□□□□□ -0.07
VPS41-213ENST00000485955 CAPN15O75808 1086 aa14.6□□□□□ -0.07
VPS41-213ENST00000485955 APLP2Q06481 763 aa14.53□□□□□ -0.08
VPS41-213ENST00000485955 TRHP20396 242 aaPredicted RBP14.5□□□□□ -0.09
VPS41-213ENST00000485955 ATF5Q9Y2D1 282 aaPredicted RBP14.5□□□□□ -0.09
VPS41-213ENST00000485955 DSG3P32926 999 aa14.44□□□□□ -0.1
VPS41-213ENST00000485955 ZNF219Q9P2Y4 722 aaPredicted RBP14.43□□□□□ -0.1
VPS41-213ENST00000485955 ATXN8OSP0DMR3 200 aa14.37□□□□□ -0.11
VPS41-213ENST00000485955 ABCB7O75027 752 aa14.33□□□□□ -0.12
VPS41-213ENST00000485955 POLA2Q14181 598 aa14.24□□□□□ -0.13
VPS41-213ENST00000485955 ZBTB12Q9Y330 459 aaPredicted RBP13.87□□□□□ -0.19
VPS41-213ENST00000485955 MKRN4PQ13434 485 aaPredicted RBP13.84□□□□□ -0.19
VPS41-213ENST00000485955 FBLN2P98095 1184 aa13.77□□□□□ -0.21
VPS41-213ENST00000485955 OSCARQ8IYS5 282 aa13.75□□□□□ -0.21
VPS41-213ENST00000485955 RBM42Q9BTD8 480 aaKnown RBP13.66□□□□□ -0.22
VPS41-213ENST00000485955 SPDYE2BA6NHP3 402 aa13.53□□□□□ -0.24
VPS41-213ENST00000485955 SPDYE6P0CI01 402 aa13.53□□□□□ -0.24
VPS41-213ENST00000485955 SPDYE2Q495Y8 402 aa13.53□□□□□ -0.24
VPS41-213ENST00000485955 AKT1S1Q96B36 256 aa13.49□□□□□ -0.25
VPS41-213ENST00000485955 ZNF692Q9BU19 519 aaPredicted RBP13.49□□□□□ -0.25
VPS41-213ENST00000485955 SSUH2Q9Y2M2 353 aa13.43□□□□□ -0.26
VPS41-213ENST00000485955 REM2Q8IYK8 340 aaPredicted RBP13.41□□□□□ -0.26
VPS41-213ENST00000485955 SPDYE4A6NLX3 237 aa13.38□□□□□ -0.27
VPS41-213ENST00000485955 POTEHQ6S545 545 aa13.34□□□□□ -0.27
VPS41-213ENST00000485955 PABPN1Q86U42 306 aaKnown RBP eCLIP13.31□□□□□ -0.28
VPS41-213ENST00000485955 PITPNM1O00562 1244 aa13.25□□□□□ -0.29
VPS41-213ENST00000485955 CHRDL2Q6WN34 429 aa13.24□□□□□ -0.29
VPS41-213ENST00000485955 FKBP8Q14318 412 aa13.22□□□□□ -0.29
VPS41-213ENST00000485955 SPDYE1Q8NFV5 336 aaPredicted RBP13.17□□□□□ -0.3
VPS41-213ENST00000485955 CLEC11AQ9Y240 323 aa13.16□□□□□ -0.3
VPS41-213ENST00000485955 PROM2Q8N271 834 aa13.14□□□□□ -0.31
VPS41-213ENST00000485955 FXR2P51116 673 aaKnown RBP eCLIP13.04□□□□□ -0.32
VPS41-213ENST00000485955 PIP4P2Q8N4L2 257 aa13.04□□□□□ -0.32
VPS41-213ENST00000485955 PRR29P0C7W0 189 aa13.01□□□□□ -0.33
VPS41-213ENST00000485955 STAG3Q9UJ98 1225 aa12.98□□□□□ -0.33
VPS41-213ENST00000485955 PRKAR2AP13861 404 aaKnown RBP12.91□□□□□ -0.34
VPS41-213ENST00000485955 CHADLQ6NUI6 762 aa12.91□□□□□ -0.34
VPS41-213ENST00000485955 CREBZFQ9NS37 354 aa12.84□□□□□ -0.35
VPS41-213ENST00000485955 FBXO3Q9UK99 471 aa12.73□□□□□ -0.37
VPS41-213ENST00000485955 FARP1Q9Y4F1 1045 aaPredicted RBP12.73□□□□□ -0.37
VPS41-213ENST00000485955 MIER1Q8N108 512 aa12.71□□□□□ -0.37
VPS41-213ENST00000485955 MNX1P50219 401 aaPredicted RBP12.7□□□□□ -0.38
VPS41-213ENST00000485955 HAX1O00165 279 aa12.67□□□□□ -0.38
VPS41-213ENST00000485955 EVX2Q03828 476 aa12.64□□□□□ -0.39
VPS41-213ENST00000485955 PLCD3Q8N3E9 789 aa12.64□□□□□ -0.39
VPS41-213ENST00000485955 VASPP50552 380 aaPredicted RBP12.62□□□□□ -0.39
VPS41-213ENST00000485955 C19orf67A6NJJ6 358 aa12.6□□□□□ -0.39
VPS41-213ENST00000485955 PLEKHG5O94827 1062 aa12.56□□□□□ -0.4
VPS41-213ENST00000485955 NPM1P06748 294 aaKnown RBP eCLIP12.54□□□□□ -0.4
VPS41-213ENST00000485955 CD44P16070 742 aaKnown RBP12.52□□□□□ -0.41
VPS41-213ENST00000485955 IFNLR1Q8IU57 520 aaPredicted RBP12.49□□□□□ -0.41
VPS41-213ENST00000485955 ZBTB47Q9UFB7 747 aaPredicted RBP12.46□□□□□ -0.41
VPS41-213ENST00000485955 SP7Q8TDD2 431 aaPredicted RBP12.45□□□□□ -0.42
VPS41-213ENST00000485955 KLHL34Q8N239 644 aa12.44□□□□□ -0.42
VPS41-213ENST00000485955 NUBP1P53384 320 aa12.43□□□□□ -0.42
VPS41-213ENST00000485955 RASEFQ8IZ41 740 aa12.43□□□□□ -0.42
VPS41-213ENST00000485955 ZRANB1Q9UGI0 708 aa12.43□□□□□ -0.42
VPS41-213ENST00000485955 TSPYL2Q9H2G4 693 aaPredicted RBP12.4□□□□□ -0.42
VPS41-213ENST00000485955 PAK3O75914 559 aaPredicted RBP12.35□□□□□ -0.43
VPS41-213ENST00000485955 ZNF579Q8NAF0 562 aaKnown RBP12.34□□□□□ -0.43
VPS41-213ENST00000485955 PHF12Q96QT6 1004 aa12.32□□□□□ -0.44
VPS41-213ENST00000485955 GABBR2O75899 941 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms