RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 ZNF652Q9Y2D9 606 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 CARMIL2Q6F5E8 1435 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 MAP3K12Q12852 859 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 DENND2CQ68D51 928 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 KCNG4Q8TDN1 519 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 NOLC1Q14978 699 aaKnown RBP eCLIP9.97□□□□□ -0.81
NIPBL-202ENST00000448238 TAF11Q15544 211 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 FBXO41Q8TF61 875 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 VEZTQ9HBM0 779 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 STMN3Q9NZ72 180 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 PPP1R1BQ9UD71 204 aaPredicted RBP9.97□□□□□ -0.81
NIPBL-202ENST00000448238 NMIQ13287 307 aaPredicted RBP9.97□□□□□ -0.81
NIPBL-202ENST00000448238 GJC2Q5T442 439 aaPredicted RBP9.97□□□□□ -0.81
NIPBL-202ENST00000448238 JADE1Q6IE81 842 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 ZNF449Q6P9G9 518 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 PAXIP1Q6ZW49 1069 aaPredicted RBP9.97□□□□□ -0.81
NIPBL-202ENST00000448238 MRFAP1L1Q96HT8 127 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 PPP1R2P41236 205 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 SYKP43405 635 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 FLOT2Q14254 428 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 RBSNQ9H1K0 784 aa9.96□□□□□ -0.81
NIPBL-202ENST00000448238 IDH1O75874 414 aaKnown RBP9.96□□□□□ -0.81
NIPBL-202ENST00000448238 CHD1LQ86WJ1 897 aa9.96□□□□□ -0.81
NIPBL-202ENST00000448238 ABTB1Q969K4 478 aaPredicted RBP9.96□□□□□ -0.81
NIPBL-202ENST00000448238 BZW2Q9Y6E2 419 aaKnown RBP9.96□□□□□ -0.81
NIPBL-202ENST00000448238 SERPINB6P35237 376 aa9.96□□□□□ -0.81
NIPBL-202ENST00000448238 OCA2Q04671 838 aa9.96□□□□□ -0.81
NIPBL-202ENST00000448238 DUSP27Q5VZP5 1158 aa9.96□□□□□ -0.81
NIPBL-202ENST00000448238 MAD1L1Q9Y6D9 718 aa9.96□□□□□ -0.81
NIPBL-202ENST00000448238 ESYT2A0FGR8 921 aa9.96□□□□□ -0.82
NIPBL-202ENST00000448238 ATF3P18847 181 aa9.96□□□□□ -0.82
NIPBL-202ENST00000448238 SYT1P21579 422 aa9.96□□□□□ -0.82
NIPBL-202ENST00000448238 TRIML1Q8N9V2 468 aa9.96□□□□□ -0.82
NIPBL-202ENST00000448238 LEO1Q8WVC0 666 aaPredicted RBP9.96□□□□□ -0.82
NIPBL-202ENST00000448238 STAC3Q96MF2 364 aa9.96□□□□□ -0.82
NIPBL-202ENST00000448238 PDZRN3Q9UPQ7 1066 aa9.96□□□□□ -0.82
NIPBL-202ENST00000448238 H0YC42 278 aa9.96□□□□□ -0.82
NIPBL-202ENST00000448238 ZNF213O14771 459 aa9.96□□□□□ -0.82
NIPBL-202ENST00000448238 PDE6AP16499 860 aa9.96□□□□□ -0.82
NIPBL-202ENST00000448238 PPP6R3Q5H9R7 873 aaPredicted RBP9.96□□□□□ -0.82
NIPBL-202ENST00000448238 PODNQ7Z5L7 613 aa9.96□□□□□ -0.82
NIPBL-202ENST00000448238 RPL13P26373 211 aaKnown RBP9.96□□□□□ -0.82
NIPBL-202ENST00000448238 PDE4BQ07343 736 aa9.96□□□□□ -0.82
NIPBL-202ENST00000448238 ENAHQ8N8S7 591 aaPredicted RBP9.96□□□□□ -0.82
NIPBL-202ENST00000448238 HOMER3Q9NSC5 361 aa9.96□□□□□ -0.82
NIPBL-202ENST00000448238 MMEL1Q495T6 779 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 KRT80Q6KB66 452 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 FMNL1O95466 1100 aaPredicted RBP9.95□□□□□ -0.82
NIPBL-202ENST00000448238 IFNA8P32881 189 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 NBPF6Q5VWK0 638 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 NBPF4Q96M43 638 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 NOX5Q96PH1 765 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 EIF4G1Q04637 1599 aaKnown RBP9.95□□□□□ -0.82
NIPBL-202ENST00000448238 CLCN1P35523 988 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 RNASELQ05823 741 aaKnown RBP9.95□□□□□ -0.82
NIPBL-202ENST00000448238 MINDY4BA8MYZ0 360 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 C8orf74Q6P047 294 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 PHKBQ93100 1093 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 MRPS26Q9BYN8 205 aaKnown RBP9.95□□□□□ -0.82
NIPBL-202ENST00000448238 NBPF3Q9H094 633 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 NEUROG2Q9H2A3 272 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 DDX21Q9NR30 783 aaKnown RBP eCLIP9.95□□□□□ -0.82
NIPBL-202ENST00000448238 ZNF277Q9NRM2 450 aaPredicted RBP9.95□□□□□ -0.82
NIPBL-202ENST00000448238 TMEM110-MUSTN1A8MSY1 372 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 ANKRD35Q8N283 1001 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 SIL1Q9H173 461 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 MED4Q9NPJ6 270 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 ABCF2Q9UG63 623 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 MAIP1Q8WWC4 291 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 PNMA2Q9UL42 364 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 IRX5P78411 483 aaPredicted RBP9.95□□□□□ -0.82
NIPBL-202ENST00000448238 HDGFL1Q5TGJ6 251 aa9.95□□□□□ -0.82
NIPBL-202ENST00000448238 BAG2O95816 211 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 APOA1P02647 267 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 GSTA1P08263 222 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 GSTA2P09210 222 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 BACH2Q9BYV9 841 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 SH2D4AQ9H788 454 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 ATP6V0A4Q9HBG4 840 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 C6orf50Q9HD87 102 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 BAZ2BQ9UIF8 2168 aaKnown RBP9.94□□□□□ -0.82
NIPBL-202ENST00000448238 CALM1P0DP23 149 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 CALM2P0DP24 149 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 CALM3P0DP25 149 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 KRT15P19012 456 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 PTGS1P23219 599 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 MCM7P33993 719 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 MAP3K10Q02779 954 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 LIN9Q5TKA1 542 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 ZNF280CQ8ND82 737 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 PPWD1Q96BP3 646 aaKnown RBP9.94□□□□□ -0.82
NIPBL-202ENST00000448238 NAP1L4Q99733 375 aaKnown RBP9.94□□□□□ -0.82
NIPBL-202ENST00000448238 NLRP2Q9NX02 1062 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 RAD50Q92878 1312 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 ST20-MTHFSA0A0A6YYL1 179 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 RFX1P22670 979 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 GJC1P36383 396 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.94□□□□□ -0.82
NIPBL-202ENST00000448238 ZNF569Q5MCW4 686 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 RNF207Q6ZRF8 634 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms