RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 MUC7Q8TAX7 377 aa9.98□□□□□ -0.81
CPSF1-204ENST00000529288 PALMDQ9NP74 551 aa9.98□□□□□ -0.81
CPSF1-204ENST00000529288 KCNK7Q9Y2U2 307 aa9.98□□□□□ -0.81
CPSF1-204ENST00000529288 HUWE1Q7Z6Z7 4374 aaKnown RBP9.98□□□□□ -0.81
CPSF1-204ENST00000529288 SHISA3A0PJX4 238 aa9.97□□□□□ -0.81
CPSF1-204ENST00000529288 SMIM30A4D0T7 59 aa9.97□□□□□ -0.81
CPSF1-204ENST00000529288 MPPED1O15442 326 aa9.97□□□□□ -0.81
CPSF1-204ENST00000529288 SYNJ2BPP57105 145 aa9.97□□□□□ -0.81
CPSF1-204ENST00000529288 TNXAQ16473 311 aa9.97□□□□□ -0.81
CPSF1-204ENST00000529288 SGPP2Q8IWX5 399 aa9.97□□□□□ -0.81
CPSF1-204ENST00000529288 ACOT12Q8WYK0 555 aa9.97□□□□□ -0.81
CPSF1-204ENST00000529288 C5orf30Q96GV9 206 aa9.97□□□□□ -0.81
CPSF1-204ENST00000529288 DCUN1D5Q9BTE7 237 aa9.97□□□□□ -0.81
CPSF1-204ENST00000529288 YTHDF1Q9BYJ9 559 aaKnown RBP9.97□□□□□ -0.81
CPSF1-204ENST00000529288 ATG5Q9H1Y0 275 aa9.97□□□□□ -0.81
CPSF1-204ENST00000529288 Q9H521 79 aa9.97□□□□□ -0.81
CPSF1-204ENST00000529288 NDUFB11Q9NX14 153 aa9.97□□□□□ -0.81
CPSF1-204ENST00000529288 TRBV6-7A0A0A0MS04 114 aa9.96□□□□□ -0.82
CPSF1-204ENST00000529288 METTL21EPA6NDL7 271 aa9.96□□□□□ -0.82
CPSF1-204ENST00000529288 MSGN1A6NI15 193 aa9.96□□□□□ -0.82
CPSF1-204ENST00000529288 SRRM4A7MD48 611 aaKnown RBP9.96□□□□□ -0.82
CPSF1-204ENST00000529288 H3BUA1 57 aa9.96□□□□□ -0.82
CPSF1-204ENST00000529288 CRYZL1O95825 349 aa9.96□□□□□ -0.82
CPSF1-204ENST00000529288 CRYGBP07316 175 aa9.96□□□□□ -0.82
CPSF1-204ENST00000529288 IGHV4-30-4P0DP06 118 aa9.96□□□□□ -0.82
CPSF1-204ENST00000529288 HIST1H1DP16402 221 aaKnown RBP9.96□□□□□ -0.82
CPSF1-204ENST00000529288 RAB3BP20337 219 aa9.96□□□□□ -0.82
CPSF1-204ENST00000529288 SSBP2P81877 361 aaPredicted RBP9.96□□□□□ -0.82
CPSF1-204ENST00000529288 TATDN3Q17R31 274 aa9.96□□□□□ -0.82
CPSF1-204ENST00000529288 VMA21Q3ZAQ7 101 aa9.96□□□□□ -0.82
CPSF1-204ENST00000529288 IDO2Q6ZQW0 420 aa9.96□□□□□ -0.82
CPSF1-204ENST00000529288 CABLES2Q9BTV7 478 aa9.96□□□□□ -0.82
CPSF1-204ENST00000529288 ST6GALNAC5Q9BVH7 336 aa9.96□□□□□ -0.82
CPSF1-204ENST00000529288 PEF1Q9UBV8 284 aaKnown RBP9.96□□□□□ -0.82
CPSF1-204ENST00000529288 ADAM30Q9UKF2 790 aa9.96□□□□□ -0.82
CPSF1-204ENST00000529288 IFITM5A6NNB3 132 aa9.95□□□□□ -0.82
CPSF1-204ENST00000529288 MFNGO00587 321 aa9.95□□□□□ -0.82
CPSF1-204ENST00000529288 IGLV1-51P01701 117 aa9.95□□□□□ -0.82
CPSF1-204ENST00000529288 TRBV12-3P01733 135 aa9.95□□□□□ -0.82
CPSF1-204ENST00000529288 RRASP10301 218 aa9.95□□□□□ -0.82
CPSF1-204ENST00000529288 LYL1P12980 280 aa9.95□□□□□ -0.82
CPSF1-204ENST00000529288 AADACP22760 399 aa9.95□□□□□ -0.82
CPSF1-204ENST00000529288 TAGLNQ01995 201 aaKnown RBP9.95□□□□□ -0.82
CPSF1-204ENST00000529288 TMEM177Q53S58 311 aa9.95□□□□□ -0.82
CPSF1-204ENST00000529288 CASC10Q5T4H9 136 aa9.95□□□□□ -0.82
CPSF1-204ENST00000529288 ZFAND6Q6FIF0 208 aa9.95□□□□□ -0.82
CPSF1-204ENST00000529288 C22orf42Q6IC83 251 aa9.95□□□□□ -0.82
CPSF1-204ENST00000529288 ZNF773Q6PK81 442 aa9.95□□□□□ -0.82
CPSF1-204ENST00000529288 OR9G4Q8NGQ1 327 aa9.95□□□□□ -0.82
CPSF1-204ENST00000529288 TMEM68Q96MH6 324 aa9.95□□□□□ -0.82
CPSF1-204ENST00000529288 TINAGL1Q9GZM7 467 aaPredicted RBP9.95□□□□□ -0.82
CPSF1-204ENST00000529288 ELF5Q9UKW6 265 aaPredicted RBP9.95□□□□□ -0.82
CPSF1-204ENST00000529288 IGKV1D-8A0A087WSZ0 117 aa9.94□□□□□ -0.82
CPSF1-204ENST00000529288 TRAV1-2A0A0B4J238 106 aa9.94□□□□□ -0.82
CPSF1-204ENST00000529288 RAB27BO00194 218 aa9.94□□□□□ -0.82
CPSF1-204ENST00000529288 TUSC2O75896 110 aa9.94□□□□□ -0.82
CPSF1-204ENST00000529288 ACTL6BO94805 426 aa9.94□□□□□ -0.82
CPSF1-204ENST00000529288 PRH1P02810 166 aa9.94□□□□□ -0.82
CPSF1-204ENST00000529288 RAB6AP20340 208 aa9.94□□□□□ -0.82
CPSF1-204ENST00000529288 KLF5Q13887 457 aaPredicted RBP9.94□□□□□ -0.82
CPSF1-204ENST00000529288 RPEL1Q2QD12 228 aa9.94□□□□□ -0.82
CPSF1-204ENST00000529288 CDNFQ49AH0 187 aa9.94□□□□□ -0.82
CPSF1-204ENST00000529288 KCTD21Q4G0X4 260 aa9.94□□□□□ -0.82
CPSF1-204ENST00000529288 OR2B11Q5JQS5 317 aa9.94□□□□□ -0.82
CPSF1-204ENST00000529288 Q8N1Y9 231 aa9.94□□□□□ -0.82
CPSF1-204ENST00000529288 ADTRPQ96IZ2 230 aa9.94□□□□□ -0.82
CPSF1-204ENST00000529288 TUBA4BQ9H853 241 aa9.94□□□□□ -0.82
CPSF1-204ENST00000529288 TRDV1A0A1B0GX56 115 aa9.93□□□□□ -0.82
CPSF1-204ENST00000529288 LINC00473A8K010 186 aa9.93□□□□□ -0.82
CPSF1-204ENST00000529288 H0Y980 276 aa9.93□□□□□ -0.82
CPSF1-204ENST00000529288 FCGR3BO75015 233 aa9.93□□□□□ -0.82
CPSF1-204ENST00000529288 OR9G9P0C7N8 305 aa9.93□□□□□ -0.82
CPSF1-204ENST00000529288 DUTP33316 252 aaKnown RBP9.93□□□□□ -0.82
CPSF1-204ENST00000529288 UBE2KP61086 200 aa9.93□□□□□ -0.82
CPSF1-204ENST00000529288 DYRK1AQ13627 763 aa9.93□□□□□ -0.82
CPSF1-204ENST00000529288 PRSS8Q16651 343 aa9.93□□□□□ -0.82
CPSF1-204ENST00000529288 ZNF343Q6P1L6 599 aa9.93□□□□□ -0.82
CPSF1-204ENST00000529288 NR2C2APQ86WQ0 139 aa9.93□□□□□ -0.82
CPSF1-204ENST00000529288 H1FOOQ8IZA3 346 aaPredicted RBP9.93□□□□□ -0.82
CPSF1-204ENST00000529288 TEX45Q8NA69 505 aa9.93□□□□□ -0.82
CPSF1-204ENST00000529288 USMG5Q96IX5 58 aa9.93□□□□□ -0.82
CPSF1-204ENST00000529288 GAR1Q9NY12 217 aaKnown RBP9.93□□□□□ -0.82
CPSF1-204ENST00000529288 GALP22466 123 aa9.92□□□□□ -0.82
CPSF1-204ENST00000529288 NFYAP23511 347 aaPredicted RBP9.92□□□□□ -0.82
CPSF1-204ENST00000529288 RHOGP84095 191 aa9.92□□□□□ -0.82
CPSF1-204ENST00000529288 ATP5G2Q06055 141 aa9.92□□□□□ -0.82
CPSF1-204ENST00000529288 GTSCR1Q86UQ5 136 aa9.92□□□□□ -0.82
CPSF1-204ENST00000529288 SRSF12Q8WXF0 261 aaKnown RBP9.92□□□□□ -0.82
CPSF1-204ENST00000529288 FCGR1BQ92637 280 aa9.92□□□□□ -0.82
CPSF1-204ENST00000529288 SNAPC3Q92966 411 aa9.92□□□□□ -0.82
CPSF1-204ENST00000529288 RBMXL2O75526 392 aaKnown RBP9.91□□□□□ -0.82
CPSF1-204ENST00000529288 CSN3P07498 182 aa9.91□□□□□ -0.82
CPSF1-204ENST00000529288 SAA1P0DJI8 122 aaPredicted RBP9.91□□□□□ -0.82
CPSF1-204ENST00000529288 PSMB9P28065 219 aa9.91□□□□□ -0.82
CPSF1-204ENST00000529288 EXOSC2Q13868 293 aaKnown RBP9.91□□□□□ -0.82
CPSF1-204ENST00000529288 ARL6IP1Q15041 203 aa9.91□□□□□ -0.82
CPSF1-204ENST00000529288 MRGPRG-AS1Q2M3A8 158 aa9.91□□□□□ -0.82
CPSF1-204ENST00000529288 C10orf55Q5SWW7 151 aa9.91□□□□□ -0.82
CPSF1-204ENST00000529288 IL34Q6ZMJ4 242 aa9.91□□□□□ -0.82
CPSF1-204ENST00000529288 KCTD9Q7L273 389 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms