RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ZNF221Q9UK13 617 aa10.83□□□□□ -0.68
SHMT2-219ENST00000555563 SPATA2Q9UM82 520 aa10.83□□□□□ -0.68
SHMT2-219ENST00000555563 TRRAPQ9Y4A5 3859 aa10.83□□□□□ -0.68
SHMT2-219ENST00000555563 TRAV18A0A075B6X5 111 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 A0A0A6YYH2 397 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 TCRBV4S1A1TA0A5B7 111 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 A6NJ64 397 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 M0R1X1 148 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 AP4M1O00189 453 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 NBR2O15453 112 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 OPN1MWP04001 364 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 OR8U9P0C7N5 309 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 OPN1MW2P0DN77 364 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 OPN1MW3P0DN78 364 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 SOX6P35712 828 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 VBP1P61758 197 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 PITPNAQ00169 270 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 PDLIM3Q53GG5 364 aaPredicted RBP10.82□□□□□ -0.68
SHMT2-219ENST00000555563 KHDC1LQ5JSQ8 128 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 H1FOOQ8IZA3 346 aaPredicted RBP10.82□□□□□ -0.68
SHMT2-219ENST00000555563 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.82□□□□□ -0.68
SHMT2-219ENST00000555563 OR8U1Q8NH10 309 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 C5orf30Q96GV9 206 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 ST6GALNAC5Q9BVH7 336 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 DCSTAMPQ9H295 470 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 ZNF107Q9UII5 783 aaPredicted RBP10.82□□□□□ -0.68
SHMT2-219ENST00000555563 WASHC3Q9Y3C0 194 aa10.82□□□□□ -0.68
SHMT2-219ENST00000555563 H7C2Y5 167 aa10.81□□□□□ -0.68
SHMT2-219ENST00000555563 NDUFA3O95167 84 aa10.81□□□□□ -0.68
SHMT2-219ENST00000555563 TFAP2AP05549 437 aa10.81□□□□□ -0.68
SHMT2-219ENST00000555563 LINC00205P59089 165 aa10.81□□□□□ -0.68
SHMT2-219ENST00000555563 ZNF383Q8NA42 475 aa10.81□□□□□ -0.68
SHMT2-219ENST00000555563 OR4F17Q8NGA8 305 aa10.81□□□□□ -0.68
SHMT2-219ENST00000555563 SLC25A46Q96AG3 418 aa10.81□□□□□ -0.68
SHMT2-219ENST00000555563 R3HDM4Q96D70 268 aa10.81□□□□□ -0.68
SHMT2-219ENST00000555563 OR4F4Q96R69 305 aa10.81□□□□□ -0.68
SHMT2-219ENST00000555563 NAA50Q9GZZ1 169 aaKnown RBP10.81□□□□□ -0.68
SHMT2-219ENST00000555563 TSSC4Q9Y5U2 329 aaPredicted RBP10.81□□□□□ -0.68
SHMT2-219ENST00000555563 GABARAPO95166 117 aa10.8□□□□□ -0.68
SHMT2-219ENST00000555563 MC5RP33032 325 aa10.8□□□□□ -0.68
SHMT2-219ENST00000555563 SLC35B1P78383 322 aa10.8□□□□□ -0.68
SHMT2-219ENST00000555563 DEFA6Q01524 100 aa10.8□□□□□ -0.68
SHMT2-219ENST00000555563 C5orf64Q2M2E5 130 aa10.8□□□□□ -0.68
SHMT2-219ENST00000555563 UBE2NLQ5JXB2 153 aa10.8□□□□□ -0.68
SHMT2-219ENST00000555563 SAMD12Q8N8I0 201 aa10.8□□□□□ -0.68
SHMT2-219ENST00000555563 NPBQ8NG41 125 aa10.8□□□□□ -0.68
SHMT2-219ENST00000555563 MRPS26Q9BYN8 205 aaKnown RBP10.8□□□□□ -0.68
SHMT2-219ENST00000555563 AUNIPQ9H7T9 357 aa10.8□□□□□ -0.68
SHMT2-219ENST00000555563 DIABLOQ9NR28 239 aa10.8□□□□□ -0.68
SHMT2-219ENST00000555563 SDHAF2Q9NX18 166 aa10.8□□□□□ -0.68
SHMT2-219ENST00000555563 KIAA1456Q9P272 454 aa10.8□□□□□ -0.68
SHMT2-219ENST00000555563 ANXA10Q9UJ72 324 aa10.8□□□□□ -0.68
SHMT2-219ENST00000555563 RBBP9O75884 186 aa10.79□□□□□ -0.68
SHMT2-219ENST00000555563 HLA-DRB1P01911 266 aa10.79□□□□□ -0.68
SHMT2-219ENST00000555563 APOA2P02652 100 aa10.79□□□□□ -0.68
SHMT2-219ENST00000555563 IGKV1-16P04430 117 aa10.79□□□□□ -0.68
SHMT2-219ENST00000555563 PTHLHP12272 177 aa10.79□□□□□ -0.68
SHMT2-219ENST00000555563 NFYAP23511 347 aaPredicted RBP10.79□□□□□ -0.68
SHMT2-219ENST00000555563 ANKRD13BQ86YJ7 626 aa10.79□□□□□ -0.68
SHMT2-219ENST00000555563 KCTD12Q96CX2 325 aaKnown RBP10.79□□□□□ -0.68
SHMT2-219ENST00000555563 ZNF580Q9UK33 172 aa10.79□□□□□ -0.68
SHMT2-219ENST00000555563 GAB2Q9UQC2 676 aa10.79□□□□□ -0.68
SHMT2-219ENST00000555563 RBM7Q9Y580 266 aaKnown RBP10.79□□□□□ -0.68
SHMT2-219ENST00000555563 IGHV7-81A0A0B4J1V7 117 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 RRHO14718 337 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 ATP6V0E1O15342 81 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 XRCC3O43542 346 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 CTXN2P0C2S0 81 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 PF4V1P10720 104 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 VDAC1P21796 283 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 NDPQ00604 133 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 CFHR3Q02985 330 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 CTF1Q16619 201 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 LIN54Q6MZP7 749 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 CNIH2Q6PI25 160 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 PDPNQ86YL7 162 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 COMMD1Q8N668 190 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 GVQW1Q8N7I0 195 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 BEST4Q8NFU0 473 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 FBXL15Q9H469 300 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 PARP11Q9NR21 331 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 SLC35D1Q9NTN3 355 aa10.78□□□□□ -0.68
SHMT2-219ENST00000555563 J3QRK9 145 aa10.77□□□□□ -0.69
SHMT2-219ENST00000555563 IGF1P05019 195 aa10.77□□□□□ -0.69
SHMT2-219ENST00000555563 EIF4EP06730 217 aaKnown RBP10.77□□□□□ -0.69
SHMT2-219ENST00000555563 FCER2P06734 321 aa10.77□□□□□ -0.69
SHMT2-219ENST00000555563 ALDH3B2P48448 385 aa10.77□□□□□ -0.69
SHMT2-219ENST00000555563 TAS2R20P59543 309 aa10.77□□□□□ -0.69
SHMT2-219ENST00000555563 RPL23AP62750 156 aaKnown RBP10.77□□□□□ -0.69
SHMT2-219ENST00000555563 PLGLAQ15195 96 aa10.77□□□□□ -0.69
SHMT2-219ENST00000555563 TMEM69Q5SWH9 247 aa10.77□□□□□ -0.69
SHMT2-219ENST00000555563 GPR107Q5VW38 600 aa10.77□□□□□ -0.69
SHMT2-219ENST00000555563 C18orf65Q6ZTR6 163 aa10.77□□□□□ -0.69
SHMT2-219ENST00000555563 HOGA1Q86XE5 327 aa10.77□□□□□ -0.69
SHMT2-219ENST00000555563 C1QL4Q86Z23 238 aa10.77□□□□□ -0.69
SHMT2-219ENST00000555563 S100A16Q96FQ6 103 aaKnown RBP10.77□□□□□ -0.69
SHMT2-219ENST00000555563 GON7Q9BXV9 100 aa10.77□□□□□ -0.69
SHMT2-219ENST00000555563 OR51J1Q9H342 316 aa10.77□□□□□ -0.69
SHMT2-219ENST00000555563 OR2W1Q9Y3N9 320 aa10.77□□□□□ -0.69
SHMT2-219ENST00000555563 PKD1L1Q8TDX9 2849 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms