RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 TSSC4Q9Y5U2 329 aaPredicted RBP14.85□□□□□ -0.03
CLN3-227ENST00000567495 TCRBV4S1A1TA0A5B7 111 aa14.84□□□□□ -0.03
CLN3-227ENST00000567495 SH2D7A6NKC9 451 aaPredicted RBP14.84□□□□□ -0.03
CLN3-227ENST00000567495 IFITM5A6NNB3 132 aa14.84□□□□□ -0.03
CLN3-227ENST00000567495 NCBP2LA6PVI3 153 aaKnown RBP14.84□□□□□ -0.03
CLN3-227ENST00000567495 FOXI3A8MTJ6 420 aaPredicted RBP14.84□□□□□ -0.03
CLN3-227ENST00000567495 ADARB2-AS1A8MUL3 147 aa14.84□□□□□ -0.03
CLN3-227ENST00000567495 LDLRAD4O15165 306 aa14.84□□□□□ -0.03
CLN3-227ENST00000567495 CLDN12P56749 244 aa14.84□□□□□ -0.03
CLN3-227ENST00000567495 GNMTQ14749 295 aa14.84□□□□□ -0.03
CLN3-227ENST00000567495 FOXRED2Q8IWF2 684 aa14.84□□□□□ -0.03
CLN3-227ENST00000567495 IL1F10Q8WWZ1 152 aa14.84□□□□□ -0.03
CLN3-227ENST00000567495 GHITMQ9H3K2 345 aa14.84□□□□□ -0.03
CLN3-227ENST00000567495 LIN7CQ9NUP9 197 aaKnown RBP14.84□□□□□ -0.03
CLN3-227ENST00000567495 PSMB11A5LHX3 300 aa14.83□□□□□ -0.04
CLN3-227ENST00000567495 IGHG2P01859 326 aa14.83□□□□□ -0.04
CLN3-227ENST00000567495 RAB3BP20337 219 aa14.83□□□□□ -0.04
CLN3-227ENST00000567495 PSMB9P28065 219 aa14.83□□□□□ -0.04
CLN3-227ENST00000567495 FGF9P31371 208 aaPredicted RBP14.83□□□□□ -0.04
CLN3-227ENST00000567495 VEGFCP49767 419 aa14.83□□□□□ -0.04
CLN3-227ENST00000567495 TMEM50BP56557 158 aa14.83□□□□□ -0.04
CLN3-227ENST00000567495 HES5Q5TA89 166 aa14.83□□□□□ -0.04
CLN3-227ENST00000567495 SLC35E3Q7Z769 313 aa14.83□□□□□ -0.04
CLN3-227ENST00000567495 COMMD1Q8N668 190 aa14.83□□□□□ -0.04
CLN3-227ENST00000567495 SETD6Q8TBK2 473 aa14.83□□□□□ -0.04
CLN3-227ENST00000567495 ARHGAP5-AS1Q96IT6 56 aa14.83□□□□□ -0.04
CLN3-227ENST00000567495 AK3Q9UIJ7 227 aa14.83□□□□□ -0.04
CLN3-227ENST00000567495 TMEM272A0A1B0GTI8 110 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 SERPINE3A8MV23 424 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 ITGB1BP1O14713 200 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 KCNAB3O43448 404 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 WIPF1O43516 503 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 RAB6AP20340 208 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 SLC35B1P78383 322 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 MRPS15P82914 257 aaKnown RBP14.82□□□□□ -0.04
CLN3-227ENST00000567495 LSAMPQ13449 338 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 TCTEX1D4Q5JR98 221 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 HIST2H2BDQ6DRA6 164 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 FAM71F2Q6NXP2 309 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 ZNF773Q6PK81 442 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 CYYR1Q96J86 154 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 CMSS1Q9BQ75 279 aaKnown RBP14.82□□□□□ -0.04
CLN3-227ENST00000567495 GON7Q9BXV9 100 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 PECRQ9BY49 303 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 ABCG5Q9H222 651 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 PIPOXQ9P0Z9 390 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 SLC23A1Q9UHI7 598 aa14.82□□□□□ -0.04
CLN3-227ENST00000567495 NOTCH3Q9UM47 2321 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 AP4M1O00189 453 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 RAB29O14966 203 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 ZBTB25P24278 435 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 GADD45AP24522 165 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 OR10A3P58181 314 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 C22orf42Q6IC83 251 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 ZNF833PQ6ZTB9 187 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 Q8N9W7 124 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 EDARADDQ8WWZ3 215 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 PTX4Q96A99 478 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 RAB3CQ96E17 227 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 S1PR3Q99500 378 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 RASL11BQ9BPW5 248 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 Q9N2K0 584 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 PLSCR3Q9NRY6 295 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 STUB1Q9UNE7 303 aa14.81□□□□□ -0.04
CLN3-227ENST00000567495 METTL21EPA6NDL7 271 aa14.8□□□□□ -0.04
CLN3-227ENST00000567495 ZNF736B4DX44 427 aaPredicted RBP14.8□□□□□ -0.04
CLN3-227ENST00000567495 HSPA12AO43301 675 aa14.8□□□□□ -0.04
CLN3-227ENST00000567495 PF4V1P10720 104 aa14.8□□□□□ -0.04
CLN3-227ENST00000567495 GPR12P47775 334 aa14.8□□□□□ -0.04
CLN3-227ENST00000567495 HLA-DRB3P79483 266 aa14.8□□□□□ -0.04
CLN3-227ENST00000567495 PDLIM3Q53GG5 364 aaPredicted RBP14.8□□□□□ -0.04
CLN3-227ENST00000567495 PLAC9Q5JTB6 97 aa14.8□□□□□ -0.04
CLN3-227ENST00000567495 Q6ZPA2 131 aa14.8□□□□□ -0.04
CLN3-227ENST00000567495 TPRA1Q86W33 373 aa14.8□□□□□ -0.04
CLN3-227ENST00000567495 ODF3L1Q8IXM7 274 aa14.8□□□□□ -0.04
CLN3-227ENST00000567495 IFI27L2Q9H2X8 130 aa14.8□□□□□ -0.04
CLN3-227ENST00000567495 SSR3Q9UNL2 185 aa14.8□□□□□ -0.04
CLN3-227ENST00000567495 A0A1W2PRX2 142 aa14.79□□□□□ -0.04
CLN3-227ENST00000567495 SHISA3A0PJX4 238 aa14.79□□□□□ -0.04
CLN3-227ENST00000567495 RRP9O43818 475 aaKnown RBP14.79□□□□□ -0.04
CLN3-227ENST00000567495 CD3GP09693 182 aa14.79□□□□□ -0.04
CLN3-227ENST00000567495 SLC6A1P30531 599 aa14.79□□□□□ -0.04
CLN3-227ENST00000567495 ARL6IP1Q15041 203 aa14.79□□□□□ -0.04
CLN3-227ENST00000567495 C5orf24Q7Z6I8 188 aa14.79□□□□□ -0.04
CLN3-227ENST00000567495 NABP2Q9BQ15 211 aa14.79□□□□□ -0.04
CLN3-227ENST00000567495 HDHD3Q9BSH5 251 aaPredicted RBP14.79□□□□□ -0.04
CLN3-227ENST00000567495 CENPOQ9BU64 300 aa14.79□□□□□ -0.04
CLN3-227ENST00000567495 ZFP57Q9NU63 452 aa14.79□□□□□ -0.04
CLN3-227ENST00000567495 SAA2-SAA4A0A096LPE2 208 aa14.78□□□□□ -0.04
CLN3-227ENST00000567495 NOTOA8MTQ0 251 aa14.78□□□□□ -0.04
CLN3-227ENST00000567495 TRDCB7Z8K6 153 aa14.78□□□□□ -0.04
CLN3-227ENST00000567495 SAA2P0DJI9 122 aaPredicted RBP14.78□□□□□ -0.04
CLN3-227ENST00000567495 SOX6P35712 828 aa14.78□□□□□ -0.04
CLN3-227ENST00000567495 CEACAM6P40199 344 aa14.78□□□□□ -0.04
CLN3-227ENST00000567495 SERPINB10P48595 397 aa14.78□□□□□ -0.04
CLN3-227ENST00000567495 KCTD21Q4G0X4 260 aa14.78□□□□□ -0.04
CLN3-227ENST00000567495 KHDC1LQ5JSQ8 128 aa14.78□□□□□ -0.04
CLN3-227ENST00000567495 ZNF329Q86UD4 541 aa14.78□□□□□ -0.04
CLN3-227ENST00000567495 STPG2Q8N412 459 aa14.78□□□□□ -0.04
CLN3-227ENST00000567495 FAM71E2Q8N5Q1 922 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms