RNA–Protein interactions for RNA: YIL003W

CFD1, Transcript of Highly conserved iron-sulfur cluster binding protein, yeast

Gene CFD1, Length 882 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CFD1	YIL003W	PNS1	Q12412	539 aa		4.25	□□□□□ -1.73
CFD1	YIL003W	FBP1	P09201	348 aa		4.24	□□□□□ -1.73
CFD1	YIL003W	SWI6	P09959	803 aa		4.24	□□□□□ -1.73
CFD1	YIL003W	RPA135	P22138	1203 aa	Known RBP	4.24	□□□□□ -1.73
CFD1	YIL003W	MAL31	P38156	614 aa		4.24	□□□□□ -1.73
CFD1	YIL003W	EXO84	P38261	753 aa		4.24	□□□□□ -1.73
CFD1	YIL003W	ZRG8	P40021	1076 aa		4.24	□□□□□ -1.73
CFD1	YIL003W	YJR039W	P47107	1121 aa		4.24	□□□□□ -1.73
CFD1	YIL003W	RNR4	P49723	345 aa	Known RBP	4.24	□□□□□ -1.73
CFD1	YIL003W	TAN1	P53072	289 aa	Predicted RBP	4.24	□□□□□ -1.73
CFD1	YIL003W	BRE5	P53741	515 aa	Known RBP	4.24	□□□□□ -1.73
CFD1	YIL003W	RSM24	Q03976	319 aa		4.24	□□□□□ -1.73
CFD1	YIL003W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.24	□□□□□ -1.73	not detected
CFD1	YIL003W	MSS18	P08593	268 aa		4.23	□□□□□ -1.73
CFD1	YIL003W	DBF20	P32328	564 aa		4.23	□□□□□ -1.73
CFD1	YIL003W	SSZ1	P38788	538 aa	Known RBP	4.23	□□□□□ -1.73
CFD1	YIL003W	QRI7	P43122	407 aa		4.23	□□□□□ -1.73
CFD1	YIL003W	SSY5	P47002	699 aa		4.23	□□□□□ -1.73
CFD1	YIL003W	BFA1	P47113	574 aa		4.23	□□□□□ -1.73
CFD1	YIL003W	PAP2	P53632	584 aa	Known RBP	4.23	□□□□□ -1.73
CFD1	YIL003W	CNM67	P53865	581 aa	Known RBP	4.23	□□□□□ -1.73
CFD1	YIL003W	CEG1	Q01159	459 aa	Predicted RBP	4.23	□□□□□ -1.73
CFD1	YIL003W	LEE1	Q02799	301 aa	Known RBP	4.23	□□□□□ -1.73
CFD1	YIL003W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.23	□□□□□ -1.73	not detected
CFD1	YIL003W	BCK1	Q01389	1478 aa		4.23	□□□□□ -1.73
CFD1	YIL003W	CMP2	P14747	604 aa		4.22	□□□□□ -1.73
CFD1	YIL003W	LAM1	P38851	1228 aa		4.22	□□□□□ -1.73
CFD1	YIL003W	BEM4	P39011	633 aa		4.22	□□□□□ -1.73
CFD1	YIL003W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
CFD1	YIL003W	MEF2	P39677	819 aa		4.22	□□□□□ -1.73
CFD1	YIL003W	ACA1	P39970	489 aa		4.22	□□□□□ -1.73
CFD1	YIL003W	VID27	P40157	782 aa		4.22	□□□□□ -1.73
CFD1	YIL003W	ASM4	Q05166	528 aa		4.22	□□□□□ -1.73
CFD1	YIL003W	SGD1	Q06132	899 aa		4.22	□□□□□ -1.73
CFD1	YIL003W	YOR352W	Q08816	343 aa		4.22	□□□□□ -1.73
CFD1	YIL003W	YOL114C	Q12322	202 aa		4.22	□□□□□ -1.73
CFD1	YIL003W	SPE1	P08432	466 aa		4.21	□□□□□ -1.74
CFD1	YIL003W	GLN4	P13188	809 aa	Known RBP	4.21	□□□□□ -1.74
CFD1	YIL003W	MIP6	P38760	659 aa	Known RBP	4.21	□□□□□ -1.74
CFD1	YIL003W	CTF8	P38877	133 aa		4.21	□□□□□ -1.74
CFD1	YIL003W	ERP2	P39704	215 aa		4.21	□□□□□ -1.74
CFD1	YIL003W	VID28	P40547	921 aa		4.21	□□□□□ -1.74
CFD1	YIL003W	MND2	P40577	368 aa		4.21	□□□□□ -1.74
CFD1	YIL003W	PSP2	P50109	593 aa	Known RBP	4.21	□□□□□ -1.74
CFD1	YIL003W	SPT20	P50875	604 aa		4.21	□□□□□ -1.74
CFD1	YIL003W	GPD1	Q00055	391 aa	Known RBP	4.21	□□□□□ -1.74
CFD1	YIL003W	GCN5	Q03330	439 aa		4.21	□□□□□ -1.74
CFD1	YIL003W	OMS1	Q06668	471 aa		4.21	□□□□□ -1.74
CFD1	YIL003W	WHI4	Q07655	649 aa	Known RBP	4.21	□□□□□ -1.74
CFD1	YIL003W	PSR2	Q07949	397 aa		4.21	□□□□□ -1.74
CFD1	YIL003W	GPR1	Q12361	961 aa		4.21	□□□□□ -1.74
CFD1	YIL003W	GCN2	P15442	1659 aa		4.21	□□□□□ -1.74
CFD1	YIL003W	GAL10	P04397	699 aa		4.2	□□□□□ -1.74
CFD1	YIL003W	CDC26	P14724	124 aa		4.2	□□□□□ -1.74
CFD1	YIL003W	PHO81	P17442	1178 aa		4.2	□□□□□ -1.74
CFD1	YIL003W	YKR075C	P36155	307 aa		4.2	□□□□□ -1.74
CFD1	YIL003W	AKL1	P38080	1108 aa	Known RBP	4.2	□□□□□ -1.74
CFD1	YIL003W	YHR078W	P38799	552 aa		4.2	□□□□□ -1.74
CFD1	YIL003W	YHR202W	P38887	602 aa		4.2	□□□□□ -1.74
CFD1	YIL003W	EAF5	P39995	279 aa		4.2	□□□□□ -1.74
CFD1	YIL003W	SDP1	P40479	209 aa		4.2	□□□□□ -1.74
CFD1	YIL003W	YIL092W	P40497	633 aa		4.2	□□□□□ -1.74
CFD1	YIL003W	SAP185	P40856	1058 aa		4.2	□□□□□ -1.74
CFD1	YIL003W	HOL1	P53389	586 aa		4.2	□□□□□ -1.74
CFD1	YIL003W	NOP15	P53927	220 aa	Predicted RBP	4.2	□□□□□ -1.74
CFD1	YIL003W	YML131W	Q03102	365 aa		4.2	□□□□□ -1.74
CFD1	YIL003W	YLR407W	Q06070	228 aa		4.2	□□□□□ -1.74
CFD1	YIL003W	COG4	Q06096	861 aa		4.2	□□□□□ -1.74
CFD1	YIL003W	BRE1	Q07457	700 aa	Known RBP	4.2	□□□□□ -1.74
CFD1	YIL003W	NGL1	Q08213	363 aa	Known RBP	4.2	□□□□□ -1.74
CFD1	YIL003W	CWC2	Q12046	339 aa	Predicted RBP	4.2	□□□□□ -1.74
CFD1	YIL003W	NUR1	Q12066	484 aa		4.2	□□□□□ -1.74
CFD1	YIL003W	IKI3	Q06706	1349 aa	Known RBP	4.2	□□□□□ -1.74
CFD1	YIL003W	CYC1	P00044	109 aa	Predicted RBP	4.19	□□□□□ -1.74
CFD1	YIL003W	SEC18	P18759	758 aa	Known RBP	4.19	□□□□□ -1.74
CFD1	YIL003W	HOP1	P20050	605 aa		4.19	□□□□□ -1.74
CFD1	YIL003W	SSH4	P32343	579 aa		4.19	□□□□□ -1.74
CFD1	YIL003W	HXT4	P32467	576 aa		4.19	□□□□□ -1.74
CFD1	YIL003W	SAK1	P38990	1142 aa		4.19	□□□□□ -1.74
CFD1	YIL003W	RPT2	P40327	437 aa	Known RBP	4.19	□□□□□ -1.74
CFD1	YIL003W	ERR3	P42222	437 aa		4.19	□□□□□ -1.74
CFD1	YIL003W	MTR3	P48240	250 aa	Predicted RBP	4.19	□□□□□ -1.74
CFD1	YIL003W	ASK10	P48361	1146 aa		4.19	□□□□□ -1.74
CFD1	YIL003W	MOT3	P54785	490 aa	Known RBP	4.19	□□□□□ -1.74
CFD1	YIL003W	HIM1	Q06674	414 aa		4.19	□□□□□ -1.74
CFD1	YIL003W	RPS17A	P02407	136 aa	Known RBP	4.18	□□□□□ -1.74
CFD1	YIL003W	RPS17B	P14127	136 aa	Known RBP	4.18	□□□□□ -1.74
CFD1	YIL003W	IMG2	P25642	146 aa	Predicted RBP	4.18	□□□□□ -1.74
CFD1	YIL003W	IRC5	P43610	853 aa		4.18	□□□□□ -1.74
CFD1	YIL003W	SET2	P46995	733 aa	Known RBP	4.18	□□□□□ -1.74
CFD1	YIL003W	TEP1	P53916	434 aa		4.18	□□□□□ -1.74
CFD1	YIL003W	ORC4	P54791	529 aa		4.18	□□□□□ -1.74
CFD1	YIL003W	YMR210W	Q03649	449 aa		4.18	□□□□□ -1.74
CFD1	YIL003W	MUS81	Q04149	632 aa	Predicted RBP	4.18	□□□□□ -1.74
CFD1	YIL003W	HLR1	Q04429	423 aa		4.18	□□□□□ -1.74
CFD1	YIL003W	CIA1	Q05583	330 aa		4.18	□□□□□ -1.74
CFD1	YIL003W	YPS7	Q06325	596 aa		4.18	□□□□□ -1.74
CFD1	YIL003W	TPO1	Q07824	586 aa		4.18	□□□□□ -1.74
CFD1	YIL003W	PUS9	Q12069	462 aa		4.18	□□□□□ -1.74
CFD1	YIL003W	PDR11	P40550	1411 aa		4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 35.8 ms