RNA–Protein interactions for RNA: YFR002W

NIC96, Transcript of Linker nucleoporin component of the nuclear pore complex (NPC), yeast

Gene NIC96, Length 2,520 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIC96	YFR002W	BEM4	P39011	633 aa		3.2	□□□□□ -1.9
NIC96	YFR002W	CTR1	P49573	406 aa		3.2	□□□□□ -1.9
NIC96	YFR002W	LGE1	Q02796	332 aa	Known RBP	3.2	□□□□□ -1.9
NIC96	YFR002W	VPS36	Q06696	566 aa		3.2	□□□□□ -1.9
NIC96	YFR002W	ISA1	Q07821	250 aa	Predicted RBP	3.2	□□□□□ -1.9
NIC96	YFR002W	MNN1	P39106	762 aa		3.19	□□□□□ -1.9
NIC96	YFR002W	YIL166C	P40445	542 aa		3.19	□□□□□ -1.9
NIC96	YFR002W	CLF1	Q12309	687 aa	Predicted RBP	3.19	□□□□□ -1.9
NIC96	YFR002W	ADY2	P25613	283 aa		3.19	□□□□□ -1.9
NIC96	YFR002W	RIX1	P38883	763 aa	Predicted RBP	3.19	□□□□□ -1.9
NIC96	YFR002W	IMG2	P25642	146 aa	Predicted RBP	3.18	□□□□□ -1.9
NIC96	YFR002W	DIA2	Q08496	732 aa	Predicted RBP	3.18	□□□□□ -1.9
NIC96	YFR002W	CHS5	Q12114	671 aa	Known RBP	3.18	□□□□□ -1.9
NIC96	YFR002W	NDJ1	Q12366	352 aa		3.18	□□□□□ -1.9
NIC96	YFR002W	CHD1	P32657	1468 aa		3.18	□□□□□ -1.9
NIC96	YFR002W	PRP28	P23394	588 aa		3.18	□□□□□ -1.9
NIC96	YFR002W	FEN2	P25621	512 aa	Known RBP	3.18	□□□□□ -1.9
NIC96	YFR002W	PEX2	P32800	271 aa		3.18	□□□□□ -1.9
NIC96	YFR002W	SDA1	P53313	767 aa	Known RBP	3.18	□□□□□ -1.9
NIC96	YFR002W	DNM1	P54861	757 aa		3.18	□□□□□ -1.9
NIC96	YFR002W	GPD1	Q00055	391 aa	Known RBP	3.18	□□□□□ -1.9
NIC96	YFR002W	RCR2	Q03446	210 aa	Known RBP	3.18	□□□□□ -1.9
NIC96	YFR002W	ARO10	Q06408	635 aa		3.18	□□□□□ -1.9
NIC96	YFR002W	TUB1	P09733	447 aa	Known RBP	3.17	□□□□□ -1.9
NIC96	YFR002W	FUB1	P25659	250 aa		3.17	□□□□□ -1.9
NIC96	YFR002W	RFX1	P48743	811 aa		3.17	□□□□□ -1.9
NIC96	YFR002W	FRS1	P15624	595 aa	Known RBP	3.17	□□□□□ -1.9
NIC96	YFR002W	MSS1	P32559	526 aa	Predicted RBP	3.17	□□□□□ -1.9
NIC96	YFR002W	MAL31	P38156	614 aa		3.17	□□□□□ -1.9
NIC96	YFR002W	NMD2	P38798	1089 aa	Known RBP	3.17	□□□□□ -1.9
NIC96	YFR002W	PIG2	P40187	538 aa		3.17	□□□□□ -1.9
NIC96	YFR002W	BIT61	P47041	543 aa		3.17	□□□□□ -1.9
NIC96	YFR002W	MPS3	P47069	682 aa		3.17	□□□□□ -1.9
NIC96	YFR002W	YGR151C	P53287	111 aa		3.17	□□□□□ -1.9
NIC96	YFR002W	VHS3	Q08438	674 aa		3.17	□□□□□ -1.9
NIC96	YFR002W	POM34	Q12445	299 aa		3.17	□□□□□ -1.9
NIC96	YFR002W	AIM44	Q99299	758 aa		3.17	□□□□□ -1.9
NIC96	YFR002W	SFP1	P32432	683 aa		3.16	□□□□□ -1.9
NIC96	YFR002W	PET127	P32606	800 aa		3.16	□□□□□ -1.9
NIC96	YFR002W	YKU70	P32807	602 aa		3.16	□□□□□ -1.9
NIC96	YFR002W	YHR097C	P38809	366 aa	Known RBP	3.16	□□□□□ -1.9
NIC96	YFR002W	YEL020C	P39994	560 aa		3.16	□□□□□ -1.9
NIC96	YFR002W	YIL077C	P40508	320 aa		3.16	□□□□□ -1.9
NIC96	YFR002W	RET2	P43621	546 aa		3.16	□□□□□ -1.9
NIC96	YFR002W	YJR096W	P47137	282 aa		3.16	□□□□□ -1.9
NIC96	YFR002W	YLR407W	Q06070	228 aa		3.16	□□□□□ -1.9
NIC96	YFR002W	ADR1	P07248	1323 aa		3.16	□□□□□ -1.9
NIC96	YFR002W	XRN1	P22147	1528 aa	Known RBP	3.16	□□□□□ -1.9
NIC96	YFR002W	ERG20	P08524	352 aa	Known RBP	3.16	□□□□□ -1.9
NIC96	YFR002W	IME1	P21190	360 aa		3.16	□□□□□ -1.9
NIC96	YFR002W	YPK9	Q12697	1472 aa		3.16	□□□□□ -1.9
NIC96	YFR002W	PDR15	Q04182	1529 aa	Known RBP	3.15	□□□□□ -1.9
NIC96	YFR002W	PAN1	P32521	1480 aa		3.15	□□□□□ -1.9
NIC96	YFR002W	ILV6	P25605	309 aa	Known RBP	3.15	□□□□□ -1.91
NIC96	YFR002W	GMH1	P36125	273 aa		3.15	□□□□□ -1.91
NIC96	YFR002W	KSP1	P38691	1029 aa	Known RBP	3.15	□□□□□ -1.91
NIC96	YFR002W	CKB2	P38930	258 aa		3.15	□□□□□ -1.91
NIC96	YFR002W	KHA1	P40309	873 aa		3.15	□□□□□ -1.91
NIC96	YFR002W	IMO32	P53219	342 aa		3.15	□□□□□ -1.91
NIC96	YFR002W	APM1	Q00776	475 aa	Predicted RBP	3.15	□□□□□ -1.91
NIC96	YFR002W	YPS7	Q06325	596 aa		3.15	□□□□□ -1.91
NIC96	YFR002W	YFT2	Q06676	274 aa		3.15	□□□□□ -1.91
NIC96	YFR002W	YDL086W	Q07505	273 aa		3.15	□□□□□ -1.91
NIC96	YFR002W	SWI6	P09959	803 aa		3.15	□□□□□ -1.91
NIC96	YFR002W	CTP1	P38152	299 aa		3.15	□□□□□ -1.91
NIC96	YFR002W	COS111	P38308	924 aa		3.15	□□□□□ -1.91
NIC96	YFR002W	IOC4	Q04213	475 aa		3.15	□□□□□ -1.91
NIC96	YFR002W	SPO11	P23179	398 aa		3.14	□□□□□ -1.91
NIC96	YFR002W	YKR075C	P36155	307 aa		3.14	□□□□□ -1.91
NIC96	YFR002W	TDA3	P38758	523 aa		3.14	□□□□□ -1.91
NIC96	YFR002W	MIT1	P40002	666 aa		3.14	□□□□□ -1.91
NIC96	YFR002W	YMR210W	Q03649	449 aa		3.14	□□□□□ -1.91
NIC96	YFR002W	TRM3	Q07527	1436 aa		3.14	□□□□□ -1.91
NIC96	YFR002W	RPN13	O13563	156 aa		3.14	□□□□□ -1.91
NIC96	YFR002W	ABF1	P14164	731 aa		3.14	□□□□□ -1.91
NIC96	YFR002W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	3.14	□□□□□ -1.91	not detected
NIC96	YFR002W	MUP3	P38734	546 aa		3.14	□□□□□ -1.91
NIC96	YFR002W	THI73	Q07904	523 aa		3.14	□□□□□ -1.91
NIC96	YFR002W	BMS1	Q08965	1183 aa	Known RBP	3.14	□□□□□ -1.91
NIC96	YFR002W	VPS15	P22219	1454 aa		3.13	□□□□□ -1.91
NIC96	YFR002W	KIN82	P25341	720 aa		3.13	□□□□□ -1.91
NIC96	YFR002W	PRP19	P32523	503 aa	Known RBP	3.13	□□□□□ -1.91
NIC96	YFR002W	YMC2	P38087	329 aa		3.13	□□□□□ -1.91
NIC96	YFR002W	HXT6	P39003	570 aa	Known RBP	3.13	□□□□□ -1.91
NIC96	YFR002W	HXT7	P39004	570 aa		3.13	□□□□□ -1.91
NIC96	YFR002W	CCT5	P40413	562 aa	Known RBP	3.13	□□□□□ -1.91
NIC96	YFR002W	BUD8	P41698	603 aa		3.13	□□□□□ -1.91
NIC96	YFR002W	NMA2	P53204	395 aa		3.13	□□□□□ -1.91
NIC96	YFR002W	SNF12	P53628	566 aa		3.13	□□□□□ -1.91
NIC96	YFR002W	UTP14	Q04500	899 aa	Known RBP	3.13	□□□□□ -1.91
NIC96	YFR002W	COQ11	Q05892	277 aa		3.13	□□□□□ -1.91
NIC96	YFR002W	STP4	Q07351	490 aa		3.13	□□□□□ -1.91
NIC96	YFR002W	RPS21B	Q3E754	87 aa	Known RBP	3.13	□□□□□ -1.91
NIC96	YFR002W	TYS1	P36421	394 aa	Known RBP	3.13	□□□□□ -1.91
NIC96	YFR002W	PAC2	P39937	518 aa		3.13	□□□□□ -1.91
NIC96	YFR002W	YJR142W	P47173	342 aa		3.13	□□□□□ -1.91
NIC96	YFR002W	HLJ1	P48353	224 aa		3.13	□□□□□ -1.91
NIC96	YFR002W	MTQ2	Q03920	221 aa	Predicted RBP	3.13	□□□□□ -1.91
NIC96	YFR002W	VBA4	Q04602	768 aa	Known RBP	3.13	□□□□□ -1.91
NIC96	YFR002W	YSH1	Q06224	779 aa	Predicted RBP	3.13	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 29 ms