RNA–Protein interactions for RNA: YDR494W

RSM28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene RSM28, Length 1,086 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSM28	YDR494W	SSZ1	P38788	538 aa	Known RBP	4.26	□□□□□ -1.73
RSM28	YDR494W	MIT1	P40002	666 aa		4.26	□□□□□ -1.73
RSM28	YDR494W	MPS3	P47069	682 aa		4.26	□□□□□ -1.73
RSM28	YDR494W	GLO1	P50107	326 aa		4.26	□□□□□ -1.73
RSM28	YDR494W	DNM1	P54861	757 aa		4.26	□□□□□ -1.73
RSM28	YDR494W	SEG1	Q04279	960 aa		4.26	□□□□□ -1.73
RSM28	YDR494W	COG8	Q04632	607 aa		4.26	□□□□□ -1.73
RSM28	YDR494W	ATG33	Q06485	197 aa		4.26	□□□□□ -1.73
RSM28	YDR494W	BMS1	Q08965	1183 aa	Known RBP	4.26	□□□□□ -1.73
RSM28	YDR494W	PHO5	P00635	467 aa		4.25	□□□□□ -1.73
RSM28	YDR494W	HMG1	P12683	1054 aa		4.25	□□□□□ -1.73
RSM28	YDR494W	SFL1	P20134	766 aa		4.25	□□□□□ -1.73
RSM28	YDR494W	FEN2	P25621	512 aa	Known RBP	4.25	□□□□□ -1.73
RSM28	YDR494W	HLJ1	P48353	224 aa		4.25	□□□□□ -1.73
RSM28	YDR494W	AIM14	P53109	570 aa		4.25	□□□□□ -1.73
RSM28	YDR494W	YLR001C	Q07895	862 aa		4.25	□□□□□ -1.73
RSM28	YDR494W	STE12	P13574	688 aa		4.24	□□□□□ -1.73
RSM28	YDR494W	SAT4	P25333	603 aa	Known RBP	4.24	□□□□□ -1.73
RSM28	YDR494W	AKL1	P38080	1108 aa	Known RBP	4.24	□□□□□ -1.73
RSM28	YDR494W	CTP1	P38152	299 aa		4.24	□□□□□ -1.73
RSM28	YDR494W	KHA1	P40309	873 aa		4.24	□□□□□ -1.73
RSM28	YDR494W	YJR039W	P47107	1121 aa		4.24	□□□□□ -1.73
RSM28	YDR494W	YJR142W	P47173	342 aa		4.24	□□□□□ -1.73
RSM28	YDR494W	RFX1	P48743	811 aa		4.24	□□□□□ -1.73
RSM28	YDR494W	SDA1	P53313	767 aa	Known RBP	4.24	□□□□□ -1.73
RSM28	YDR494W	DOS2	P54858	310 aa		4.24	□□□□□ -1.73
RSM28	YDR494W	ISA1	Q07821	250 aa	Predicted RBP	4.24	□□□□□ -1.73
RSM28	YDR494W	GIN4	Q12263	1142 aa		4.24	□□□□□ -1.73
RSM28	YDR494W	LAM4	P38800	1345 aa		4.23	□□□□□ -1.73
RSM28	YDR494W	PCM1	P38628	557 aa	Known RBP	4.23	□□□□□ -1.73
RSM28	YDR494W	PMC1	P38929	1173 aa	Predicted RBP	4.23	□□□□□ -1.73
RSM28	YDR494W	MET13	P53128	600 aa		4.23	□□□□□ -1.73
RSM28	YDR494W	NMA2	P53204	395 aa		4.23	□□□□□ -1.73
RSM28	YDR494W	SEC5	P89102	971 aa		4.23	□□□□□ -1.73
RSM28	YDR494W	FMP30	Q02883	468 aa		4.23	□□□□□ -1.73
RSM28	YDR494W	VPS36	Q06696	566 aa		4.23	□□□□□ -1.73
RSM28	YDR494W	POM34	Q12445	299 aa		4.23	□□□□□ -1.73
RSM28	YDR494W	ERG11	P10614	530 aa		4.22	□□□□□ -1.73
RSM28	YDR494W	MSS1	P32559	526 aa	Predicted RBP	4.22	□□□□□ -1.73
RSM28	YDR494W	UGP1	P32861	499 aa	Known RBP	4.22	□□□□□ -1.73
RSM28	YDR494W	YPT7	P32939	208 aa		4.22	□□□□□ -1.73
RSM28	YDR494W	YIL077C	P40508	320 aa		4.22	□□□□□ -1.73
RSM28	YDR494W	BNA3	P47039	444 aa	Known RBP	4.22	□□□□□ -1.73
RSM28	YDR494W	ASN1	P49089	572 aa	Known RBP	4.22	□□□□□ -1.73
RSM28	YDR494W	YSH1	Q06224	779 aa	Predicted RBP	4.22	□□□□□ -1.73
RSM28	YDR494W	GUD1	Q07729	489 aa		4.22	□□□□□ -1.73
RSM28	YDR494W	DCS2	Q12123	353 aa		4.22	□□□□□ -1.73
RSM28	YDR494W	RKI1	Q12189	258 aa		4.22	□□□□□ -1.73
RSM28	YDR494W	ADE5,7	P07244	802 aa	Known RBP	4.21	□□□□□ -1.74
RSM28	YDR494W	YMC1	P32331	307 aa		4.21	□□□□□ -1.74
RSM28	YDR494W	APL3	P38065	1025 aa		4.21	□□□□□ -1.74
RSM28	YDR494W	YHR202W	P38887	602 aa		4.21	□□□□□ -1.74
RSM28	YDR494W	GPD1	Q00055	391 aa	Known RBP	4.21	□□□□□ -1.74
RSM28	YDR494W	YFT2	Q06676	274 aa		4.21	□□□□□ -1.74
RSM28	YDR494W	PGK1	P00560	416 aa	Known RBP	4.2	□□□□□ -1.74
RSM28	YDR494W	ERG20	P08524	352 aa	Known RBP	4.2	□□□□□ -1.74
RSM28	YDR494W	COS111	P38308	924 aa		4.2	□□□□□ -1.74
RSM28	YDR494W	NUG1	P40010	520 aa	Known RBP	4.2	□□□□□ -1.74
RSM28	YDR494W	MGS1	P40151	587 aa		4.2	□□□□□ -1.74
RSM28	YDR494W	PMT6	P42934	759 aa		4.2	□□□□□ -1.74
RSM28	YDR494W	BIT61	P47041	543 aa		4.2	□□□□□ -1.74
RSM28	YDR494W	THI73	Q07904	523 aa		4.2	□□□□□ -1.74
RSM28	YDR494W	VHS3	Q08438	674 aa		4.2	□□□□□ -1.74
RSM28	YDR494W	PTP1	P25044	335 aa		4.19	□□□□□ -1.74
RSM28	YDR494W	NTH1	P32356	751 aa		4.19	□□□□□ -1.74
RSM28	YDR494W	BEM4	P39011	633 aa		4.19	□□□□□ -1.74
RSM28	YDR494W	LTP1	P40347	161 aa		4.19	□□□□□ -1.74
RSM28	YDR494W	YNR029C	P53729	429 aa	Known RBP	4.19	□□□□□ -1.74
RSM28	YDR494W	HFD1	Q04458	532 aa		4.19	□□□□□ -1.74
RSM28	YDR494W	ULA1	Q12059	462 aa		4.19	□□□□□ -1.74
RSM28	YDR494W	MDM20	Q12387	796 aa	Known RBP	4.19	□□□□□ -1.74
RSM28	YDR494W	TPK2	P06245	380 aa		4.18	□□□□□ -1.74
RSM28	YDR494W	FRS1	P15624	595 aa	Known RBP	4.18	□□□□□ -1.74
RSM28	YDR494W	PET127	P32606	800 aa		4.18	□□□□□ -1.74
RSM28	YDR494W	TYS1	P36421	394 aa	Known RBP	4.18	□□□□□ -1.74
RSM28	YDR494W	GAT1	P43574	510 aa		4.18	□□□□□ -1.74
RSM28	YDR494W	PMT3	P47190	753 aa		4.18	□□□□□ -1.74
RSM28	YDR494W	DIP5	P53388	608 aa		4.18	□□□□□ -1.74
RSM28	YDR494W	SNF12	P53628	566 aa		4.18	□□□□□ -1.74
RSM28	YDR494W	YDR179W-A	Q03983	463 aa		4.18	□□□□□ -1.74
RSM28	YDR494W	UFO1	Q04511	668 aa		4.18	□□□□□ -1.74
RSM28	YDR494W	NUP145	P49687	1317 aa		4.18	□□□□□ -1.74
RSM28	YDR494W	NUP1	P20676	1076 aa		4.17	□□□□□ -1.74
RSM28	YDR494W	SEC15	P22224	910 aa		4.17	□□□□□ -1.74
RSM28	YDR494W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
RSM28	YDR494W	KIN82	P25341	720 aa		4.17	□□□□□ -1.74
RSM28	YDR494W	XBP1	P40489	647 aa		4.17	□□□□□ -1.74
RSM28	YDR494W	TAX4	P47030	604 aa		4.17	□□□□□ -1.74
RSM28	YDR494W	NET1	P47035	1189 aa		4.17	□□□□□ -1.74
RSM28	YDR494W	IZH3	Q07959	543 aa		4.17	□□□□□ -1.74
RSM28	YDR494W	IMG2	P25642	146 aa	Predicted RBP	4.16	□□□□□ -1.74
RSM28	YDR494W	PRP19	P32523	503 aa	Known RBP	4.16	□□□□□ -1.74
RSM28	YDR494W	MAL31	P38156	614 aa		4.16	□□□□□ -1.74
RSM28	YDR494W	CKB2	P38930	258 aa		4.16	□□□□□ -1.74
RSM28	YDR494W	YJR096W	P47137	282 aa		4.16	□□□□□ -1.74
RSM28	YDR494W	UME1	Q03010	460 aa		4.16	□□□□□ -1.74
RSM28	YDR494W	NGL2	Q03264	515 aa	Known RBP	4.16	□□□□□ -1.74
RSM28	YDR494W	APN1	P22936	367 aa		4.15	□□□□□ -1.75
RSM28	YDR494W	ELF1	P36053	145 aa		4.15	□□□□□ -1.75
RSM28	YDR494W	TDA3	P38758	523 aa		4.15	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 58.1 ms