RNA–Protein interactions for RNA: YDR171W

HSP42, Transcript of Small heat shock protein (sHSP) with chaperone activity, yeast

Gene HSP42, Length 1,128 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HSP42	YDR171W	SNF2	P22082	1703 aa		4.92	□□□□□ -1.62
HSP42	YDR171W	CAF20	P12962	161 aa	Known RBP	4.92	□□□□□ -1.62
HSP42	YDR171W	PCT1	P13259	424 aa		4.92	□□□□□ -1.62
HSP42	YDR171W	VPS24	P36095	224 aa	Known RBP	4.92	□□□□□ -1.62
HSP42	YDR171W	YHR112C	P38716	378 aa		4.92	□□□□□ -1.62
HSP42	YDR171W	AIM21	P40563	679 aa		4.92	□□□□□ -1.62
HSP42	YDR171W	SUN4	P53616	420 aa		4.92	□□□□□ -1.62
HSP42	YDR171W	BRE5	P53741	515 aa	Known RBP	4.92	□□□□□ -1.62
HSP42	YDR171W	GAD1	Q04792	585 aa		4.92	□□□□□ -1.62
HSP42	YDR171W	DOP1	Q03921	1698 aa		4.92	□□□□□ -1.62
HSP42	YDR171W	GPP1	P41277	250 aa	Known RBP	4.91	□□□□□ -1.62
HSP42	YDR171W	RET2	P43621	546 aa		4.91	□□□□□ -1.62
HSP42	YDR171W	YGR153W	P48238	217 aa		4.91	□□□□□ -1.62
HSP42	YDR171W	YGL081W	P53156	320 aa		4.91	□□□□□ -1.62
HSP42	YDR171W	TEX1	P53851	422 aa	Known RBP	4.91	□□□□□ -1.62
HSP42	YDR171W	ARG5,6	Q01217	863 aa		4.91	□□□□□ -1.62
HSP42	YDR171W	YDL144C	Q07589	356 aa		4.91	□□□□□ -1.62
HSP42	YDR171W	YSP2	Q06681	1438 aa		4.9	□□□□□ -1.62
HSP42	YDR171W	RPA190	P10964	1664 aa	Known RBP	4.9	□□□□□ -1.62
HSP42	YDR171W	APL2	P36000	726 aa	Predicted RBP	4.9	□□□□□ -1.63
HSP42	YDR171W	ESL2	P36168	1195 aa		4.9	□□□□□ -1.63
HSP42	YDR171W	KTR4	P38131	464 aa		4.9	□□□□□ -1.63
HSP42	YDR171W	YBR053C	P38235	358 aa		4.9	□□□□□ -1.63
HSP42	YDR171W	SSZ1	P38788	538 aa	Known RBP	4.9	□□□□□ -1.63
HSP42	YDR171W	YJR039W	P47107	1121 aa		4.9	□□□□□ -1.63
HSP42	YDR171W	MSE1	P48525	536 aa		4.9	□□□□□ -1.63
HSP42	YDR171W	RNT1	Q02555	471 aa		4.9	□□□□□ -1.63
HSP42	YDR171W	FRE5	Q08908	694 aa		4.9	□□□□□ -1.63
HSP42	YDR171W	LSP1	Q12230	341 aa	Known RBP	4.9	□□□□□ -1.63
HSP42	YDR171W	ALG7	P07286	448 aa		4.89	□□□□□ -1.63
HSP42	YDR171W	MSP1	P28737	362 aa		4.89	□□□□□ -1.63
HSP42	YDR171W	APT2	P36973	181 aa		4.89	□□□□□ -1.63
HSP42	YDR171W	APN2	P38207	520 aa		4.89	□□□□□ -1.63
HSP42	YDR171W	YHR202W	P38887	602 aa		4.89	□□□□□ -1.63
HSP42	YDR171W	NUG1	P40010	520 aa	Known RBP	4.89	□□□□□ -1.63
HSP42	YDR171W	YNL195C	P40168	261 aa		4.89	□□□□□ -1.63
HSP42	YDR171W	YIR042C	P40586	236 aa		4.89	□□□□□ -1.63
HSP42	YDR171W	SET2	P46995	733 aa	Known RBP	4.89	□□□□□ -1.63
HSP42	YDR171W	AMA1	P50082	593 aa		4.89	□□□□□ -1.63
HSP42	YDR171W	COX18	P53239	316 aa		4.89	□□□□□ -1.63
HSP42	YDR171W	GPD1	Q00055	391 aa	Known RBP	4.89	□□□□□ -1.63
HSP42	YDR171W	HFD1	Q04458	532 aa		4.89	□□□□□ -1.63
HSP42	YDR171W	MCM21	Q06675	368 aa		4.89	□□□□□ -1.63
HSP42	YDR171W	YOL073C	Q08232	322 aa		4.89	□□□□□ -1.63
HSP42	YDR171W	BUD3	P25558	1636 aa		4.89	□□□□□ -1.63
HSP42	YDR171W	TRM3	Q07527	1436 aa		4.89	□□□□□ -1.63
HSP42	YDR171W	PYC1	P11154	1178 aa	Known RBP	4.88	□□□□□ -1.63
HSP42	YDR171W	LAT1	P12695	482 aa	Known RBP	4.88	□□□□□ -1.63
HSP42	YDR171W	SUI2	P20459	304 aa	Known RBP	4.88	□□□□□ -1.63
HSP42	YDR171W	ERG6	P25087	383 aa	Known RBP	4.88	□□□□□ -1.63
HSP42	YDR171W	YKR075C	P36155	307 aa		4.88	□□□□□ -1.63
HSP42	YDR171W	TAF5	P38129	798 aa		4.88	□□□□□ -1.63
HSP42	YDR171W	ECM1	P39715	212 aa		4.88	□□□□□ -1.63
HSP42	YDR171W	OAF1	P39720	1047 aa	Predicted RBP	4.88	□□□□□ -1.63
HSP42	YDR171W	MTL1	P53214	551 aa		4.88	□□□□□ -1.63
HSP42	YDR171W	YMR206W	Q03695	313 aa		4.88	□□□□□ -1.63
HSP42	YDR171W	IRC13	Q08630	104 aa		4.88	□□□□□ -1.63
HSP42	YDR171W	PUS9	Q12069	462 aa		4.88	□□□□□ -1.63
HSP42	YDR171W	NOP58	Q12499	511 aa	Known RBP	4.88	□□□□□ -1.63
HSP42	YDR171W	RPS21B	Q3E754	87 aa	Known RBP	4.88	□□□□□ -1.63
HSP42	YDR171W	HAP1	P0CE41	1502 aa		4.87	□□□□□ -1.63
HSP42	YDR171W	RNR1	P21524	888 aa	Known RBP	4.87	□□□□□ -1.63
HSP42	YDR171W	AKL1	P38080	1108 aa	Known RBP	4.87	□□□□□ -1.63
HSP42	YDR171W	HOS4	P40480	1083 aa		4.87	□□□□□ -1.63
HSP42	YDR171W	DJP1	P40564	432 aa		4.87	□□□□□ -1.63
HSP42	YDR171W	GZF3	P42944	551 aa	Known RBP	4.87	□□□□□ -1.63
HSP42	YDR171W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	not detected
HSP42	YDR171W	YJL163C	P46996	555 aa		4.87	□□□□□ -1.63
HSP42	YDR171W	BFA1	P47113	574 aa		4.87	□□□□□ -1.63
HSP42	YDR171W	ECM9	Q02202	377 aa		4.87	□□□□□ -1.63
HSP42	YDR171W	ISA1	Q07821	250 aa	Predicted RBP	4.87	□□□□□ -1.63
HSP42	YDR171W	YTM1	Q12024	460 aa	Predicted RBP	4.87	□□□□□ -1.63
HSP42	YDR171W	ECM3	Q99252	613 aa		4.87	□□□□□ -1.63
HSP42	YDR171W	HRP1	Q99383	534 aa	Known RBP	4.87	□□□□□ -1.63
HSP42	YDR171W	PPR1	P07272	904 aa	Predicted RBP	4.86	□□□□□ -1.63
HSP42	YDR171W	HIS7	P33734	552 aa	Known RBP	4.86	□□□□□ -1.63
HSP42	YDR171W	TRZ1	P36159	838 aa	Predicted RBP	4.86	□□□□□ -1.63
HSP42	YDR171W	MAL31	P38156	614 aa		4.86	□□□□□ -1.63
HSP42	YDR171W	BCD1	P38772	366 aa		4.86	□□□□□ -1.63
HSP42	YDR171W	LYS9	P38999	446 aa		4.86	□□□□□ -1.63
HSP42	YDR171W	GID8	P40208	455 aa		4.86	□□□□□ -1.63
HSP42	YDR171W	CCT5	P40413	562 aa	Known RBP	4.86	□□□□□ -1.63
HSP42	YDR171W	REC102	Q02721	264 aa		4.86	□□□□□ -1.63
HSP42	YDR171W	CTK1	Q03957	528 aa	Known RBP	4.86	□□□□□ -1.63
HSP42	YDR171W	ADY4	Q05955	493 aa		4.86	□□□□□ -1.63
HSP42	YDR171W	RGC1	Q06108	1083 aa	Known RBP	4.86	□□□□□ -1.63
HSP42	YDR171W	URN1	Q06525	465 aa	Known RBP	4.86	□□□□□ -1.63
HSP42	YDR171W	DRS2	P39524	1355 aa		4.86	□□□□□ -1.63
HSP42	YDR171W	IMG2	P25642	146 aa	Predicted RBP	4.85	□□□□□ -1.63
HSP42	YDR171W	PPS1	P38148	807 aa		4.85	□□□□□ -1.63
HSP42	YDR171W	FMO1	P38866	432 aa		4.85	□□□□□ -1.63
HSP42	YDR171W	HXT6	P39003	570 aa	Known RBP	4.85	□□□□□ -1.63
HSP42	YDR171W	HXT7	P39004	570 aa		4.85	□□□□□ -1.63
HSP42	YDR171W	GET2	P40056	285 aa		4.85	□□□□□ -1.63
HSP42	YDR171W	HMO1	Q03973	246 aa	Known RBP	4.85	□□□□□ -1.63
HSP42	YDR171W	YHM2	Q04013	314 aa		4.85	□□□□□ -1.63
HSP42	YDR171W	YLR407W	Q06070	228 aa		4.85	□□□□□ -1.63
HSP42	YDR171W	SGO1	Q08490	590 aa		4.85	□□□□□ -1.63
HSP42	YDR171W	TMA17	Q12513	150 aa		4.85	□□□□□ -1.63
HSP42	YDR171W	ATG11	Q12527	1178 aa		4.85	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 34.2 ms